Gene detail

Detailed information of SKAU_T00172410 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00172410	OTU DOMAIN CONTAINING PROTEIN	CM056380.1	83924907	83931994	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00172410

CGGTGCGGGGCTGTAGTCACAGAAACAGATGGAGAAACAAACTCCCATTTAGGCTATCAGAATTCGGTTGCTAAGTTTACTTATGGATTTCTGTAATATTATTAGCCGTTTCAAAACCACTACTATTATCATCGACACCAAGAGAAAGgtccttttttttgttttacaagcATCATAAGAGCGTGCGAGTGAGTCTGCACTGGGTTGTATTCCATGTAAATGGTCTCTTAGTGAATCAGCCAGTCAGTACATGTACATGTCCAGTAAGCTATCAGGAAAGCTGGCGCACAAGAAGAGTGATGTGGAGAGCAAGCGAGACGTGCAAACTGCTTGCAGGGCTTTGGCTAATGATTGGAAGAATCGCCCTCTGGGAGAGGAAGTGGGTGATGAATTTGTCAGCTTCGCCAATCAGCTACAAGCCCTGGGACTGAAACTGAGGGAGGTGCCCGGAGACGGGAACTGTCTGTTCCGAGCCCTGGGGGATCAACTGGAAGGTCACTCCAGGGGACACCTGCAGCTGCGGCAGGAGACTGTACAGTACATGCAAGCTCACCGGCAGGACTTTGAGCCCTTTGTAGAGGATGATATTCCCTTCACAGAGTACTTGTCGAACCTGTCGCAGCCAGGCACTTTCGCAGGCAATGATGCGATCGTGGCATTTGCTCGCAGCCACCAGCTGCGCGTCATCATCCACCAGCTCAACACTCCTATGTGGGAGATAAACGGCTCTGATAAACCTGCGGGTCAAGAGCTTCATATTGCCTATCGCTATGGTGACCATTACGATAGTGTACGGCCAGTTGGTGACAACTCTGAGAGTCCCGCCCTTCTGCATATTGAGAACCTGAACAGGTCTAGGGGTCAGTGTGCGGCTCGGCAGCCAGGAGACAGGCAGAGGTACAGACAGGATGCTTCCCCTCCCACCCATTCCGATGACGAGGAATTGATCCTGCGCCGGCTTGCGTCCCAGAGACCATCTGGTCAAGGGGAGAGCAGTGTGTCACACTCCGCCCTATGGGAGGAGTCAGGAACAGGCGCACGCATCTTTGGCCCTGTCACATCAACAGAGCACAGTGACGGCTGCACCACCCATGGAACTAAAGTAGCAAGTAAACAGAGGAAGGAACCGCTGTGTCTGGAGAACAAAAAGAGTCAAGAGGAAAAGCTGAAAGTCCAACCAAGCAGAGCTCCACAGAACCAGAACCAGTCAGAACCAGCCTTCAACAAACTCAGCATCTAGAAAGGCACTGAGCACATGCCATTCCAGAATGTTAACTGCTAACTGGTTGGGTTGAGGACTCTTAGGTCTTTGCTGCTAATGGAGTTTCTGAGTGGGCAGAACCAGGGATGTTGTTTTTGTGATTTTCAGAGTATGCACAGTGGTGCATGTGCAGGATTCTGTTGCTCTTCGGTTTAAGAGGGTGAAATATTTCCGCCACAGAGGCAAGTTGTTTGACAGACACAGAGGCAGACACACTTTCTCTGCAATGTCCGCACATTGTGGGGATTTGGCCTTGATTTCATTGTTGGCAGGTATGTGGTATGAACGCAAGATGCTAATTAACGTCTAAAAATCTAGGAGCAGAACCAGTTTAATTTAATGAAGGATGTCCCTCTGTTCCTGCTGCAGAAACTACTGGACAATTATTTTCAATTGcacagaaaggcaaaaggtgAGGTGGAATATTAATCAATTATATTCCATAATGAATAAATTATACCAgaaaaatattgttttttgtgttttacaTTACATCTTTATTTATTTGCCAAATAGATACCAAATTCCAGGGCTGTATGAACGGTCTACAGTTTTAATTAACTGCCAGTTCTGGAGCTTCATATCTGCTTGTCAATCAGGGCACCTTGAATGAGGTTGTACCATCTTTGGATAAGAGAAGTTTTTTACATTTCAGACACTAAAACCTACTGCTCCAAGTGTATTTAATTGTTTGTTCCTCAGAAAGTTGAATAGATGTTTTTGAATTGGTTTACATTTACTTGATACTTTATTTGCTTAGGATTAAATAGGCTGAGGAAAATTAAATGAGTTTATAATGGCTGTAATAGTGTAAAGAATTGTGTAAAAACCATCATGGATCATTTATTCCACTGGCTTTAGAGACAAGATCAGTATAAATACAATCTTATCCATTACAGCTAGATATCGGTTCTGTTCCTTTTTGTCCTTCATCGTTTTACTACCTTGGATATTAAAAACAGGTAATCACTTGGAGGTAGCCACACTATTACACATCAACATCCCCATGATCTGTCCAAAAGGCCCTTTTAGCTTAACTGCATAAACTGGACTCAATCAGCTGAAGACAACCACACTATAAAAACCATGATATTATTTTGCTAtctacagtggtgctagaaagtttgtgaaccctttagaattttctgtatatctgcatag

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|OTU\|OTU

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003323	Domain	OTU domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050704	Family	OTU domain-containing ubiquitin thioesterase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12419	OTU DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0035871	Biological Process	protein K11-linked deubiquitination	Interproscan
GO:0044313	Biological Process	protein K6-linked deubiquitination	Interproscan
GO:0050821	Biological Process	protein stabilization	Interproscan
GO:0071108	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:1990167	Biological Process	protein K27-linked deubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-