Gene detail

Detailed information of SKAU_T00190070 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00190070	APOLIPOPROTEIN B	CM056381.1	22157400	22165979	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00190070

GAATACACTGCTACCATCGCCTACGAACTCCTCAAGGAAGGAAAAGATGGACGGCAGAAAGTGGATGCACTGAAGATAACTCTGAAGGCAGAGGGTGAAAAATCTACTGAGGCTGTGGGCACTATTAAGTACAATAGGAACAGGAATATGCTCACCACTGACATCCAGATCCCTGACTATGATTTGGAAGCTGGAATTAGACTTGGTGTCACTGATAGCAGTAGCAAAGGAAAGAAGATCACCTTTGACATCACAAACAAGAACATCCCCCAGCTGTCTCTTGTTTGCCGTGCTAAACTTGAGGCTATGACGGATGGTATGCTTCAGCTCCAGCTGACGGTCCCCTCTCTAAAGACTGATGCCACTGTCACTGTCACCCTGCAAAGTGCTGAGGGGTTGACTTTGGGTATTGAAAGTGTCATCAATATTCCTGAGACGTCGTCCAAAGAAAACGTCATATTCAGATATGATGAGAACAAGGTTGAGGTTGAATTCAAGTCCGACATGAGCTCTGAAATCCAGAAGCTCTTCCCATATGCAGAGGACTACCAGAAGATGCTTCAGCAGTTCCTTGATGATGTTCTGGACCAAAAGGTGgctaagactgacatgaacattcGTCACATCTTCTCCAAATCCCTTGAGGCTGGCAACATCTGGTTGGACAAAATTGCTGCTGATATCCCCTATGTTGAGAACCTGAGAAGCATCCCAGACATCACTCTACCTTCTGTGCCCAAGAAACTATTCTTGAAATCAGAGTCCATGTTCCGGTACCAGTTTAACAAGGATCGCTTCTCCATTACCCTCCCTCTGCCTCTGGGTGGTCAGTCCTCCACAGACCTTAAAATCCCCTCCACCGTGACCATCCCTCGCCTGTTTGTGCCAAAGATTGGTCTGGACATTCCTTCCACAGAGATCAGCATCCCCACCTTCTCCATACCCCCCAGCTATGAGCTCCCACTGCCGCTCATTGGAATGGCTGAAGTATCCGCCAAGGTGAATAGTAACTTCTACAACTGGGAAGGGTCAGTCTCTGGTGGCAACAATACAGTGGACACCCCCAGCTATATTGCTAAGTACCAGATAATGGCAAACTCCCCCTTGGATCTCCTCTCTTACAAAACAGAAGGAACTGTACTGATCACCGATACCACTGAATCCATGAAGACCCTTGTTAACAGTTCGCTGAACCACAAGTTTGTTGATGCAAGCTTCAGTTTCGTAGAGTCAATGACCATTGCAGACAGTGTAAAGGCAACAGGTAACTACAAGATTGAAGCCTCCAGCCCTCTGGGTCTTTCATCATCCATGTACGTGACAGCCCAGTCTACATATACTCCTGAAGAAGTAGCTGGAGATGCTAACTTTGATGGAGCTATCAAACTGGGTAgcctgtctgccagcacctcatACACCCAGTCATATATCATCCACCCAAGCCGGAGAGAAGCAAAGGGAGAGTCAACATTGAGAGTGGACACTCCTTTGGTAGGAATCCTCAATAAGGTTAAGGGGGCCTATGCTAATGAAGAGCTATCCATGGAGTCCACCACTAACATGAACAATAAACATCTGGAGCATGTGACAAAGGTTGACATCAGCTACAAGGATTCCAAAGTCTCCCTGAAGTCTGACAGTGTGTCCACTGCAATTAGTACAACACTCCGCAACCAAGTTGAATTCGCTGCCTCTGCAGAAAGTGCCAGCATCAGAGTAGAATCACAGGTTGACAATTCAAAAAACCGTGCCTACTCTCTGCTTTCTGGCTCGCTGACTGCCCACAGCCTTGAGCTGAACAGTGATGCCTCCATCAACCTCAAACACAAACAAGGCTCCCACAAAGCTACTCTGATGATCAACAGTGGTGGTCTGTCTACTAGTGGTACTACTACTCTGCAATACAGTCCAATCACATTTGAGAATGTCTTCAATGGGGGAGTCGATGGCTCTGGAGCTACTATGTCTCTGAGTTCCAAAGGATCACTTCTGCAACACAGTGCTGACCTCAGCATAAAAGGGAAAATTGGAGGCTCTGAAGCTTACCTGAACAGTGTGATCAAGGGCATCCTCTTTGATGCTGACTCTAGAAACACAATGAAACTCAAAGTGGACCAAGAAGGTCTTTCTTTCTCCAACAACCTGATTGGCTCGCTACGTGAGATGAAGACTGAAAACACTCTAGATCTTACGCTCACTTTCTGGACCCTGGCCTTCAAATCCATGACTGTCAACTTCATTAGTGACAGCACTTCCTACAAGCATGATATAGAAGTTGACCTGAAGGACTTCATCACTTCTGTGAAAGTGGACAATAATCTTAAAATCTTGGATGTTCATTTAACAAATGAGGGCTTGTTCAAACTTGAGCCTTATAAGATGGACCTGACTGGCAACATGAGGGGAGCCTTTAGAGAAGAACAGATTAGACACATGTATGAAATAGGCTATGCTGATCGGGAAGCTAAAGTGAAGTGTAGCAccactggccaaatcctaggaaCTCTGATGTCCCACAACACAGATCTGAAGGTCTCTGGGCTCTCCTCCACAGTGAAAAGTGAGActgacctcaaatccaaatccctcCGCCTAAATACTTTATATGAAATAGCTGCTTCCCCATTTGACGTCAGTATTGATGGTATGCTGAACTCTGATGGTGATGTGGATCTGTATGGAAAACACACTGGTCAGTTGTACAGCAAAGTCCTTTTGAAAGCAGAACCGCTGTCTATTACCTACACACATAATTGCAGAGGCTCCACCACCCACAAACTGGATAATGGTGCTTCAACTGAGACTAGCTTTGAAAGCAAAATGGATGGTGTAATGAATCTCCAGGAACAGAAGGCAGAATGGGAtgtgaaatccaaactgaacaaGCATGAATATAATCATGAAATCAGCACTTACAACAACCTTAGTATAATCGGTATTGAGCTCTCTGGAACAATTCTGACGGACCTTCTAAACATACCTGCAAGAGAGAACCAAGACTTTACCATCTCTGGTTTCCTGAAGTATGACAAGAACACTGAGGGCCACATCATTAACTTGCCTTTCATTGACAGCATTCCTGTCATTTTTGAGCAGCTAAAAACAACCATTGTGAATCTGAAGGACAGCAGCATTGCCTGGTTGCAGGActttaatattaaatatgaaatcagTGATAGGATTCAAGAGAAAGTAGGTGAACTGAAAAATGTTATTAACAGTTTTGACATTTCGATGTTTACTCAGGACATGAGGAATTTTATCTCCTCCATCAATATTGAAAATAACTTGGAAAAGCTCATAGCTCAAATTCCCATTAAGAAAATCATCAGATTAGTTGACTCcctaaaagagaaaataattaAGGGCATAGAAGAGCTTGAAATTGCAGGAAAGATCAATGCTGTCCATATCAAAGTAAAAGAGCTACTTGAGAAATATGAGATTGAAAAGACTTTTGAGATTATTATGGAGGTAACTTCAAAACTTCTTAAGGAATTCAAAATCACTGAAAAACTGCAGTCAGTAATTGATGTTCTGCAATCGATTGACTTTGAAGGCAAGTTTGAAAGGGCTAGGGAAGAGCTGAATGGGGTGATCAATCAACTGAAAGCAATTGACTTCAAGAAAATGATTAGTGATTTTAATGAATTCATTAACAGGATTGTAAAGAAAATTGAGTCATATGATTACAAATCAATTGTGGATGAGGTGAGACAGAAAATCAAGGTCCCTGCTTTTGGAAAGATCTATGGTGAGTTCAAACTGATCTCTCCCCAGTACAATCTCAAGACAAATGCACAGGTCCAGAATTCTACAACTACCCCAATAACCCCACAGTTCACAGCTTCTCTCAGTTCTGAGGTTAAATCCAAGGTTGACCTTCTTGCCTATTCTCTGGATGCTACTGCCCGCCTAGCTGCCCCTAAAATGAAACGTCTTGTCATTACTGAAACCCTGAAGGTTATCCACACAGCTTTCTCAGTTGATCACCAGGGTTCAGCGACCCTATATGGTACATCAGCTTCAGCCTCAGCTAAGACCATTGCTAAAGCCACAACTGAGCCCTATGCTGCAGAACTCAACAACACTGTGTCACTCATTTTGAATGGTGGCATTTCTGCATCTCTGGACACCACCTACAACCACAAGTTGAACATGCCATCTGTTGACATCTCCAGTCAAGCCACTGCAACCCACAAAACTACCATGCAACTTGAACCTAGCGCAATCTCTGTTACCATTGACAACATAGGGAATGGAAAGTGGTCCTTCCTGGACTACTCTGATGAAGGCACCCACAAGAGCAACCTGGAGGTCACCATTGATGTCAACACTGCCAAGCTAACCTTTACTAGTGACACAGACAGTGAGTCCCTAAAAATGAAACAGACTGTGAAGGCCGAATCTACCATGCTCAGCGATGCCACTCTTGAAGTCCATGCTGAAACTAAAACACCCTTCATTAAGAGCAGTGTTATTGTAGTAAATGGAAAGCTTCAGGTGGAGGACCTGAAAACTGAACTAATTGTTTCCCATGATACTGAACTAGTCGGCAGAATTGGAGGAACCCTGTCCAACAGAGTCAACTTTTTGGCCAGGCCTTTTGAGCTTGTTCTCGACTGCAAAAACAAGGGAAATGGCAAGataacactgccattcaaattaACTGGAAAGATCAACCTTCAGAATGATTACAATGTAGCCTTGAACTCTGAAGTGCAGCAAACCAGCTGGGTGACTCTGGCAAGATTCAACCAGTACAAGTATTCTCACCACTTTACAATGGATAACAACATAAATGCCATTGCACTATATACAGCAATGAGTGGTGAAGCTAATCTTGACTTGCTGAATATTCCAATCACCATACCTGAGATGACTGTACCTTTAATTGATATGAAAACTCCATCTGTAGAAGAATTTACTCTTTGGGAAGACACTGGCTTGAAGAGTCTCCTGGCTACCACCCAGCAATCATTTGACTTGAATTTCAAGCTTCAGTATCAAAAGAATCCTGAAATGTACAATATTAACCTTAACATAGAGCCAGTCTACAAAGCCATTGATATGAGTGCAAAGATTGTGAATCAAAACTTTGTGTTTGGAAGAGACATTGCAGTTGCCCTGGTGACTACCTCATATAACCAAGCTAAAGAACAGTATGACAAATTCAAGATTGATACTTCCAAGTCATTGCACAGGAGCTTCAGAATTCCTGGATATACTGTTCCCATATTAAACATTGATGTTGCTCCGTTCACAGCTGAGTTGCCTGCACTGAGTTTTGTGATCCCAAAAGAGATTAGCACACCCAGCTTCAAAGTGCCAATAGTCGGTTTTGTGGTTCCATCGTACATCCTTGTACTGCCTGTAATTCAGCTGCCAGTCATCCATGTGCCTGCAACACTGAACCAGCTGACCCTGCCAAGTCTCACTCTGCCAACAATGCAAAGGAGCATCATGATCCCTGTCATGGGCAATATGACCTATGAATTCTCTTTCAAATCTGCAGTGCTCACTTTGAATTCCAACGCTGGCCTTTACAATCAGGATGACATTGTGGCTCAGGTTGGAGTTACCTCAACCTCTGTCTTTGAAATTCTCAAAAGCAAACTTGATGTGAAATCCACCCTAAAAAAGAAGAGAGGTTTGAAACTGATTACTACTATGTCCCTGGAGCACACAAATGCTCAGGGCACCCATGAAAGCACCATCACCCTCAACTGGAAGGGCATGGAAACCTCAATGGCAACTGTTGGAAAGATCATGCTGCCCATTGAGACCCTTGAATTTGATCAGAAATTAACTGGAAATTCCAGGAATGGCATCTCAGCTTCAGTCTTCTCTCCATCCACTGGATTCCTTGGATTCCAGTTGCAGAAGACCCAATCACAGGTGGCTGGAAGACTGTTCGGTCGCTACTTGTCTGCACCTGAAAATGATGTGGAGATACTCACTGTGAAAGCATCTCTCAAACATCCAGAAAAGCTGAACTTACAGACCTCCTGGAATGCAGAGGTTCCCTATGAGATGCTCCTGGGGTTGAAGGAAAGGGTTCCTGATATTACTTCTGCACTGACCCTCAAAGATGCAGTCTCAAACACTATTGAGAAGGTATACAGTGAAATCCCCAGAACTGTGAACACCCTGCAGAGTGGAATTGAACAGATCAAAGATCAGAGCAAGATAATGTACAGAAGGGCTGCTGAAAACTTTAAAGACACAAACCTGCAGGAAATTAGCAGAGAACTTTCAGTCTATTTCAGGTATATCTTAAGCCAGTACCAGAATAACATAAAGGTAATTCTGGATGCTGTAATACAGTTCCTCAGAGAAACCAAATTCCTGATTCCTGGAATTGAGGAGGAGCGCACTGGACTCGAGATCTACCAGATGGTTAGCCACTATGTAACCATGTTGATTGAAGATGCCATACGGGAAGTCCCAGAATGGGTTGCCTTCCACACTAAAACCTTCATTGAATTAGTTGAAGACACTGTGATTACACTGCCAGGTTCCAACCACTTAATTAGCGGGAAAGAAATTGTTGATGACCTGAAATCCATCATGGAAAATGCCCAGGCCAAAGCTATCGCAATGGTGAGGAGCCTTCAGGCTGTCAGACTAGAGGACATGCTGGAGAGACTGAGGGATTTGCTTCTTTACACTGTCAACATAGCTGATGATTTCATCACCTCCCTGATGTCACAGAATGTGGATAATCTCTCAGCCTGGGTTAATGCCGTCTATTCTGATGCTGTGAACTCTGAAGTCTTCAGTGACGTATCTGTTCGGCTGAAGGAGGCTGGGGCAGCTGCTGGAGAAAAGCTAGGATTGGCCAAAACTAAACTGCAAGAAGTCTACTCCCAGATGACCATGGAAAAGCTGAATTCCATCCTTCAGTCCTGGATTGATGCACTTGCCAAACACCTCAACTCATTTAATAACAAAATCACTGAGTTTCTGAAGCAGATTTCCCAAAATGTGCAGCCCTTCGTGAGAGTGAGTGATAACAAAATGGACATTGACATTCCTCTTCCGTTGCCTTGGAAATCCTACAAAGCTGTGCCCACAGAGGACGAACAGTGA

Transcript

SKAU_T00190070

Protein

SKAU_T00190070

EYTATIAYELLKEGKDGRQKVDALKITLKAEGEKSTEAVGTIKYNRNRNMLTTDIQIPDYDLEAGIRLGVTDSSSKGKKITFDITNKNIPQLSLVCRAKLEAMTDGMLQLQLTVPSLKTDATVTVTLQSAEGLTLGIESVINIPETSSKENVIFRYDENKVEVEFKSDMSSEIQKLFPYAEDYQKMLQQFLDDVLDQKVAKTDMNIRHIFSKSLEAGNIWLDKIAADIPYVENLRSIPDITLPSVPKKLFLKSESMFRYQFNKDRFSITLPLPLGGQSSTDLKIPSTVTIPRLFVPKIGLDIPSTEISIPTFSIPPSYELPLPLIGMAEVSAKVNSNFYNWEGSVSGGNNTVDTPSYIAKYQIMANSPLDLLSYKTEGTVLITDTTESMKTLVNSSLNHKFVDASFSFVESMTIADSVKATGNYKIEASSPLGLSSSMYVTAQSTYTPEEVAGDANFDGAIKLGSLSASTSYTQSYIIHPSRREAKGESTLRVDTPLVGILNKVKGAYANEELSMESTTNMNNKHLEHVTKVDISYKDSKVSLKSDSVSTAISTTLRNQVEFAASAESASIRVESQVDNSKNRAYSLLSGSLTAHSLELNSDASINLKHKQGSHKATLMINSGGLSTSGTTTLQYSPITFENVFNGGVDGSGATMSLSSKGSLLQHSADLSIKGKIGGSEAYLNSVIKGILFDADSRNTMKLKVDQEGLSFSNNLIGSLREMKTENTLDLTLTFWTLAFKSMTVNFISDSTSYKHDIEVDLKDFITSVKVDNNLKILDVHLTNEGLFKLEPYKMDLTGNMRGAFREEQIRHMYEIGYADREAKVKCSTTGQILGTLMSHNTDLKVSGLSSTVKSETDLKSKSLRLNTLYEIAASPFDVSIDGMLNSDGDVDLYGKHTGQLYSKVLLKAEPLSITYTHNCRGSTTHKLDNGASTETSFESKMDGVMNLQEQKAEWDVKSKLNKHEYNHEISTYNNLSIIGIELSGTILTDLLNIPARENQDFTISGFLKYDKNTEGHIINLPFIDSIPVIFEQLKTTIVNLKDSSIAWLQDFNIKYEISDRIQEKVGELKNVINSFDISMFTQDMRNFISSINIENNLEKLIAQIPIKKIIRLVDSLKEKIIKGIEELEIAGKINAVHIKVKELLEKYEIEKTFEIIMEVTSKLLKEFKITEKLQSVIDVLQSIDFEGKFERAREELNGVINQLKAIDFKKMISDFNEFINRIVKKIESYDYKSIVDEVRQKIKVPAFGKIYGEFKLISPQYNLKTNAQVQNSTTTPITPQFTASLSSEVKSKVDLLAYSLDATARLAAPKMKRLVITETLKVIHTAFSVDHQGSATLYGTSASASAKTIAKATTEPYAAELNNTVSLILNGGISASLDTTYNHKLNMPSVDISSQATATHKTTMQLEPSAISVTIDNIGNGKWSFLDYSDEGTHKSNLEVTIDVNTAKLTFTSDTDSESLKMKQTVKAESTMLSDATLEVHAETKTPFIKSSVIVVNGKLQVEDLKTELIVSHDTELVGRIGGTLSNRVNFLARPFELVLDCKNKGNGKITLPFKLTGKINLQNDYNVALNSEVQQTSWVTLARFNQYKYSHHFTMDNNINAIALYTAMSGEANLDLLNIPITIPEMTVPLIDMKTPSVEEFTLWEDTGLKSLLATTQQSFDLNFKLQYQKNPEMYNINLNIEPVYKAIDMSAKIVNQNFVFGRDIAVALVTTSYNQAKEQYDKFKIDTSKSLHRSFRIPGYTVPILNIDVAPFTAELPALSFVIPKEISTPSFKVPIVGFVVPSYILVLPVIQLPVIHVPATLNQLTLPSLTLPTMQRSIMIPVMGNMTYEFSFKSAVLTLNSNAGLYNQDDIVAQVGVTSTSVFEILKSKLDVKSTLKKKRGLKLITTMSLEHTNAQGTHESTITLNWKGMETSMATVGKIMLPIETLEFDQKLTGNSRNGISASVFSPSTGFLGFQLQKTQSQVAGRLFGRYLSAPENDVEILTVKASLKHPEKLNLQTSWNAEVPYEMLLGLKERVPDITSALTLKDAVSNTIEKVYSEIPRTVNTLQSGIEQIKDQSKIMYRRAAENFKDTNLQEISRELSVYFRYILSQYQNNIKVILDAVIQFLRETKFLIPGIEEERTGLEIYQMVSHYVTMLIEDAIREVPEWVAFHTKTFIELVEDTVITLPGSNHLISGKEIVDDLKSIMENAQAKAIAMVRSLQAVRLEDMLERLRDLLLYTVNIADDFITSLMSQNVDNLSAWVNAVYSDAVNSEVFSDVSVRLKEAGAAAGEKLGLAKTKLQEVYSQMTMEKLNSILQSWIDALAKHLNSFNNKITEFLKQISQNVQPFVRVSDNKMDIDIPLPLPWKSYKAVPTEDEQ

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06448	DUF1081	Domain of Unknown Function (DUF1081)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009454	Domain	Lipid transport, open beta-sheet	Interproscan
IPR052418	Family	Apolipoprotein B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13769	APOLIPOPROTEIN B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005319	Molecular Function	lipid transporter activity	Interproscan
GO:0006642	Biological Process	triglyceride mobilization	Interproscan
GO:0006869	Biological Process	lipid transport	Interproscan
GO:0030301	Biological Process	cholesterol transport	Interproscan
GO:0034359	Cellular Component	mature chylomicron	Interproscan
GO:0034361	Cellular Component	very-low-density lipoprotein particle	Interproscan
GO:0034362	Cellular Component	low-density lipoprotein particle	Interproscan
GO:0042632	Biological Process	cholesterol homeostasis	Interproscan
GO:0042953	Biological Process	lipoprotein transport	Interproscan
GO:0050750	Molecular Function	low-density lipoprotein particle receptor binding	Interproscan
GO:0120020	Molecular Function	cholesterol transfer activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-