Gene detail

Detailed information of SKAU_T00169270 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00169270	ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1	CM056380.1	74611912	74624379	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00169270

cgacccataagtcatccatccatatctactgcatatctggcagcagagtgatgttttgaggctcgtttgatacctcagacccttgatgacttacagccatttagccaaccatgggttccatactattcccgtgtaatttacagcttaatctagtcccactcccattcccatagagatccattcaaatgcagaggttatagtatcgttttgTGCTGAATTGTCCctaattttttggaattggggtttgtaataagaTAAGGATGAAACataattgagaatgtcagttcaagACAATATATTTCAATAATCTATTGCATGAAGACcttgtttcattttaatttgcagataaaaatttcacagataaacatgatttataactcccatgccttcattatagtggatttGAATTTAAATAACATCTTTATCACAAATTAATGACAGTtccattgttaaatgtgatctagctgaggtaaatggcaaccattaCCCATAAATATTGTTTATATCGTTTGGAATTGAGATTGAGATAATATATATTGAGTGCTTTTGCAtaaattttatttctgttttatttctgttgcTTTAATGTCCCAATATTGTCCTGGGAATATTTGACCCAAGTTATCAGTTTTgcaggtgctaataagtaaatataacacaagggttaagcagtGCTAGATTTGGGAGTGGCTCCCTGGCACTGTTTCCTGTCAGTGTGTGGGAGTGGCTCTCTGGCTCTGTTTCATGGCAGTGTGTGGGAGTGGCTCCCTGGCTCTGTTTCGTGGCAGTGTGTGGGAGTGGCTTCCTGGCTCTGTTACATGGCAGTGTGTGGGAGTGGCTCTTTGGCTCTGTTACATGCAGTGTGTGGGAGTGGTTCCCTGGCTCTGTTTCATAGCAGTGTGTGGGAGTGGCTCCCTGGCTCTGTTTCATAACAGTGTGTGGGAGTGGCTCCCTGGCTCTGTTACATGCAGTGTGTGAGAGTGGCTCCCTGGCTCTGTTTCATAGCAGTGGTATGGGAGTGGCTCCCTGGCTCTGTTTCATAACAGTGTGTGGGAGTGGCTCCCTGGCTCCGTTTCCTGGCAGTGTGTGAGAGTGGCTCCCTGGCTCTGTTTCATGGCAGTGTGTGGGAGTGGCCCTCTGGCTCTGTTACATGGCAGTGTGTGGGAGTGGCTCCCTGGCTCTGTTTCATGGCAGTGTGTGGGAGTGGCCCTCTGGCTCTGTTACATGGCAGTGTGTGGGAGTGGCTCCCTAGCTCTGTTTCCTGGCAGTGTGTGGGAGTGGCTCCCTGGCTCTGTTTCCTGGCAGTGTGTGGGAGTGGCTCCCTGGCTCTGTTTCCTGGCAGTGTGTGGGAGTGGCTCCCTGGCTCTGTTTTATGGCAATGTGTGGGAGTGGCTCTCTGGCTCTGTTTCATGGCAGTGTGTGGAAGTGGCTCCCTAGCTCTGTTTCCTGGCAGTGTGTGGGAGTGGCTCTCTGGCTCTGTTTCCTGGTAGTGTGTGGGAGTGGCTCCCTGGCTCTGTTTCATGGCAGTGTGTGGGAGTGGCTCTCTGGCTCTGTTTCCTGGGTAGTGTGTGGGAGTGACTCTCTGGGTCTGTTTCATGGCGGTGTGTGGGAGTGGCTCCCTGGCTCTGTTTCATGGCAGTGTGTGGGAGTGGCTCTCTGGGTCTGTTTCATGGCAGTGTGACAGGGAAAGATTGAAGGTTTTTGGCTGCGCTGTGTGTGTTTTAGGGAAATGACCTCCCCCTCTGTCCGTGTACTGATTTGATTCTTTCACATTTGATACGGATGACTGCATGTGGAGTACAGCGATATATTTaattgtgtgtgcgtttgtgtacctgtgtatgtatgtgtgtgtatcggACAACTGTGAGGCGGTTATTTCTGCAAAGTAGATCACCGTGATGACATTGCATTTGTGGTGCgcgtctctttgtgtgtgtgtgtgtgtgtgtatgcgtacgtacgtgcgtgcgtgcctctgtgcgtgtgtgtgcgtgtgtgtgcaggggcGGTGATGTGATGGAGGAGCAAGACCTCCGTGAGATTGGGATCACTGACCCGGGACACAGAAAAAAGATCCTGCATGGGGCACGTGCCCTGCCCAAGgtgaAGGCCCTGGGCTATGATGGCAGTACCTCTCTCTCCTCATGGCTCGATGGCCTGGGTCTGCAGGAGTACCTGCACAACTTCCTGTCCAGTGGGTACCGCACCCTGGAGAGTGTGAAGAACCTGTGGGAGCTGGAGATTGTTAATCAGGTGCTGAAGATCGGGCTTCTGGGACACAGGAAGAGGATCATTGCCTCTCTAGCAGAGCGGCCCTATGAGGAAGCACCTGTCAAACCCCCCCGACTCTCCCAGATAAGATGTCAGGACCTGGCGTCCCAGCGTTCGTCCCCGATCAGTCACATGGACTCCTACATGGGACGCTCCATGGACCCGCTGCTTCCCCTGGGGGATTCTGGGAGGTGGAGCGAGACAGACCAAGAGCATGAGGCACCCTCTCGCCGCCCGCGCAGTGCGCGCCCCCGATCTCACGATAGACAGAGTGATCGCCAACGGGAGACCCGATTGACGCTCAGGCCGCCCAGCCACGCCGCGCCCTACGGCCCCGTGCCAAACTGGCAGCACCAGCCGGAGAAGCTCATCTTCGAGTCCTGCGGCTACGAAGCCAGCTACCTGGGATCGATGCTCATTAAGGATCTGAGGGGCACGGACTCCACCCAAGACGCCTGTGCCAAAATGAGGAGGTCGACAGAGCAGATGAGGAAGGTGCCCACCATCATCCTCTCCATAACGTATAGAGGGGTGAAGTTCATCGACGCAGGGGGTAAGAATGTGATCGCGGAGCATGAGATTCGTAACATCTCCTGCGCTGCCCAGGACCCCGACGACCTCTGCACTTTCGCCTACATCACCAAGGACCTGCAGAGCAATCGGCACTACTGCCACGTCTTCAGCACGGTGGACATGAGCCTGACCTATGAGATCATTCTCACTCTGGGACAGGCATTTGAGGTGGCCTATCAGCTGGCTCTCCAGGCCCAGAGGACCAGGCAACAAGTAATTTCATCAGGaccggggtcagaggtcatggagACCAGGTTAAGCCGACCAATGTCCAGCTCCCGCCGATTGTCAGCGctggtgGACCCCCTGGAGCTTGAAGCAGAGACACAGTCCCTGGGCAGTGCCACATGGCTGTCCGGACCAGAGAGACTCCACCAAGCGCCCCCATCAACACCACCAAGCGTCGCCCTCTCTGAAGaactgctctccctctctctcccctgttCGAGGGCTCCTAACCTCTCTGTGGTTCACAACTCTATGGGCCAGTGGATTAAACCTGCCTTTCTGCCAGAAACATCCTTCTGCACGGACTCCCTCCTGTCTTCTCTGTTCTTGACGAAGTCGCATGCGATTGGTACCGTGTGTAACTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00640	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR006020	Domain	PTB/PI domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR033635	Family	Ankyrin repeat and SAM domain-containing protein 1/Caskin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24174	ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0046875	Molecular Function	ephrin receptor binding	Interproscan
GO:0048013	Biological Process	ephrin receptor signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-