Gene detail

Detailed information of SKAU_T00204970 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00204970	NADH DEHYDROGENASE	CM056381.1	82233393	82258286	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00204970

CACTAAACCTGGCCGTgggttcgtatatagttctgtggttgtaCCAAAGGAGCCAGTGTTtggatcatagactgtataaaaataggtttggATTGGTACGTGAAAAGCACAGTTCTGTGGTAAACAGTCGTGAGTAAACCGGAAGAAATGAGGCACGTTCCTTGCGCAAGCCGgaagttttcaaatattttcaagatggcggcGTTGGTCGCTCCTCGCCTGATCCGTTTTGGATCGTTTTCCTTGAGACCTACGTCTGCATACTGCTTACGCACGCAGGGTCTTCACCAGAGCACGACGAATGAGAATTCCAGCAGTGTGGTTCCGGTTCGGGAGAAGAGCACCGCTGTTGCAGCCAAGGCATCTGCTGTGCCGAGCAATAAGGGAGAATATGTGATCACCAAACTAGACGACCTGGTGAACTGGGCCCGCAGGAGCTCTCTGTGGCCCATGACGTTTGGCCTGGCCTGCTGTGCGGTGGAGATGATGCACATGGCGGCTCCGCGCTACGACATGGACCGTTTCGGCGTGGTCTTCAGAGCCAGCCCCCGCCAGGCTGATGTCATGATCGTCGCCGGAACCCTCACCAACAAAATGGCCCCTGCCCTCCGGAAgGTGTATGACCAGATGCCTGAGCCCCGATATGTGATTTCAATGGGCAGCTGTGCTAACGGAGGGGGATATTACCATTACTCCTATTCTGTGGTCCGAGGCTGTGACCGCATCGTACCGGTAGACATATACGTTCCAGGCTGCCCGCCCACAGCAGAGGCCCTTCTATACGGCACGCTGCAGCTGCAGAAGAAGATCAAGCGGGAGAAGAAGATGAAGATCTGGTACCGCAAcaccaatcacatggtgaagtttgcggacgacacaactctggtgggtctcatcaccaaggacgacgagacccactacaggaaggaggtcgaccttctaaccacgtggtgcagagacaacaacctcctgctgaacGAGAAACTCAGGACTGCGCTGGCTCCACTGCAGGAGAAGCTAAAAGCCTTTAATGAAGTTAAACTAATCTGTgatcaaacagcagagcacatcaagagccaggcccagcacacagagagacagataaagatggagtttgagaaacttcagcagttcctaaaagatgaagaggcagccaggatcactgcactgagggaggaagaggagcagaaaagtcagatgatgaaggagaagattgagaagatgacagaagagatatcatccctttcagatcaaatcagagccatagaacaggagctgggagctGAAGACGTCTCATTCCTGCAGAGCTACAAAGATGTGGAGAAACGagcccagtgcacactggcggatccagagaaggtctcaggagcgctgattgatgtggccaagcacctgggcaatctgaagtacagagtgtgggagaagatgctggggacTGTTCAATACACTCCTGTGACTCTGGATCCAAACACAGCACATCCCATCCTCTCACTGTCTGAGGTTCTGACCAATGTGAGATGCAGTGATGAAAGACTGCAGGTTCCTGATAATCCAGAGAGATTTAATATGTACGCGTGTGTATTGGGCTCTGAGGGATTCAGCTCAGGGAGACACTGCTGGGATGTAGACGTGGGGAATGCATATTACTGGGTGGTGGGTGTGATTAGAGAGTCCATAAGCAGGAAAGGGGATATGGATTGGAGCCCAGCAGGAGGAGGGTGGAGTATAGAGCAGAGCTATGGGAGATACAGAGCCCTGAGCTCCCCACGTACAGACCTCACTGTGCAGAGGAAACTCCAGAGGGTCAGAGTGCAGCTGGACTGGGACAGGGGGGGAGGCAACGGGAATGCTTGCTATAAAACTGCCAGCTCCACTGCTAAACGTCCTTCTTTGCCGGCATTAAAACGAAGATGTGGAGCCTAAAATCTCCGTTCAACCCCCACCCACGTGACTTGCAATGGTCGCCGGGTCTGTTCGTCAGATTGATTCCTGGAATCCGCTGCCGTTATGTGATTGGGGTGGTTTTCCTGCTGCAGCTCTGAGAAGCCAGTCGAAGATGTAAGATGTGAAGATGTAAAAGGTGAATCAACACTGAGGCCTGTGGCACCAAAAGCTCCGCCCACCCAGAGGAGTCTCTGCCAATGAATCTGCAGACACTACTATGATTTGGTGAGTTTCTCTTCCTGGTCAGTTTAGTGGTACGGTGTGGAATTGGCTGATACGATGATGACAGCATAGTTCAGCAGATAAACCATGAAGAACAAACAGCATTGTCTTTCGCTCCTAGCTGACGCATCAGCTGTGTGGGCTTCATACATTAACGGGGCGTCGTGTAGTCGTGGGTAACACTTTCTCTACCTTTCTTTGCAGGCAGGAGGAGACTGACTGCTTGACCTCAAAGgtGGAGCCCCCTGCTGACCGGAGGTCATAACGGCTCTTCTCtgATGTGAAAATTGGTGTCGATCATGAGGATGCGGCTTCCCTTGGTGTGGATTTCTGGGTGTGGCATTTGAGTGGTCCCGGGCAATCCACACACCTATTGGGGGATCCTGGAGGCGTGACCAGAGCGAGATTTGGGGCGTCTTCACTGCTGACTGCATACGGGGGACCTGAGCCAATCTCTGCTGTGTGGCATTATTCTGAACACTTTGAATGTGCATTACTGTCCAAGTGAAtaaatgacattttaaaataCCTTGGGTTTTTCTCCTTTCTCAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01058	Oxidored_q6	NADH ubiquinone oxidoreductase, 20 Kd subunit	Family	Interproscan
PF13765	PRY	SPRY-associated domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001870	Domain	B30.2/SPRY domain	Interproscan
IPR003879	Domain	Butyrophylin-like, SPRY domain	Interproscan
IPR006137	Domain	NADH:ubiquinone oxidoreductase-like, 20kDa subunit	Interproscan
IPR006138	Family	NADH-ubiquinone oxidoreductase, 20 Kd subunit	Interproscan
IPR006574	Domain	SPRY-associated	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11995	NADH DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005747	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0008137	Molecular Function	NADH dehydrogenase (ubiquinone) activity	Interproscan
GO:0009060	Biological Process	aerobic respiration	Interproscan
GO:0015990	Biological Process	electron transport coupled proton transport	Interproscan
GO:0032981	Biological Process	mitochondrial respiratory chain complex I assembly	Interproscan
GO:0045272	Cellular Component	obsolete plasma membrane respiratory chain complex I	Interproscan
GO:0048038	Molecular Function	quinone binding	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-