Gene detail

Detailed information of SKAU_T00213760 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00213760	TRANSCRIPTION INITIATION FACTOR TFIID	CM056382.1	38850600	38904435	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00213760

ATGAGAACTTTAGAGGAAGTACAGGCTACAACGCAAATCGCCAAATTCAAAGAAGAAGATTTACAACCTGCGATTCATTGCTTGTCTTTTGGTGAACATGTTTCGTCGGGTGATTATTGTCTTATGGAGCTGGATGAAACGTTATGCAAGCACATTGAGTCTGGACAGAGTCTTGTGATCAGAGGAGACGAGGATGAGCATGCAGTTCTGTGCAGTGAAGACGAGACTTATCACCTGAAAATAGCAGACACTTCAAACCTGCTCCTCCTCATTCCGGACTGTAAGACCCCAGATCAGCTACTTGGAGATGAGGGAATGCCACACCTTATCCATTCACAGATTTGGGGCTTCTCCAACAGCTACTGGGAGCTGAGACGACAGCGACCCAGGTTAAAGAAGCTGAAAAAACTCTTGATTGAGTGTCCTTATGAGGGGTCACCACTTGGTCAGGAGGAGAGTTCAGCACAAAAGTACACAATGGATGAGCTGCTCAACCGAATTCAAGCCAGCAAGGCAGAAATTGTTGCACAGCTGGAAAATATTCACGCTTGTAACATTGATGGGTTCTGGAGGATCCTGGACTTTGACTATGAGATGAAACTCCTGGGTCATGTGATGCAGTTAGTGGACTCTGAGTCCTGGTCTTTCAGCAAGGTTCCCCTGAGAACCAGCCAGCAAGAGCTGGGGCCTCTTGAGCCACAGGAGATGATCGAACACTGCTTGAACTGTTATGGGAGGCGTTATACTGATGAAGAGGGTGAGGTGTGTTTCGCACTCGATGAAGACAAAGTATGCCAAGCCACTGCCCACATGCTCCTGCAGAATGCCGTCAAGTTCAACCTGTCAGAGTTTCAAGAAGTCTGGCAACAGAGTGTCCCAGAGGGCATGAGCACCAGGCTGGACCAGCTGAAGGGTGTGGCTCTACTGGACCGCAGCACCAGGCCGGAGACCATTTGCTTGCTGAGGGTTGAAGACCTGCCTGAGGACACACTGGAGCGCTTCAACTGTTTGTTCAGCATGAGGGAGAAATGGACGGAAGACGACATTGCCCCCTACATACAGGACTTGTGTGGTGAAAAGCAAACAACTGGAGCTCTCCTTACTAAATATGCTCGTTCATCCATGCAAAATGGGACGAAAGTGGTCTGTATAAACAACATTAACTTTCAGAGAAAATCTGTGATTGGGTATGTGGAGCTGACTATTTTCCCGACAGTGGTGAACCTAAACCGCATCAAACTCAACAGCAAGCAGTGCAGAATATACAGGGTTCGGGTCAATGACTTGGAGGCCCCATTCATTTACAATGACCCGACACTGGAAGTTTGTCACCATGAGTCCAAGCAGAGAAACTTGAACTACTTCTCCAGTGCCTACACAGCGGCAGTTAGCGCCGTGGACCCTGATGCCGGGAATGGCGAACTGTGCATCAAGGTTCCCTCAGAGCTATGGAAGCAAGGAGACGAAATGAAGGTTCTGAAGGTGTATATTGAATTCTCCCTGGACCAGCCTAAAGGGGGTCTGCATTTTGTGGTGCCTGATGTGGAGGGCAGCATGGCTGAGAGAGGAGCCCACGTCTTCTCTTTCGGATACCAGAATTCCACACGgttCTGGTTCCCCTGTGTGGACTCATACTCTGAGCTGTGTACCTGGAAGCTGGAGTTCACGGTGGACGCTGCCATGGTGGCAGTATCTTGTGGGGATCTGGTGGAGACGGTCTACACCCATGATATGCGAAAGAAAACCTTCCACTACATGCTGCCCATCCCCACTGCGGCCCCCAACATTTCCCTAGCTGTGGGACCCTTTGAGATCCTGGTGGACCCCTATATGCATGAGGTTACACACTTCTGCCTACCTCAGCTGCTGCCCTTGCTGAAGCACTCCATGTCCTATTTGCATGAGATCTTTGAGTTCTACGAGGAGATCCTCACCTGCCGCTATCCATACTCCTGCTTCAAGACTGTGTTTGTGGATGAAGCTTATGTCCAAGTGTCTTCATACGCATCTATGAGCATTTTCAGTACAAATCTCCTGCACAGCGCCATGATTATAGATCAGACTCCCCTGACAAGACGCTGCTTGGCTCAAGCCTTGGCCCAGCAATTTTTTGGCTGCTTCATATCCCGAATGTCCTGGTCTGATGAATGGGTACTGAAAGGGATCTCAGGCTATATTTATGGACTGTACCTGAAGAAGACATTTGGAGTGAATGAATACCGCCACTGGATCAAAGAGGAGCTGGACAGGATAGTGGAGTATGAGCTGAAGACAGGCGGTGTTCTACTTCATCCTACCTTCTGTGGTACTAAAGAAAAAGACAACCCCACACCTCACCTGCATTTCTCCATCAAACACCCCCACACGCTGTCCTGGGAGTACTACAAGATGTTCCAGTGCAAGGCCCACCTTGTAATGAGGCTGATTGAGAACCGGATCAGTATGGAGTTCATGCTGCAGGTGTTCAACAAGCTATTGAGCCTGGCCAGCACTGCCTCGTCTCAGAAGTACCAGTCGCACATGTGGAGCCAGATGCTGGTGTCCACCTCCGGCTTCCTCAAGTCCATCTCCAACGTGTCAGGCAAGGACATTGGGCCCCTCATCAAGCAATGGGTAGACCAGAGTGGGGTGGTGAAGTTCTTTGGCAGTTTCGCCTTCAACAGGAAACGTAACGTACTGGAGCTGGAAATCCGACAGGATTACACATCCTCTGGGACTCAGAAATACGTGGGACCGATTAAGGTGACAGTTCAGGAACTCGACGGATCCTTCAACCACACTTTGCAAATCGAGGAGAACAGTCTCAAACATGATATCCCCTGCCATTCAAAGAGTAGACGaaacaaaaagaagaaaattccTCTGATGAATGGAGAAGAGGTGGACATGGACTTGTCTGTAATGGATGCCGACTCTCCATTACTGTGGATTCGGATTGACCCGGACATGTCCATCCTGCGCAAGgTGGAGTTTGAGCAGGCGGACTTCATGTGGCAGTACCAATTGCGCTATGAGCGGGACGTGGTGGCCCAGGAGGAGGCCATCTCTGCCCTGGAGAAGTTCTCAACGCCTGCCTCCCGCCTGGCGCTGACTGACATCCTGGAGCAGGAGCAGTGCTTCTATAAAGTGCGCATGCAGGCCTGCTTCTGTCTGGCCAAGATTGCAAACTCCATGGTGAGCACGTGGACCGGTCCCCCTGCCATGAAGTCCCTATTCACCAGGATGTTTTGCTGTAAGAGCTGCCCCAACATCGTCAAGACCAACAACTTCATCAACTTTCAGAGCTACTTCCTGCAGAAGACCATGCCAGTTGCCATGGCATTGCTCAGAGATGTGCAGAACCTCTGTCCAAAAGAGGTCCTAAACTTCATTCTGGACCTTATCAAGTACAACGACAACAGGAAGAACAAGTTCTCGGACAATTTCTACCGCGCTGAGATGATCGACGCGTTGACCAACTCTCTGACCCCAGCAATCAGCATCAGCAATGAAATTCGTACAGTGGACAACCTGAACGGGGATGTGCGCCTCATCCTGGAGGAGATCACCCGCTTCCTCAACATGGAGAAGTTGCTGCCCAGCTACAGGAATACAATCACAGTCAGTTGCCTGAGAGCCATCCGTATGCTGCAGAAAACCGGCCACATCCCCAGTGATCCTTTGCTGTTCAAGTCCTATGCAGAATACGGTCACTTTGTGGAAGTACGCATCGCTGCACTTGAGGCTGTCGTGGATTACACACGAGTTGACAGGAGTTCCGGGGAACTGCAGTGGCTGCTCAACCTGGTCCAGAATGACCCAGCGCACTACATCAGACACAAGATTTTAAGCATGCTGGGAAAAAACCCACCCTTCACCAAAGCCATGGAGTCGTCCCTCTGCAGCGAAGCTCTGGTAGACCAGTTGTGGAAGCTCATGAACTCAGGTACTTCTCATGACTGGCGGCTACGCTGTGATGCTGTGAACCTGTACTACACCCTGTTCGGCCTCACCCGGCCCTCCTGCCTTCCCCTGCCCGAGCTGGGCTTGGTGCTCAACCTCAAGGAGAAGAAGGCTGTCCTCAACCCCACCATCAAGCCCGAAACAGGCGCTGGGGCCGTGGAGACGGGAGCCCCGGGCAACTTCCTCAATCCTCCCATTGGCTTCCCCAGCAGTATGGAGGAGGAGCACATGGCAATGGAGCCGCCCCCAAGTGCCACGGCTCCACCCCCACTGGGGCTGAAGAGGAAGGCGGAGACGCCCCTGGGATCCCCACCAGAGCCCGGGCAGGTACTGCAGGACGAGGGCCGCAGAAGAGACAAACTGCAGATCAGATTCAATCCGCAAGAGGAGGAAGATATCGACATGGACACAGTCCACGACAGCCAAGCCTTCATTTATCACCATCTCAACATGTTGGAGAGGCCATCTACACCAGGTAAAGAACCACCATCTGTGGAGCAGGCCATTCTATCGATGCCAGCGACGCCCCTCCCCATATTCAGCAAGGAGAGTAACTCCTCCTCCAAGCACAgtgaccaccaccaccaccaccatcaccaccacgaacacaagaagaagaagaagaagcacaaacacaagcataAGCACAAGCATAAGCATGACAGTAAAGAGAAGGACAAGGACAAGGATAGGGATGCCCATGGGACAATCAACAGCCCCGCCAGTGGCCGCTCCCTACGCTCGCCTTCCCTCTCCGATTGA

Transcript

SKAU_T00213760

CGTTAACATTACAACATTAACCTGTAAACTATCGTGTATTTTTTTGTGGCCTTCAAACACAGGTCGCCCAAATTAAATCACTGTACaaaaatgtgtagcctatagtgcatagactgtataaaaataggtattGTGTGGCTACAACAGTGTAACAGAACAGCAACAGCGTCCCGGATAAACCTAAACGCGTGTGCATAGTTATTCGCTGATTGGCCGGTAAGATTGTCACTCATACATCATGTCTTCTTCCGGTAAATATTGCGGGAAAGTTAAACGCGGAAGAGTTGGTTAGTGTACAATTTTTCTGGGGTTTTTTTCAGCCTAACAAGCAGGTTGGCCGATTTTACAGAAACATTAGAGCTTTCCCTTACTTTTGGACAGTAGTGTAAAATGAGAACTTTAGAGGAAGTACAGGCTACAACGCAAATCGCCAAATTCAAAGAAGAAGATTTACAACCTGCGATTCATTGCTTGTCTTTTGGTGAACATGTTTCGTCGGGTGATTATTGTCTTATGGAGCTGGATGAAACGTTATGCAAGCACATTGAGTCTGGACAGAGTCTTGTGATCAGAGGAGACGAGGATGAGCATGCAGTTCTGTGCAGTGAAGACGAGACTTATCACCTGAAAATAGCAGACACTTCAAACCTGCTCCTCCTCATTCCGGACTGTAAGACCCCAGATCAGCTACTTGGAGATGAGGGAATGCCACACCTTATCCATTCACAGATTTGGGGCTTCTCCAACAGCTACTGGGAGCTGAGACGACAGCGACCCAGGTTAAAGAAGCTGAAAAAACTCTTGATTGAGTGTCCTTATGAGGGGTCACCACTTGGTCAGGAGGAGAGTTCAGCACAAAAGTACACAATGGATGAGCTGCTCAACCGAATTCAAGCCAGCAAGGCAGAAATTGTTGCACAGCTGGAAAATATTCACGCTTGTAACATTGATGGGTTCTGGAGGATCCTGGACTTTGACTATGAGATGAAACTCCTGGGTCATGTGATGCAGTTAGTGGACTCTGAGTCCTGGTCTTTCAGCAAGGTTCCCCTGAGAACCAGCCAGCAAGAGCTGGGGCCTCTTGAGCCACAGGAGATGATCGAACACTGCTTGAACTGTTATGGGAGGCGTTATACTGATGAAGAGGGTGAGGTGTGTTTCGCACTCGATGAAGACAAAGTATGCCAAGCCACTGCCCACATGCTCCTGCAGAATGCCGTCAAGTTCAACCTGTCAGAGTTTCAAGAAGTCTGGCAACAGAGTGTCCCAGAGGGCATGAGCACCAGGCTGGACCAGCTGAAGGGTGTGGCTCTACTGGACCGCAGCACCAGGCCGGAGACCATTTGCTTGCTGAGGGTTGAAGACCTGCCTGAGGACACACTGGAGCGCTTCAACTGTTTGTTCAGCATGAGGGAGAAATGGACGGAAGACGACATTGCCCCCTACATACAGGACTTGTGTGGTGAAAAGCAAACAACTGGAGCTCTCCTTACTAAATATGCTCGTTCATCCATGCAAAATGGGACGAAAGTGGTCTGTATAAACAACATTAACTTTCAGAGAAAATCTGTGATTGGGTATGTGGAGCTGACTATTTTCCCGACAGTGGTGAACCTAAACCGCATCAAACTCAACAGCAAGCAGTGCAGAATATACAGGGTTCGGGTCAATGACTTGGAGGCCCCATTCATTTACAATGACCCGACACTGGAAGTTTGTCACCATGAGTCCAAGCAGAGAAACTTGAACTACTTCTCCAGTGCCTACACAGCGGCAGTTAGCGCCGTGGACCCTGATGCCGGGAATGGCGAACTGTGCATCAAGGTTCCCTCAGAGCTATGGAAGCAAGGAGACGAAATGAAGGTTCTGAAGGTGTATATTGAATTCTCCCTGGACCAGCCTAAAGGGGGTCTGCATTTTGTGGTGCCTGATGTGGAGGGCAGCATGGCTGAGAGAGGAGCCCACGTCTTCTCTTTCGGATACCAGAATTCCACACGgttCTGGTTCCCCTGTGTGGACTCATACTCTGAGCTGTGTACCTGGAAGCTGGAGTTCACGGTGGACGCTGCCATGGTGGCAGTATCTTGTGGGGATCTGGTGGAGACGGTCTACACCCATGATATGCGAAAGAAAACCTTCCACTACATGCTGCCCATCCCCACTGCGGCCCCCAACATTTCCCTAGCTGTGGGACCCTTTGAGATCCTGGTGGACCCCTATATGCATGAGGTTACACACTTCTGCCTACCTCAGCTGCTGCCCTTGCTGAAGCACTCCATGTCCTATTTGCATGAGATCTTTGAGTTCTACGAGGAGATCCTCACCTGCCGCTATCCATACTCCTGCTTCAAGACTGTGTTTGTGGATGAAGCTTATGTCCAAGTGTCTTCATACGCATCTATGAGCATTTTCAGTACAAATCTCCTGCACAGCGCCATGATTATAGATCAGACTCCCCTGACAAGACGCTGCTTGGCTCAAGCCTTGGCCCAGCAATTTTTTGGCTGCTTCATATCCCGAATGTCCTGGTCTGATGAATGGGTACTGAAAGGGATCTCAGGCTATATTTATGGACTGTACCTGAAGAAGACATTTGGAGTGAATGAATACCGCCACTGGATCAAAGAGGAGCTGGACAGGATAGTGGAGTATGAGCTGAAGACAGGCGGTGTTCTACTTCATCCTACCTTCTGTGGTACTAAAGAAAAAGACAACCCCACACCTCACCTGCATTTCTCCATCAAACACCCCCACACGCTGTCCTGGGAGTACTACAAGATGTTCCAGTGCAAGGCCCACCTTGTAATGAGGCTGATTGAGAACCGGATCAGTATGGAGTTCATGCTGCAGGTGTTCAACAAGCTATTGAGCCTGGCCAGCACTGCCTCGTCTCAGAAGTACCAGTCGCACATGTGGAGCCAGATGCTGGTGTCCACCTCCGGCTTCCTCAAGTCCATCTCCAACGTGTCAGGCAAGGACATTGGGCCCCTCATCAAGCAATGGGTAGACCAGAGTGGGGTGGTGAAGTTCTTTGGCAGTTTCGCCTTCAACAGGAAACGTAACGTACTGGAGCTGGAAATCCGACAGGATTACACATCCTCTGGGACTCAGAAATACGTGGGACCGATTAAGGTGACAGTTCAGGAACTCGACGGATCCTTCAACCACACTTTGCAAATCGAGGAGAACAGTCTCAAACATGATATCCCCTGCCATTCAAAGAGTAGACGaaacaaaaagaagaaaattccTCTGATGAATGGAGAAGAGGTGGACATGGACTTGTCTGTAATGGATGCCGACTCTCCATTACTGTGGATTCGGATTGACCCGGACATGTCCATCCTGCGCAAGgTGGAGTTTGAGCAGGCGGACTTCATGTGGCAGTACCAATTGCGCTATGAGCGGGACGTGGTGGCCCAGGAGGAGGCCATCTCTGCCCTGGAGAAGTTCTCAACGCCTGCCTCCCGCCTGGCGCTGACTGACATCCTGGAGCAGGAGCAGTGCTTCTATAAAGTGCGCATGCAGGCCTGCTTCTGTCTGGCCAAGATTGCAAACTCCATGGTGAGCACGTGGACCGGTCCCCCTGCCATGAAGTCCCTATTCACCAGGATGTTTTGCTGTAAGAGCTGCCCCAACATCGTCAAGACCAACAACTTCATCAACTTTCAGAGCTACTTCCTGCAGAAGACCATGCCAGTTGCCATGGCATTGCTCAGAGATGTGCAGAACCTCTGTCCAAAAGAGGTCCTAAACTTCATTCTGGACCTTATCAAGTACAACGACAACAGGAAGAACAAGTTCTCGGACAATTTCTACCGCGCTGAGATGATCGACGCGTTGACCAACTCTCTGACCCCAGCAATCAGCATCAGCAATGAAATTCGTACAGTGGACAACCTGAACGGGGATGTGCGCCTCATCCTGGAGGAGATCACCCGCTTCCTCAACATGGAGAAGTTGCTGCCCAGCTACAGGAATACAATCACAGTCAGTTGCCTGAGAGCCATCCGTATGCTGCAGAAAACCGGCCACATCCCCAGTGATCCTTTGCTGTTCAAGTCCTATGCAGAATACGGTCACTTTGTGGAAGTACGCATCGCTGCACTTGAGGCTGTCGTGGATTACACACGAGTTGACAGGAGTTCCGGGGAACTGCAGTGGCTGCTCAACCTGGTCCAGAATGACCCAGCGCACTACATCAGACACAAGATTTTAAGCATGCTGGGAAAAAACCCACCCTTCACCAAAGCCATGGAGTCGTCCCTCTGCAGCGAAGCTCTGGTAGACCAGTTGTGGAAGCTCATGAACTCAGGTACTTCTCATGACTGGCGGCTACGCTGTGATGCTGTGAACCTGTACTACACCCTGTTCGGCCTCACCCGGCCCTCCTGCCTTCCCCTGCCCGAGCTGGGCTTGGTGCTCAACCTCAAGGAGAAGAAGGCTGTCCTCAACCCCACCATCAAGCCCGAAACAGGCGCTGGGGCCGTGGAGACGGGAGCCCCGGGCAACTTCCTCAATCCTCCCATTGGCTTCCCCAGCAGTATGGAGGAGGAGCACATGGCAATGGAGCCGCCCCCAAGTGCCACGGCTCCACCCCCACTGGGGCTGAAGAGGAAGGCGGAGACGCCCCTGGGATCCCCACCAGAGCCCGGGCAGGTACTGCAGGACGAGGGCCGCAGAAGAGACAAACTGCAGATCAGATTCAATCCGCAAGAGGAGGAAGATATCGACATGGACACAGTCCACGACAGCCAAGCCTTCATTTATCACCATCTCAACATGTTGGAGAGGCCATCTACACCAGGTAAAGAACCACCATCTGTGGAGCAGGCCATTCTATCGATGCCAGCGACGCCCCTCCCCATATTCAGCAAGGAGAGTAACTCCTCCTCCAAGCACAgtgaccaccaccaccaccaccatcaccaccacgaacacaagaagaagaagaagaagcacaaacacaagcataAGCACAAGCATAAGCATGACAGTAAAGAGAAGGACAAGGACAAGGATAGGGATGCCCATGGGACAATCAACAGCCCCGCCAGTGGCCGCTCCCTACGCTCGCCTTCCCTCTCCGATTGAGGCCTGAGAATATCAAACACCGCCCTCAAACACCtcgctgtgccccccccccccccccccccccccccccaaacccaagTCACACAAAGATGGAATTTACCTGCCATACATCCACAAATTTAGGGCCACTGGGTCCCAGATCATGCAGAACCTAAGGACCACGAAGGCTAAGCTCAACCACCATTTTTGTTGATAAATGACaatttagagtttttttttttttttatatatagtatTTCCGACTGGTCTAATAACACTCTTTTGAATTTCAGCATCACTGGTTTCTGTGGGCTTTCATAAAGCCTGAGTAATTAGTAATTTCGCTAAGCCAACTAAATTGAGGGCTTACATTTTTTTAAGGGGAAAGAATGAAACTGAAAAATACCTCCTCTTTGTTAGAGTGTAGCGTGCACAAGCAAAAATGTTGATCGTCTTGGCCTCTGTCCACATCACTCTAAAAATCCCAAATATTAAGCATGTTGCATTCATGTTTTTACATCTGAAATCTGAAGTTTCTGCCAGTGTAATGGACCTAGATTTTATTGTATAACATGCATTGTTATATTGGATGTTCAGGGCTTGAATTTCTATTGTTATTACTCTATTGTtaccttattttttatttttggtcaaTCCGAGAAGAAAATTTGGGTCACTTCCTGGGTCGATTGATATATGAACATACTGTACAATTTCCACTTGAGCCTTAAATCATTATGTATTTTGTGAGTTTCCAACCATGCTTGATTTTGTCCCACGTATAgaacttttttctgtttttagtaTTGCATCTTTAACAGGCTCACTTGGTTGCTGTTATTTCTTTTTTGCATAggatagatttttttattttttgtatttcccATTTTACTGTCATAGAATAACAACCACATTAACCATGGCAATTAACATACTTTTGTGCATTTTTGCCATGAATTTATATTTTACGTATTCCTGATTAATAAAGTGTTTTTTAGATt

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09724	Dcc1	Sister chromatid cohesion protein Dcc1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR019128	Family	Sister chromatid cohesion protein Dcc1	Interproscan
IPR027268	Homologous_superfamily	Peptidase M4/M1, CTD superfamily	Interproscan
IPR037813	Family	Transcription initiation factor TFIID subunit 2	Interproscan
IPR042097	Homologous_superfamily	Aminopeptidase N-like , N-terminal domain superfamliy	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15137	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0007064	Biological Process	mitotic sister chromatid cohesion	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0031390	Cellular Component	Ctf18 RFC-like complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-