Gene detail

Detailed information of SKAU_T00158920 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00158920	PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERASE	CM056380.1	36248487	36255982	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00158920

ATGGATgttatggtagcattacaggctggggacatggATGGGTctgcaggggtggtggataggtgcctgcGGCGGAAATGTGGATCTCACCTGCACATCtatacagatgggtcaaaagatccggccagtgggagggcggggtttgcCATTCATATTCCTAAATTGCAGATCATCCAGGGTAGGCGGTTAACAGACAGGGTTTCAGTTTTCGCTACTGAGATAGTGGCGCTCTTAtgggcattagaatgggtgggggagctgggagtagacaaggcagtcctgtgttcggactctgccgctgcattagcggccctgcagggtggggagaggggggcgaggcCAGACCTGGTGGCGGAACTGCTAGTGACTTTGTATAGGGTGGttcagggggggtgtgaggtgggattcttgtgggtacaggctcatgtgggggtgggtgggaatgagaccgctgatgcagctgctaaggctgcactgaggagggaaagcatagatgttgtggtttccctgggggtgtctGAATGTAGAAGTATAATTAGAGAGGGGATTACCCAGATATGGCAGcgggaatgggaccaggaaaggaggggtagattttattataatatccagcCGTCGGTGAGAGGGAGCACGGGATGTCACTGgtctatgaggagggatgaggtcacTATGACCACGTtgaggatggggcattgtgggttggcagggggcttagtgagggtaggaaagcatatggatgggttgtgtgATATTCTCAACGGCACAAGGGGCAAAATAGCCATTGCTGTATATCTGGTGGTGATTAACGGCTTCTTGCTTCGCGTCTACAAAGGACCCATTTATAAGGTTGCTGTGCGGGCATGCTTTCTTGGCTTTATCTTTGGCTGTGGTTTGCTGGTCAGTTTAACCCAGACAACATGGACACACTTTGGCTGGTACATGTGCTCCTTGTCCTTGTTCCACTACTCTGAGTACTTAGTGACGGCCATGACtaatccccaaagcctgtcattggACTCTTTCCTCCTCAATCACAGCTTGGAGTACACTGTGGCTGCTGTGTCCTCATGGGTGGAGTTCACTGTGGAGATTCTTCTGGTCCCAGATCTGAAGCAGTGGCGCTGGCTAAGTCTGATGGGATTGCTGATGGTGGTGTGTGGGGAGTGCCTGCGGAAGTCGGCCATGTTGACCGCCGGCTCCAACTTCAACCACATTGTCCAAAACGAAAAGGCCCAGAGCCATGTGCTGGTGACCACGGGAGTGTACTCCTACTTCAGACACCCCTCCTACGTGGGCTGGTTCTACTGGAGTATCGGCACACAGGTGGTGCTCTGTAACCCTTTGTGCGTGCTGGGCTACACGTTGGCCAGCTGGCGCTTTTTCCGGGAGCGCATCGAGGAAGAAGAGATGTCGCTCATCCTCTTTTTTGGAGAAGAGTACTTGGTGTACAAACGCAAGGTGCCTACAGGCCTGCCCTTCATCCAGGGCATGTGCGTGGAGCCCTAAATTGGCTGTAGAGGAAGTGTGAAAGATATGATAATATATTTCCAAAAATATGCCAAAGCCTCCTCAGACTGGCTCTGAGATGGAGGGAGCTGGCAGTCTGGCGGCACTGTGGCTCTGCCCCTTGGCTGCACGGAGGTCCCAGTGCCTGTGCCAGGCAGCCAGAGACACTGATACACTAAGCACTGTGGTGCCCCGCCCCCTGCCTCCCATCAAGCTCGCCTCCCAGTAAAAGTGCAGAAAACTCCCTCTTCATGCTTGTTTACAATGTTTGTTGATCCCATATGTATCTCTTGATTTTCTTCATTATTTTCTTAGCATTCAGTTAGTTACTTATGATGGGTGAGTTCGAGAGCAAGAGGGCTTTCCGTCACTGAAGAGGAACCTGTACCTGTGAATGATGTTGGATTTGAtttcacaaaaaatgttttcatgcaGTTTCATGTATCAGATACCTCAGGCTGGAGGTTTGTTGAGAGTTGAGACATATTTTCCATGGTCACAACGTAAAAATTTGTTTGTAGCTACGCTGTGGGTAGTTGGAGGTAATTTGTGAAGGCGTACCAAGATTTTACCGTAATTGTTCTGGCAAATATTACCAGTGAATGAATCAGGAATAATTAGTGCAGATTATATGAAGTTGTCTCTCCCAGTGCTTGATCGAAAAGTGAAACCTGGCTATAGTTAGGAAAATCTATGTATGTGGACCAAGTGCAAGGAGCCATTGGCTCTTTCTGCATGTAGCAGGAGATATTTTTAAAATGCTTGTCAgttattttttgtgtttgtggtgttacgTTCTAAATGTATACAATGTTTTGTTTCATACCCGTACTGTGCAATTCTTTTTCCACTTATGGTAAATACTCTGATAGTCTTGAGGATGAGGAAAATATGTACAATGTACTTTACTACTTGTAAAATTACACCACTAATGTCTCAAACTCTGGAGCTGAGCTCTGGGTTTGAGCTCAGAATAGTGGGCGTCAGTCTCCTGGCTCTGTGAGCTCCAAACTCTTACACAATTAATGGCCATTATTCCAGATTCTTCTCTCTGATCTCTCTTTGTCATGAACATTTCAGTTTTAAACTCTTTTtggtattattttacatttttatttcaaatttttaaaaaatactccTGATGAGGAAAGTAAAATGAAGTTGGCTACACTGCTGCAAATTTATGTCAGAAAAATCATTGCTGGATGTGGTCATTCATTTTGATTTGAGAATTTGAATACTACACTATGTTTACAAGACTTTTTGCATACCAGATTTCATTTGAATCCTGCCTGTAAAGCACTGAAACAAACATGGATTGCCTTCATTGTCCTGAATCTATTTGTGAGAGCTTTCATGTCCATTTTTGATTGTAATTAGGCTATTCACTGCATTGGGGAAatgtttttaattgtattttaataaAGGTTATCATCTTGGGAAAGCAGTACAAAAAGGAACTTGCTTGAATGTTTTTGACAGGACTGAAAACTCAAGTAGGTTTCAGGAATTAAACTTTTCAACCTTTTTCCTGATTTGAagaatgcacacctgtatatGTTTGTTCATGTCTGAACAGTCACAACATCCCAAAAAGTCTGCATTCAATTTTGCTGTGGAGAGGAGACTAAATAAATGTTTTGGCATACTGCTTTCATATGTGAATAATAAAATGTATACCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF04140	ICMT	Isoprenylcysteine carboxyl methyltransferase (ICMT) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR007269	Family	Isoprenylcysteine carboxyl methyltransferase	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR025770	Family	Protein-S-isoprenylcysteine O-methyltransferase	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12714	PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0004671	Molecular Function	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006481	Biological Process	C-terminal protein methylation	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-