Gene detail

Detailed information of SKAU_T00179840 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00179840	GC-RICH SEQUENCE DNA-BINDING FACTOR	CM056380.1	109662249	109675440	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00179840

ATGTTCAGTAAAAAGCCTAAAAGAAACTTCAGGACAAGGCGCAATGAGTCAAGTGAGGAAGACGAAGAGAAAACTAacgaggaagaagaaaaaagcaTCAAACCAGCCTGCGCTCTACGACGGCCAAAGTTGCCGCAAAGCAGGGGGATTTCCTGTACTTCCAAGCCGGAGAAGGCGACTGCCAAGACGGAGTCGCATAACGTTAGTGCTGAAGATTCTGACGATAATGTTACAGACGAGAAACTGTTAGAGCTTCCTGAACAGGAAACCCTGACGAATGACACGCCAAGTTCTTCTGATGAAAAAGAAGATGCTATCCCTGATGCTAAGCAGATCCGTGCGGCAAGGAAACAGCGGAGAGAGGCCAAAGCACACAAGGATTACATCCCCCTGAACCGGGAGCAGGAGGGCTCTCGCTtatcagaggaggaggaggacgagtcTGAGAGGGACAGCGATGAGATCGATGACCATGAGCGCCGAATCCAGTTTGCCCCCAAGCTCAAAACCCTTAGAGAGCGGCTAGCTGAGGAAATGAgtgGAAGAGGCAGTGAGGACGATGGAACAGACAGTGAGGAAGACGAGGACCGGATTCTGTGGGAGGAACAGCAGATCAGAAAAGGAGTCCGGATGCAAAAGCACTCTGCCAGAAACTCTTCCCAGGAGGTCGCAAGGCGGAAAAGGAAATGCGACATTCCCGAATCCCTTCCGCAAGTAAGCATCGGCATCATCAAGAAGAGAGTCGGTGCAAAGTTGGAGACGTTAAGGCAGGTGAATCGGGGCAGAGCGATGGAGAGACAGAGGATCCAGGTGGAGATGGAGAGCGCCAGGGCTGCTCTGGAGCAGCTGGAGAAAGGGTCCGCTCACAAGCAGCACAGGTTCTACAAGGCCATGCGGCTCTACACCCAGAACCTGCTGCAGTGCCTGGCAGAGAAGACGGTGGAGATTAATGCAGTGGAACTGGAAGTGCACACTCTCCTGATTGACCAGGCGGAGGCGCTGTTGTCTCGCAGGCGCGAGGCCGTGCGGGAGGAGTCCACGAGGCTCCAGCTGGTGTCCTATAACACCGATCCATCCGACAACGGATATGCAGGCCAAGCCCTGGAAGAGGCACAGGGGCAAAGTCAGTTATGTGAGACAGCGGAAGCTAACTTTGGGGACCTGCCAGCGGATGAAGAACCCCAGCCTGAGGAGGCTGCTGAGCTGTGCAGGAAGAGAGATGAGATCATGAGGGAAGCGGAGAATATCTTTGCGGACGTCCATGAAGACTTCTCAGACGTGAAGAACATCCTCTCGAAGTTTGACGAATGGAGAGTCTCGTTCGCGGAGTCATACGACAACGCGTACATCGGCCTCTGTCTCCCCAAACTCCTCGCCCCTCTTATCAGACATCAGCTCATCGGCTGGGACCCCTTAAGTACTGACAGCGAGGACATCGAGGCCTTCCCGTGGTATACTGCCGTACAGCAGTTCTGTCAGAAACGGGGATCCAAGGAGGTGGAGAACCCAGATAATTCAATCCTGGCGGCTATCATTGAGAAGACCGTTGTGCCAAAAATCCAAGGTTTCGTGGAGCTGGTGTGGGACCCTCTGTCCACGGGACAGTCTCACTGCCTGGCCAGTCTTTGGCGAAGCCTCTGGGATGATTACCTGGTCTTCCGTGACGAAAAGAGCAAACCTGTCAAGGCTCTTCTGGAAGCCGTTATAGATCGAATGAGGAGCGCTGTGGATGTAGATGTCTTTATCCCTCTTTACCCAAAAAAgTTTTTAGATGACACATGTTCCCCACAATTTCAGTTTCAAGACAGGCAGTTCTATTCTGCTGTAAAGcTTCTGCACAACATCACACTTTGGCACGGTCTGGTTCCTGAGGACGTGTTGATAGAACTGGGACTGAACAAGCTCCTGAGCCGCTACCTCATGATTACTCTACGGAACGCACCCTGCGAAAAGCACTCCGTGGAGAAATGCAAAaagGTTGCTGCGTGTTTTCCAAAGTCCTGGTTTGAAGATGTGAACGACAGTCCGTCCATTCCCGAACTTCAAACCTTCAGCAAGCACCTGCTTcagactgcacacacactgtgcaaAAAGAGCCCAAACACCAGCACCATAAGGGATATCGTGACGGATCTATTGACTCTTCTGAGAAACATGAAAGAGCTGGACAGTGTTACAGAGATAGTTGAAAATTACCACTTTGAGGGATTTTAA

Transcript

SKAU_T00179840

GTGAGAAGTAGTGGAGGAAGCAGAAAAGAGGAGACAATCATGACTAGGTTAAGAATAGGACACAGTAATCTAAACAGTACACTTCACATAATAGGGAAGCATCCAACTGGTTATTGTGATCATTCAGGTACCAGAAACTGTAGAGCATGTACTTATTAGTTGCAGGAAATATGTATTAGAGAGAATGGACATGATGGAAGAAATGAAAAGATTAGGGCTAACAGGAGCAGGAGTAAAGAACATactggagtgtggtggaagtggacaaggcagaaGATGCTTGGTCAGCTTCCTAATAAGAACTGGTGAGGAAAATTGAATATACTGGACACtataggagttaactaactccagaagatggcagtagtgcaacattaaggatgcaagctgctgttaaaacccaaagaagaagaagaagaagcagaaccCCCCAGTGCGCGTGCGCTTCATACAAGCTTTGctcagttggctaacgttagcccgcTGGATTTGGATTGAATCATGTTCAGTAAAAAGCCTAAAAGAAACTTCAGGACAAGGCGCAATGAGTCAAGTGAGGAAGACGAAGAGAAAACTAacgaggaagaagaaaaaagcaTCAAACCAGCCTGCGCTCTACGACGGCCAAAGTTGCCGCAAAGCAGGGGGATTTCCTGTACTTCCAAGCCGGAGAAGGCGACTGCCAAGACGGAGTCGCATAACGTTAGTGCTGAAGATTCTGACGATAATGTTACAGACGAGAAACTGTTAGAGCTTCCTGAACAGGAAACCCTGACGAATGACACGCCAAGTTCTTCTGATGAAAAAGAAGATGCTATCCCTGATGCTAAGCAGATCCGTGCGGCAAGGAAACAGCGGAGAGAGGCCAAAGCACACAAGGATTACATCCCCCTGAACCGGGAGCAGGAGGGCTCTCGCTtatcagaggaggaggaggacgagtcTGAGAGGGACAGCGATGAGATCGATGACCATGAGCGCCGAATCCAGTTTGCCCCCAAGCTCAAAACCCTTAGAGAGCGGCTAGCTGAGGAAATGAgtgGAAGAGGCAGTGAGGACGATGGAACAGACAGTGAGGAAGACGAGGACCGGATTCTGTGGGAGGAACAGCAGATCAGAAAAGGAGTCCGGATGCAAAAGCACTCTGCCAGAAACTCTTCCCAGGAGGTCGCAAGGCGGAAAAGGAAATGCGACATTCCCGAATCCCTTCCGCAAGTAAGCATCGGCATCATCAAGAAGAGAGTCGGTGCAAAGTTGGAGACGTTAAGGCAGGTGAATCGGGGCAGAGCGATGGAGAGACAGAGGATCCAGGTGGAGATGGAGAGCGCCAGGGCTGCTCTGGAGCAGCTGGAGAAAGGGTCCGCTCACAAGCAGCACAGGTTCTACAAGGCCATGCGGCTCTACACCCAGAACCTGCTGCAGTGCCTGGCAGAGAAGACGGTGGAGATTAATGCAGTGGAACTGGAAGTGCACACTCTCCTGATTGACCAGGCGGAGGCGCTGTTGTCTCGCAGGCGCGAGGCCGTGCGGGAGGAGTCCACGAGGCTCCAGCTGGTGTCCTATAACACCGATCCATCCGACAACGGATATGCAGGCCAAGCCCTGGAAGAGGCACAGGGGCAAAGTCAGTTATGTGAGACAGCGGAAGCTAACTTTGGGGACCTGCCAGCGGATGAAGAACCCCAGCCTGAGGAGGCTGCTGAGCTGTGCAGGAAGAGAGATGAGATCATGAGGGAAGCGGAGAATATCTTTGCGGACGTCCATGAAGACTTCTCAGACGTGAAGAACATCCTCTCGAAGTTTGACGAATGGAGAGTCTCGTTCGCGGAGTCATACGACAACGCGTACATCGGCCTCTGTCTCCCCAAACTCCTCGCCCCTCTTATCAGACATCAGCTCATCGGCTGGGACCCCTTAAGTACTGACAGCGAGGACATCGAGGCCTTCCCGTGGTATACTGCCGTACAGCAGTTCTGTCAGAAACGGGGATCCAAGGAGGTGGAGAACCCAGATAATTCAATCCTGGCGGCTATCATTGAGAAGACCGTTGTGCCAAAAATCCAAGGTTTCGTGGAGCTGGTGTGGGACCCTCTGTCCACGGGACAGTCTCACTGCCTGGCCAGTCTTTGGCGAAGCCTCTGGGATGATTACCTGGTCTTCCGTGACGAAAAGAGCAAACCTGTCAAGGCTCTTCTGGAAGCCGTTATAGATCGAATGAGGAGCGCTGTGGATGTAGATGTCTTTATCCCTCTTTACCCAAAAAAgTTTTTAGATGACACATGTTCCCCACAATTTCAGTTTCAAGACAGGCAGTTCTATTCTGCTGTAAAGcTTCTGCACAACATCACACTTTGGCACGGTCTGGTTCCTGAGGACGTGTTGATAGAACTGGGACTGAACAAGCTCCTGAGCCGCTACCTCATGATTACTCTACGGAACGCACCCTGCGAAAAGCACTCCGTGGAGAAATGCAAAaagGTTGCTGCGTGTTTTCCAAAGTCCTGGTTTGAAGATGTGAACGACAGTCCGTCCATTCCCGAACTTCAAACCTTCAGCAAGCACCTGCTTcagactgcacacacactgtgcaaAAAGAGCCCAAACACCAGCACCATAAGGGATATCGTGACGGATCTATTGACTCTTCTGAGAAACATGAAAGAGCTGGACAGTGTTACAGAGATAGTTGAAAATTACCACTTTGAGGGATTTTAAGGACTCAGCTTTTGGTAGGTAGGTTTGTGTGTATGACTGGATGTATTACTTTGTTCTTTTGTATAAAACCTAAATTTACGGTGACAATTAAATTTTCTACACCCATAAATTTAGCATTTTTGTACTTAACTTGACGTCTAACAATGTTTTCTTGAAATTATTTCTCACGCAATCAAACAGAATGGTAAAGGCAACTTAGGAGCTGGACATACACTTTAGCGATCAACATTTTTATAGATCATCAATTGGAACTCAAAGGAGACTGAGTCCCTCTTCAGTTATGCCATTCACATTGTATCCATGGTAACAGCTGAGGTAAACCTACGGATACAATCCCATTGCCGTGACTAGTGGTAATAACATTCCAACATCCCAGGAAAAGTTTGAGCATTTGCTATAGATGAAGGCATTACTTATGCCATCTGGCACAAATGGAGGTTGCAATTATAAATACACTGacaattgcttagcctatataggaggtgtaaaatccaggttcagaaagtaaaaatcctcccctgTATTTGttaattggcacaattcttcagccaggtggtagaactaattagtgaaatcagcggacagtgtgtggatggaagacacacgtggcaggacttttactttctgacccctggattttacacctataTGCC

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	GCFC

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07842	GCFC	GC-rich sequence DNA-binding factor-like protein	Family	Interproscan
PF15458	NTR2	Nineteen complex-related protein 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012890	Family	Intron Large complex component GCFC2-like	Interproscan
IPR022783	Domain	GCF, C-terminal	Interproscan
IPR028211	Family	Pre-mRNA-splicing factor Ntr2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12214	GC-RICH SEQUENCE DNA-BINDING FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000390	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0071008	Cellular Component	U2-type post-mRNA release spliceosomal complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-