Gene detail

Detailed information of SKAU_T00184220 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00184220	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	CM056381.1	6324920	6361462	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00184220

CACGTGTTTATTAGTATTTCCGGTAGTTTGGCTAAACATGTGAGAAACGTTTGTTTCTGCCGTAGAATTACTGTTTTACGAAATATAATAACTTGTAATAAAATGGAGATCTTTGGAGAGGACTTTGTGGGCATGACGCCACAACAAATTGCCGCTCCTGTCAACACGGTGGAGGAAAAATGGAAACTTCTGCCAGCCTTCCTAAAGGTGAAGGGCCTTGTAAAGCAACACATCGACTCCTTCAACTACTTCATTAATGTTGAGATAAAGAAGATCATGAAAGCGAATGAGAAGATCACCAGTGATGCAGACCCAATGTGGTACCTAAAGTACCTAAATATCTATGTGGGCATGCCTGATGTAGAGGAAAGCTTCAATGTGACGCGGCCGGTCTCTCCCCACGAGTGTCGGCTGCGAGACATGACGTACTCCGCCCCCATTACAGTGGACATCGAGTACACGCGCGGCAGCCAGAGAATCATCCGCAACGCACTGCCCATTGGAAGAATGCCTATCATGTTGCGAAGTTCCAACTGTGTCCTGACAGGAAAGACACCTGTAGAGTTCTCAAAACTCAACGAGTGCCCCTTGGACCCAGGAGGATATTTCATTGTAAAGGGACAGGAGAAGGTCATTCTCATCCAGGAGCAGTTGTCCAAAAACCGCATCATCGTGGAGCAGGACCGGAAGGGTGCGGTCGGAGCGTCTGTGACCAGcTCCACTCATGAGAAGAAAAGCAGGACCAATATGATCATGAAACAGGGCCGGTTCTACCTGCGCCACAACACGCTCTCAGAGGACGCTCCCATCGCCATCATCTTCAAGGCCATGGGCGTGGAGAGCGACCAGGAGATCGTGCAGATGATTGGCACAGAGGAGCACGTAATGGCCGCCTTCGCCCCAAGCCTGGAGGAGTGCCAGAAAGCCCAGATCTTCACACAGATGCAGgCCCTGAAATATATTGGGAATAAAGTCCGTCGACAGCGCATGTGGGGAGggccaaagaaaaccaaaatggAGGAAGCCAGAGAGCTCCTGGCCTCAACTGTCCTTACGCATGTACCTGTGAAGGAGTTTAACTTCAGGGCCAAGTGCATCTACCTGGCTGTCATGGTGCGCAGAGTGATATTAGCTCAAGGGGCCAATAAGGTGGACGACAGGGATTACTACGGCAACAAGCGTCTGGAACTGGCtggacagCTGCTGTCGCTGCTGTTTGAGGACCTGTTTAAGAAGTTTAACTCTGAGCTGAAGAAGATCGCCGACCAGATCATCCCCAAGCAACGAGCAGCGCAGTTCGACGTGGTTAAACACATGCGACAGGACCAAGTCACTAACGGCATGGTGAACGCTATCTCCACTGGTAACTGGTCTCTGAAGCGGTTTAAGATGGACCGGCAGGGTGTGACACAGGTACTGTCCCGTCTGTCCTACATCTCGGCGCTTGGGATGATGACCCGTATCTCCTCTCAGTTTGAGAAGACCAGGAAAGTGAGCGGCCCCCGGTCTCTCCAGCCCTCCCAGTGGGGCATGCTCTGTCCGTCCGATACCCCAGAAGGAGAGGCATGTGGGCTGGTGAAGAATCTGGCTCTGATGACTCACATCACCACTGACATGGAGGACGGTCCCATCATCAAACTGGCCTTTAATCTGGGAGTGGAGGATGTGAACCTGCTGTGTGGAGAGGAGCTGTCCTACCCCAGTGTCTTCATTGTGTTCCTCAATGgtAATATCCTGGGCGTTATCAGGGATCATCAGAAGCTGGTGCACACATTCCGGCTGATGAGGAGAGCGGGGTTCATCAATGAGTTTGTCTCCATCTCCACCAACCTGACGGACCGCTGCGTCTACATCAGCTCTGACGGGGGCCGGCTGTGCAGGCCCTATATCATAGTGAAGAAAGGCCAGCCGACGGTGAAGAACAGGCACATAGAGGAGCTCACGCAGGGTTACAGGAACTTTGACGACTTTCTCCATGAAAGCCTGGTGGAGTATCTGGATGTAAACGAGGAGAATGATTGCCAAATAGCTCTATACGAACACATGATTTACAAGGACACCACCCCACTTGGAGATCGAACCCTTCACTCTGTTGGGGGTGTGTGCTGGCCTTATCCCGTACCCCCACCATAA

Transcript

SKAU_T00184220

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04561	RNA_pol_Rpb2_2	RNA polymerase Rpb2, domain 2	Domain	Interproscan
PF04563	RNA_pol_Rpb2_1	RNA polymerase beta subunit	Family	Interproscan
PF04565	RNA_pol_Rpb2_3	RNA polymerase Rpb2, domain 3	Domain	Interproscan
PF04566	RNA_pol_Rpb2_4	RNA polymerase Rpb2, domain 4	Domain	Interproscan
PF04567	RNA_pol_Rpb2_5	RNA polymerase Rpb2, domain 5	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007642	Domain	RNA polymerase Rpb2, domain 2	Interproscan
IPR007644	Domain	RNA polymerase, beta subunit, protrusion	Interproscan
IPR007645	Domain	RNA polymerase Rpb2, domain 3	Interproscan
IPR007646	Domain	RNA polymerase Rpb2, domain 4	Interproscan
IPR007647	Domain	RNA polymerase Rpb2, domain 5	Interproscan
IPR015712	Family	DNA-directed RNA polymerase, subunit 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001056	Molecular Function	RNA polymerase III activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0032549	Molecular Function	ribonucleoside binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-