Gene detail

Detailed information of SKAU_T00188620 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00188620	ARGINYL-TRNA SYNTHETASE	CM056381.1	17770062	17804860	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00188620

ATGAAGACTGTATTGGGTGACGTTGCCGATACCACTTTCCGGACAATAACCTCTGGGTTACAGTTCCTTGGATCCAATGATGTCAATTATGAAGACCCCACCATTGATGCCGATTTCACCAAGGGCGGGTACCCTTTACAGAAGCCTCTGTCTGCCTTCCGTAGCAATTCCTATCCTGGGAAAGTACAGGGAGAAGAGGAGCTCATCCTCAAAGGCATCCCTTTCTATCCGACCAATGTCACGGACCTTCTGGGAAACAGGAGCACCTTTGGGGAAGAGGGCAGCACCATCCAGTGTGGAGAGAACTTCATGGACATGGAGTGCTTCATGATACTCACCCCTAGCCAGCAGCTGGCAGTGGCGTTGATGGCGCTCACATTGGGCACTTTCACAGTGCTGGAGAACTTGGTGGTGCTGTGCGTGATCCTCCACTCGCGCACGCTTCGCTGCCGACCCTCCTACCACTTCATTGGCAGCCTGGCCGTGGCTGACCTGCTGGGAAGCGACAGTCCCAACGTTTTCCTCTTCAAACTGGGCGGGGTGACGGCCTCCTTCACCGCCTCTGTGGGCAGCCTTTTCCTGACCGCCATCGACCGCTACATCTCCATCCATAAGCCTCTGGCCTACAGGCGCATCGTCACCCGCACCAAGGCCGTCATCGCCTTCTGCATGATGTCGGTGTGCTCGGACATCTTCCCCCTCATCGACAAGAACTACCTGATGTTCTGGATCGGGGTGACCAGTGTGCTGGTCCTCTTCATCATCTACGCCTACATGTACATCCTGTGGAAGGCTCACCATCACGCCGTGCGCATGCTTAGCCGCACCTCCCAGAAGAGCCTGGTGGTGTATTCGGCGGACGGCACCAAAGTGCAGACCACGCGGCCGGAGCAGACCCGTATGGACATCCGGCTGGCCAAGACGCTAGTGCTCATCCTAGTGGTGCTGATCATCTGTTGGGGCCCCGTGTTGGCCATCATGGTCTACGACCTCTTCTGGAGGATGGACAACTTCACCAAGACGATCTTCGCCTTCTGCAGCATGCTCTGCTTGCTCAACTCCACCGTCAACCCCGTCATCTATGCCCTGCGAAGCAAGGACCTGCGCCACGCCTTCTTCAGCACCTTCCAAATGTGCCGAGGCAGTGCTCAGCCGCTAGACAACAGCCTGGAGTCCGACTGCCAGAACCGGGGCGTCAACATTTCCGCCAACAGAGCCGCGGAAAGCTGCAGACATCTGCGGAAGCCGTCTGACTTGTGGTCTCGAGATGCTGGATTTgctctggaggaggaggaggagaaggaggaggaggaagggAAGACATATTGCGTCGAAGCTTTCAAAGGCTTTGGGACAACCGGAGGAGACCTTCATTTCATCTGTTTCCACCATTCCCGTCTCGAAGAAACACTAAAGCCTGACAATGTTGTTGAAGAAATACTGGTCGGACGTGGAGCGATAAACTTTAAAATCAGCAGAACAGTTTTGGCAGAGaaaatttTAGAAAAGCTACATCGGGAGGGTCACTTGTTTGGAGTGAAAAGTGAACTTTTTGGCAGTCTCCAGAAAGGAAGAACGTTGGTCGAGTTCAGTTCACCAAATGTCGCCAAAAAGTTCCATGCTGGACACCTACGTTCCACTATAATTGGTAACTTCATTGCCAATCTAAAAGAAGCTGTGGGAAATGAAGTCATACGGATGAATTATTTGGGTGACTGGGGCATGCAGTTTGGGTTGCTGGGAACTGGCTTTCAGAACTTCGGTTCGCAGGAAAAACTGACGGTGAACCCATTACAGCACCTATTTGATGTGTACGTCCGGGTCAACAGGGAGGCGGAGAGCGACGAGAGCATCTGGCTCGCAGCCAGAGAGTTCTTCAGATGCCTGGAGCAAGGAGAGGAGCAGGCTCTGTCGTTATGGCAACGCTTCAGAGATATCACCATAGAAGAGTACCAGAAGATTTACAAGCGTTTAGGGGTCCACTTCGACGAGTACTCGGGGGAGTCGTTCCATCAGAGCCAGGCCCAGGAGGTGCTGCGGCAGCTAAAGGACCGAGGCCTGCTGCAAAGCACGGAGAAGGGGACAGGTGTCGTGGATCTCTCCTCAGCCAAAGACATGTCTTACTACTCCACTGTGGTGCGTAGTGATGGGACCTCGCTCTATATCACCAGAGATATCGCAGCAGCCGTAGCTCGGAAGGAAAAATATGCATTTGATGAGATGATATATGTGACAGATAAAAGCCAGAGCGGCCATTTTCAGCAGATGTTCCAGATTCTCCTGGCCATGGGATATGAGTGGGTGGAGAGCTGTCTCCACGTGCCCTTTGGCCTGGTGCAGGGCATGAAAACACGGCAGGGAGAGGTGGTCTTCCTGGAGGACGTGCTGGATGAGGCTCGCTCCAGGATGCTGAAGAACATGAAGGAATCCAGGACCACTAAAGACCTGGAAGATCCTGAAGACACAGCACAGAAAGTGGGAATTAGCGCTCTCATAGTTCAGGACTTTAAAGGCCCACTTGTATCTGACTACAAGTTCAGCTGGGACCAAGTGCTCCAGGCCCAGGGGGACACTGGCGTATTCCTGCAGTACACACATGCCCGGCTCTGCAGTCTAATCCGGATGCATGAAACCAGTTTGGAGGCAACCTTTGATCCACGGCTTCTCCAGGAGCAGTGCAGCATCAATATACTGCAGCACCTTCTACGGTATGATGAGGTGCTGTACCGGTCATTACAGGACCTGCAGCCCAAACACCTGGTCAACTTCCTCATGACGCTCTGTCACCTGGTCGCCACGGCTCACAGGGCACTGCCTGTGAAGGGGAGCCCCCCAGCACTGGCTCAGGCCAGGTTGCAGCTGTTCAGGGGTACATGCACAGTGCTGGCCAATGGGATGAGGATTCTAGGCATTGTACCTGTTGAGAAGATGTGA

Transcript

SKAU_T00188620

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00750	tRNA-synt_1d	tRNA synthetases class I (R)	Family	Interproscan
PF05746	DALR_1	DALR anticodon binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR000810	Family	Cannabinoid receptor type 1	Interproscan
IPR001278	Family	Arginine-tRNA ligase	Interproscan
IPR001412	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR002230	Family	Cannabinoid receptor family	Interproscan
IPR008909	Domain	DALR anticodon binding	Interproscan
IPR009080	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR035684	Domain	Arginyl-tRNA synthetase, catalytic core domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11956	ARGINYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004814	Molecular Function	arginine-tRNA ligase activity	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0004949	Molecular Function	cannabinoid receptor activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006420	Biological Process	arginyl-tRNA aminoacylation	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-