Gene detail

Detailed information of SKAU_T00192550 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00192550	HOMEOBOX PROTEIN	CM056381.1	31013604	31021210	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00192550

AAATATCCCCTGGAGAGAAACAGGCGGTGTTTCCGACACTTGAAGTCCTCTGTCATTGGATGCGCGCTTCAATCAAATCTAACTCTAATCTAAGCAAGttcataaaaaacaacaacagcagcaaagtgtccaaaaaaaaacactgtttgtACTTGTCAATAGAGTTTCGCAACGCATCGATTTCTGCGCAAAAACGATGACGCTTAGAGCACGCTGATCTTTTTTCTCAGAGTGCAATATTTACTGTATAGCTATCTTGTAGGATTTCATCAACTCTGCAAGCTATCCTCCAAAATGTGACAATTACTAATATTTTCAAAGTAATAATAATCCAAACTTCGCATTGAGGAACCAGACTGTTTGGAATTATTTTGAGAAAGCGGGGTAAGCCTCCATCGTGCAGTTTATGGACCGGGTCTCCACGTGAACTAGCCCGGAACGGAAAAAAAGAAGCTGAATAACCAAGGACTATAGAGGCCATCGCAAAATTTTCATCATTATCTCCAGCGTCGCCCTCCACTCTAATTTTAGCATGATGTCATATCTTAAACAACCACCTTACACAGTCAATGGACTGAGCATAACTACCTCCGGGATGGATCTCCTACATCCGTCCGTGGGCTACCCAGCTACACCTCGTAAGCAGAGACGCGAAAGGACGACCTACACGCGCGCTCAGCTAGATATTCTAGAGGCCCTCTTCGCCAAGACTCGCTACCCTGACATATTCATGCGCGAGGAGGTGGCATTAAAGATAAACCTGCCAGAGTCTCGCGTACAGGTCTGGTTTAAGAACCGGAGGGCAAAATGTcgccagcagcaacagcagcagcagaccGGGGGGGCGAACAAGATTCGACCAGTCAAAAAGAAAAGTTCTCCGGCCAGAGAAGCGAGCTCTGAGAGTGGGGCGAGCGGCCAATtcacaccccctaccattacctcAGTCCCTACTGTCTCCACCAGTAGCGCCCCGGTATCGATCTGGAGCCCAGCCTCAATTTCTCCCCTGTCCGATCACCTCTCTACTTCTTCATCCTGTATGCAACGGTCGTACCCGATGACTTATACGCAAGCATCGGGATACGGCCAAAGCTACGCCGGATCATCTTCTTACTTTGGCGGGATGGACTGCGGGTCTTACCTCTCCTCCATGCCTCACCAGATACCAGGGCCGGGCTCTGCGCTTAGTCCAATGAGTACCAACACTGTTACCAGTCACCTCAACCAATCCCCAGCTTCGCTATCTGCGCAGGGCTACGGAGCCTCTGGGCTGGGGTTCAACTCTGCCGCCGATTGCTTGGATTACAAGGACCAAGCCGCATCCTGGAAATTAAACTTTAATGCCGATGGCTTGGATTACAAAGATCAGACCTCGTCTTGGAAATTCCAGGTTTTGTGAAGCGAACAACTGGCAGCGAATTACATTTACGGTacacctacacccccccccccccctgattgATGACTATCAATCACCACAGCTTTGGTTCGGTTTTTTTGGCTATTAAATCCCCACAGCTCCACTTCTGTTAAATTCGCTACGCGGAAACACGAATAGGCTTCCTTGTTTGGTGCGTCTTCTCGTATGTCAGCCGGTTAATGGCACCAGTTGGTTAATTTAAGGAAAACGTGGGGGTAATTAACTCTTCGCAACTCTTCACACCCAAGGAACAAATCGTTATCCAAGAAAATTACACCCAAGATTTCATTCTTTGGTTAAGTGCTTGGAATGGGCCTGCTTTTCTTAAGCCTCTTAAAACTGGCCGACCTACTTCCTGGTTGGCAAATGGAGGGACTCTTTGATCAGGAATCAGGACGGTGTGTGGACTGCGCGCCCCTGCGGCGAACTAGATGCACTACGTTATTTAAGAAAAATGTTTATAAGGAATAAGCATGTAGTTTTCAAGAGACAATCAGTGTATGTCATATCAATGGTCCATATgatatgtgttttgttttttgtgatagtCTTCAAAACTGTGATCTGTTTAATTGTATGCAATTTGTGAGCTTTGCGCCAGCGAAGACTGCTATGATTTAAAAGGTTTAATAACGATGAAATAATGAGCAATTATTAAAAAGAGATCAATATTTCCAAAGTGTATGAAGAGTGTCCTGAGTGTCCTACTTGGACCTCTGGCTCCAATGGTGGTACTGCGAGTCGTCGTATTTGGACACAATACAAGTGGTGTCGTCGGACCCTCTGTTACAATCACAATTGGTTCAAGGTAGATTTTTTGCCCGTTTGCAAATGTTGgcaaatacattgtatatgtgaATAAACCTCAACTCCGGACATCGTGCATGCTGTGCAACAGAGCTCAGATTGTTCCAGCCCCAGTTAATGTCGCTTCCCGACTCTCCAACGAAATACATATTCAAAAATAATGATTACGGTTAAATGGTATTTGATGCAGTGTGgagtaggctacatttatttATACAACAGTGTTCATATGGG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox
Transcription Factors Family	TF_Otx

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF03529	TF_Otx	Otx1 transcription factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR003022	Family	Transcription factor Otx2	Interproscan
IPR003025	Family	Transcription factor Otx	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR013851	Domain	Transcription factor Otx, C-terminal	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45793	HOMEOBOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-