Gene detail

Detailed information of SKAU_T00158420 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00158420	EF-HAND DOMAIN-CONTAINING PROTEIN D	CM056380.1	35065575	35105729	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00158420

ATGGCATCTGATGAGCTGGCAAATAAACTGACACGGCGCCTGCAAATCGAGGATGGCACCGAGGACGCGGTGGCCGTGGACGCGGTGGCCGTGGACGAGGCTGAAGAAAACGGAGACATTGAGAAGGCGACCACTGCTAACGCTGACTCTGAACTGGGTGCCAAACTACTGCGCCGAGGGGAGCTCAACGAAGGGGTCGGACAACATCTGCAGCCCAGTGAGAGGGTATACAATCCGTACACGGAGTTTAAGGAATTCTCCCGGAAGCAAATCAAAGACATGGAAAAAATGTTCAAACAGTATGACGCAGGCAAGGACGGTTTCATCGACCTCATGGAGCTCAAATTGATGATGGAGAAGCTGGAGGCTCCGCAGACTCACCTGGGCCTGAAGAACATGATCAAAGAGGTGGACGAGGATCTGGACAACAAGCTGAGCTTCAGAGAGTTCCTGCTGATTTTCCGCAAGGCGGCGGCCGGCGAGCTGGCAGAGGACAGCGGCTTGCAGGTCCTGGCCAGCCGCTCTGAGATTGACGTGTCTACAGAGGGCGTGAAGGGAGCCAAGTCCTTCTTTGAGGCGAAAGTCCATGCCATTAACGATTCCAACCGCTTTGAGGCAGAGATTCGCCAAGAGCAggaggagaaaaagaaagagctCGAGGAGAAGAAGCAGCGAAAGGCGGCTTTTAAAGGCCTGCACCAGACAAAGCACCGGGAAAACACACTAGAGAGTCACCGCCGGCACAAGTTTAAGTCACCAGACACCACCATGAGCAGCGAGGCCGAGACGCAGCAGCCGCCACAGCCTGACGTAGAGGAGGAGAGCCCATCTAGCCCATCTAGCCCGGCGACAGCTACTACTGCGGGGGATAAGAAGGTCATCGCAACTAAGGTCCTGGGGACTGTGAAGTGGTTCAACGTGAGAAATGGCTACGGTTTCAtcaacaggaATGACACAAAAGAGGATGTCTTCGTACACCAGACGGCGATCAAGAAGAACAATCCCAGGAAGTACCTTCGCAGTGTGGGAGATGGAGAGACAGTGGAGTTCGATGTTGTAGAGGGGGAAAAGGGTGCAGAGGCAGCTAATGTAACAGGCCCGGGCGGGGTTCCCGTCCAGGGCAGTAAATATGCGGCGGACAGGAACCGCTACAGGAGATACCCGCGCCGCCGCGGCCCCCCGCGGGGCGGAGAATACCCGCAGGGTTACCAGAGCGACGGCGAAGGGGAGGTCCCGGAGAAGAGGGAAGGAGAAGGAGACAGCGCCCCCGAGGGAGACATGCAGACGCAGCAGCGCCGGGCGTCCTTTCCCTCCCGCCGCCGCTACCCCCCCCTACTTTGTCCGCCGGCGTTACGGCCTGTCCTGCCTTTCCCGCTGCAGCGCGTATCCCACGTTAAGCGCCGTCGGCGTCGCATTGTCGTTTCTCTGAGACGGCGGGGTGAAGCTGTGCGGGGAGTGGAAGGGGAAGAGAACCGGGGCGGACCGGACCAGGGCAACAAACCCATGAGGCAGAACTACTATCGCGGCTTCCGGCCAAGGTTCAGCGGCAGGTCTGCATTAGCGCCCTCGGGCCTGGTATCAAACTGCTCCATgccagctctgattggctggcaggCTCTGGGGGCGGAGCATAATCGGCTGCAGTGCCAGCCAGGCAGGGAGGGGGTGCCCCCCGTCCCCGACCCCCCCGCGAGGGCGGCATCAGCGAGGACGACAAGGAGAACCAGGCCGATGGAGCCAAGAACCAAGACCCTGAGCAGCGTCGGTACCCGCCGTCACTTCAACTACCGCCGCAGGCGCCCCCAGACTACCAAACCCCCCGAGGGCAAGGAAGGCAAGCCGGCCGACGCGCCCGCCGAGAAGCCCAGCGCTCCTGAGGCCGCGCATGGCGGGGCTGAGCGGCCGATTGGCCCTCGTCTCTCTCCGGGCTCCTCCTCTCACACGTTGGTCTCTTTGCGCAGCCTCTCCATGCGCTCCACATTGCGCTGCACGGCGATGCGGTTGGTGATCTCCGTGGCGCAGCTGGCTGGGAACCAGCCCCTCTCTCCGTCCCGCATCCTCTGCCCGATGATGACCACGTCGGCCTGCTGCAGGCCCAGCTCGTCTGGCTCTCGGGACATaacacagctgttcctcgtgtcggacctgcagcactatcaagcaccggagcggagGAGAGGCGAGGAGGTCGCTCCGCACACGCCCCTCAGCGGCCTCTCCCAGCACGCCGCGGAATGCGAGGTTGCCGTGCACGGCATGCCAGGGAGGAGGGGCCCACCTCTTCTTGCGGGTGAGGATGAGCACATCGTTGAACAGGAACAGGTAGTTGCTCCTGCTGCTGAAGGCCTTCCAGAAGATGCTGAGGTCGTCGGTGCAGACAGTCAGCTCCCCCCGTTTCCGTAG

Transcript

SKAU_T00158420

CTCTAACAAGGTAGGCCTAGGTCTACTTGACGTGGATTTATGAAGTAATTATCCACGATtttgaataatattttaaaatatgataTAATGCCCTCGGCGAAGATGTCTACATGGCAAATGATTTGgtgatttgaaatggaaaaaaaagtcaaAGTCGCTGTTGTTTAGATATAATTTAACATCCACTGCCCATTATTGCATATTTAAGAGGCGTGGCACATTGGGTGAACACGCTGAGGTAAGGGAGAGGCGCGTTCAACTGAAATCCTGACTGTGCCTTTGAGTTTGACAGCAGTTGGTCGCTCCTGTTTTAGCAAGAGCGAGGTTACGAAGTTTTCTTGTGGGCACCATTTTACACTTAAGAGTGCCAAACAATCAGTTAATTTGAAATCACATCGCGCTGTTTTTGTATGCTCGAATACGGTCAAACACATACAATTAGTTTTGTTTGCACTGTGTTGTAGTgattttagatatttgttttaaattgAAACTACGCCAACCATGGCATCTGATGAGCTGGCAAATAAACTGACACGGCGCCTGCAAATCGAGGATGGCACCGAGGACGCGGTGGCCGTGGACGCGGTGGCCGTGGACGAGGCTGAAGAAAACGGAGACATTGAGAAGGCGACCACTGCTAACGCTGACTCTGAACTGGGTGCCAAACTACTGCGCCGAGGGGAGCTCAACGAAGGGGTCGGACAACATCTGCAGCCCAGTGAGAGGGTATACAATCCGTACACGGAGTTTAAGGAATTCTCCCGGAAGCAAATCAAAGACATGGAAAAAATGTTCAAACAGTATGACGCAGGCAAGGACGGTTTCATCGACCTCATGGAGCTCAAATTGATGATGGAGAAGCTGGAGGCTCCGCAGACTCACCTGGGCCTGAAGAACATGATCAAAGAGGTGGACGAGGATCTGGACAACAAGCTGAGCTTCAGAGAGTTCCTGCTGATTTTCCGCAAGGCGGCGGCCGGCGAGCTGGCAGAGGACAGCGGCTTGCAGGTCCTGGCCAGCCGCTCTGAGATTGACGTGTCTACAGAGGGCGTGAAGGGAGCCAAGTCCTTCTTTGAGGCGAAAGTCCATGCCATTAACGATTCCAACCGCTTTGAGGCAGAGATTCGCCAAGAGCAggaggagaaaaagaaagagctCGAGGAGAAGAAGCAGCGAAAGGCGGCTTTTAAAGGCCTGCACCAGACAAAGCACCGGGAAAACACACTAGAGAGTCACCGCCGGCACAAGTTTAAGTCACCAGACACCACCATGAGCAGCGAGGCCGAGACGCAGCAGCCGCCACAGCCTGACGTAGAGGAGGAGAGCCCATCTAGCCCATCTAGCCCGGCGACAGCTACTACTGCGGGGGATAAGAAGGTCATCGCAACTAAGGTCCTGGGGACTGTGAAGTGGTTCAACGTGAGAAATGGCTACGGTTTCAtcaacaggaATGACACAAAAGAGGATGTCTTCGTACACCAGACGGCGATCAAGAAGAACAATCCCAGGAAGTACCTTCGCAGTGTGGGAGATGGAGAGACAGTGGAGTTCGATGTTGTAGAGGGGGAAAAGGGTGCAGAGGCAGCTAATGTAACAGGCCCGGGCGGGGTTCCCGTCCAGGGCAGTAAATATGCGGCGGACAGGAACCGCTACAGGAGATACCCGCGCCGCCGCGGCCCCCCGCGGGGCGGAGAATACCCGCAGGGTTACCAGAGCGACGGCGAAGGGGAGGTCCCGGAGAAGAGGGAAGGAGAAGGAGACAGCGCCCCCGAGGGAGACATGCAGACGCAGCAGCGCCGGGCGTCCTTTCCCTCCCGCCGCCGCTACCCCCCCCTACTTTGTCCGCCGGCGTTACGGCCTGTCCTGCCTTTCCCGCTGCAGCGCGTATCCCACGTTAAGCGCCGTCGGCGTCGCATTGTCGTTTCTCTGAGACGGCGGGGTGAAGCTGTGCGGGGAGTGGAAGGGGAAGAGAACCGGGGCGGACCGGACCAGGGCAACAAACCCATGAGGCAGAACTACTATCGCGGCTTCCGGCCAAGGTTCAGCGGCAGGTCTGCATTAGCGCCCTCGGGCCTGGTATCAAACTGCTCCATgccagctctgattggctggcaggCTCTGGGGGCGGAGCATAATCGGCTGCAGTGCCAGCCAGGCAGGGAGGGGGTGCCCCCCGTCCCCGACCCCCCCGCGAGGGCGGCATCAGCGAGGACGACAAGGAGAACCAGGCCGATGGAGCCAAGAACCAAGACCCTGAGCAGCGTCGGTACCCGCCGTCACTTCAACTACCGCCGCAGGCGCCCCCAGACTACCAAACCCCCCGAGGGCAAGGAAGGCAAGCCGGCCGACGCGCCCGCCGAGAAGCCCAGCGCTCCTGAGGCCGCGCATGGCGGGGCTGAGCGGCCGATTGGCCCTCGTCTCTCTCCGGGCTCCTCCTCTCACACGTTGGTCTCTTTGCGCAGCCTCTCCATGCGCTCCACATTGCGCTGCACGGCGATGCGGTTGGTGATCTCCGTGGCGCAGCTGGCTGGGAACCAGCCCCTCTCTCCGTCCCGCATCCTCTGCCCGATGATGACCACGTCGGCCTGCTGCAGGCCCAGCTCGTCTGGCTCTCGGGACATaacacagctgttcctcgtgtcggacctgcagcactatcaagcaccggagcggagGAGAGGCGAGGAGGTCGCTCCGCACACGCCCCTCAGCGGCCTCTCCCAGCACGCCGCGGAATGCGAGGTTGCCGTGCACGGCATGCCAGGGAGGAGGGGCCCACCTCTTCTTGCGGGTGAGGATGAGCACATCGTTGAACAGGAACAGGTAGTTGCTCCTGCTGCTGAAGGCCTTCCAGAAGATGCTGAGGTCGTCGGTGCAGACAGTCAGCTCCCCCCGTTTCCGTAG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan
IPR040365	Family	EF-hand domain-containing protein D1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13025	EF-HAND DOMAIN-CONTAINING PROTEIN D	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-