Gene detail

Detailed information of SKAU_T00154300 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00154300	GATA-TYPE DOMAIN-CONTAINING PROTEIN	CM056380.1	14934391	14988087	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00154300

ATGAAGATTATCTTGCTCCTCTCCCTCGGTGTAACTCTGCTCTCTCTTGGACAGGGCAACACCCTGGACTCCTGTCAGGGTCGCTGTGGATACGGGACGGATCCGGGATACACCTGTCAGTGTAACTCTGCCTGCGAGCGCTTCGGCGACTGTTGCTCTGACTACCAGACCCTCTGCCAAGGTTCCACTTCCTGTAAAGGAAGATGTGGGGAAAACTATAACTCTCAGAACAAGTGCCACTGCAACACCAAATGCAGCCAGCACAAAAACTGCTGCAAGGACTACAGCGACCACTGTGGGGGGTCCTCTGGAGGAGAGCCGATCTCAGACTCGGAGCTGAAGGCCTTGTCTGAGCTGCTCTACAGCCTGGACTCCAACAAGGCCTCTCCCTCGGAGCTCGTCATCAATCGTCAGGCCCGAGTGTCCGACTCTCAGACTAGCTCACAGAAGGACCTCTCCCCGAAACCCTTGTTCACCTACCTGGACGAGTCTTCCCTCTTCTCCAAACCCACCTTTGCTGCGTTCCTGGCCCTGCTGGACAACTACCGGAGGTACACGGGCCAGACGGAGAacttcagctcagctcagctggcAGAGCAGGACACCTTCCTCCGAGAGGCTATGTCCAACACCGCAATCGGCAGAGAGCTCTACGCCTTCTTCCTCCGCAAAGGCATCTACAGCTCACAGGCAGAGTTCATATATGACCTGAAGATGATGTGGTTCGGCTTGTACTCCCGCAGCAATGTGAAGGACTCCAGTGGTTTTGAGCACATCTTCGCTGgAGAGGTAAAGAAAGGTAAAGTCCACAGCTTCGACGGGCCTtggtcTGGCTTTCCTGATGTTCTGGGCATGCAGTTTAATTGGGACGGCTACTTCAAGCAAGTGGGCTCTGCCATCATTGGCAGCAGCCCAGAGTTTGACTTTGCCCTGTTCACCCTCTGTTACGTCGCCCGTCCTGGAAGCCAGTGTTACCTGAGCTTGGGAGGGAAGACTCTGGTGATCCAGACGTACACCTGGGATAATTCATTCTACGGGGATGGGAAGAAGTTCATTGCCTCCGatccgagtatggccggtgccctgagggagcagcaattggcggcaaCTCCCCctcccttggggaccaccgactccaccgcccttggggaccaccgactccaccgcccttggggaccaccgactcccccgcccttggggaccaccgactcccccgcccttggggaccaccgacattgctcaggtGTGcggcgctcggggaatcgaaccagcaacctctaccctcgtgaagtgCCATCCAACCTCCTGCACCACGGAgtgcggcgctcggggaatcgaaccagcaccctctaccctcgaaccaggctaggcagggacgggcactcaggccggggggtcaggaacgaggacggcactccaGCCGTGGGGTCGGGAAAAGGCttgagaagagtctggctgcagacatccaccgtgaagccccacgtccaccgccaggcccctcggggcctgagcatggacctggaactgccccgtgtcctgggaatggaggagagcgaggtggccaacgccctcattgcatacacccggctcgctgacgtggttggggaagcagagcacaacgagattgtgggaccatttGTCTGTCTCTCCCACCGTGTTCAGTCAGTCCATACAAGCTGTCCGCTTCTAGCTGCAGAGAAAGCCCTTCTTCTGAAACTGCGCAAGACCACTGGCTACACCTTCATCAACTGCAAGAAAGCGCTGGAAAAGTTTGATAATGACATCAAGCAGGCTGAGAGCTGGTTACATGAGCAAGCCCAGAAAGAGGGGTGGAGCAAAGCGACCCGATTGGAGGGTCGGCGGGCTAAAGAGGGCCTGATTGGTCAGCTGGTGGGCGACAGAGCAGCAGTAATGGTGGAGGTAAACTGCGAGACAGATTTCGTGGCCCGTAACGAGAGGTTCCAGGAGCTGGTGAGAGATGTGGCATTCGCCACCATGGCTCACCACCGCAGAAAGGCCGAGGGCCAATCAGGTTATGTGAAGAACCTCCTGTCTGCAGAAGACCTCGCCCCGCTGAGCGTGTCTGAAGGAGCCCGTCTCGCCGACCTGCTGGCGCTGACAATAGGTGAGTGTGTGGCCAGGCTGCCCGGACTGCCCGTATGTTTTTCTGACACGTCATTTTCTCCCCACGGGCGGTGGCGGGTGGCGGTGCCGGCCGACTGGCACATCGGCTCCTACGTCCACGGGCCGGCGGCGGGAGCGACGGGCATGGTCATGGGGCGCTACGGCGCCCTGGTGGTGTTCCGGGGGGGGCGGGGCGACACGGAGGTCCTGGGGCGGAGACTGGGCCAGCACGTGGTGGGGGAGGCGCCCGTCTCCCTGGGCAACGCCGACGACCTGCCGTGCGGGGAATCGGAAACGCGGCTGCTGCCGCAGAGCTTCCTTCCGGATCCGACCCGGACAGTGGCCCAGTACCTGGCGGAGGAGGGCGCCCGCGTCCTGGACTTTGTCCGCTTCCAGTGCGGGGAAGGGAACGCCGGCGATCTGCGGAGCAAGCGCATCAGCTCCAACAGCATGCGGAGCAAGTCCAGCGGTTACGGCGGCAGCTTCGGCGCCCTTTCCCCGGGCGGCTCCGCGGGGTTCAGCAGCGGCTCCGCCTACTCGGCCCTGCAGTCCATGAGCTCCATGTCCATCAACCGCAGCCTGCTGGCCCCCCTCAACCTAGAGATAGACCCCAGCATCCAAGTCATCCGCACCCAGGAGAAGGATCAGATCAAGACCCTCAACAACCGCTTCGCCTCCTTCATCGACAAGgTACGCTTCCTTGAGCAGCAGAACAAAATGCTGGAGACCAAGTGGGAGCTCCTCCACAGCCAAACCTCCAACCGCTCCAACATCGAGCCGCTGTTCGAGGCCTACATGTCTGGCCTACGTCGCCAGATGGACATCGTCAACAACGACAAAACCAAGCTGGAGGGAGAGCTGAGGAACACTCAGGGCCTGGTGGAGGACTTCAAGCAGAAGTACGAAGAGGAGATCAACAAGAGGAACAGCCTGGAAAATGAGTTTGTCGTGCTAAAGAAGGATGTTGACTCGGCTTACATGATGAGGGCCGATCTGGAGGATAAGGTGGGGTCACTGACCGACGAGCACACCTTCCTGAGGACCGTATACGAAGAGGAACTGCGTGAGATGCAGGCCAGCATCAAGGACACCTGTGTCATTGTCCAGATGGACAACTCACGCAACCTGAACATGGACCAGATAGTGAACGATGTGAAGGCTCAGTATGAGGAGATCGCTGGCAAGAGCCGGGAGGAAGCTGGGGCCTGGTACAAgagcaagTTCGACCAGATGTCCATCCAGGCCAGCCAGTATGTGGATGAGGTGCGCACCACGAAGACCGAGATCGCTGAACTCAACCGCATGATCGCCCGTCTGCAGAGTGAGATCGATGGTCTCAAGAGCCAGCGCATGAGTCTGGAGAGCCAGGTCACTGAGGCGGACGAGCGTGGCGAGTTGGCGGTAAAGGACGGGAAGGGCCGGGTGAGGGAGCTGGAGGACGCCCTCCAGAGGGCAAAACAGGACATGGCCCGCCAGGTTAGGGAGTACCAGGAGCTGATGAACGTCAAGCTGGCCCTGGACATCGAGATCGCCACCTACAGGAAGCTGCTGGAGGGAGAGGAAGACCGAATTGGACAGCAAGTGGTTTTCAATGTCCAGCCAGTGACAGGCTATGGATCCAAAGCTGTCAATGGCCATCAGCAGGTCAGCCCGGCTTCAAAGCTCCTGATCAAGACCACAGAGACCCGCAATAATACCAGATTCAGCTCCTGCTAA

Transcript

SKAU_T00154300

GCCAGGTCAGCCAAATATAAAACGGAAAAGCCTTGCTGTGAGCTGTTCTGTTTGGCACAGCTGGTCCACGATGAAGATTATCTTGCTCCTCTCCCTCGGTGTAACTCTGCTCTCTCTTGGACAGGGCAACACCCTGGACTCCTGTCAGGGTCGCTGTGGATACGGGACGGATCCGGGATACACCTGTCAGTGTAACTCTGCCTGCGAGCGCTTCGGCGACTGTTGCTCTGACTACCAGACCCTCTGCCAAGGTTCCACTTCCTGTAAAGGAAGATGTGGGGAAAACTATAACTCTCAGAACAAGTGCCACTGCAACACCAAATGCAGCCAGCACAAAAACTGCTGCAAGGACTACAGCGACCACTGTGGGGGGTCCTCTGGAGGAGAGCCGATCTCAGACTCGGAGCTGAAGGCCTTGTCTGAGCTGCTCTACAGCCTGGACTCCAACAAGGCCTCTCCCTCGGAGCTCGTCATCAATCGTCAGGCCCGAGTGTCCGACTCTCAGACTAGCTCACAGAAGGACCTCTCCCCGAAACCCTTGTTCACCTACCTGGACGAGTCTTCCCTCTTCTCCAAACCCACCTTTGCTGCGTTCCTGGCCCTGCTGGACAACTACCGGAGGTACACGGGCCAGACGGAGAacttcagctcagctcagctggcAGAGCAGGACACCTTCCTCCGAGAGGCTATGTCCAACACCGCAATCGGCAGAGAGCTCTACGCCTTCTTCCTCCGCAAAGGCATCTACAGCTCACAGGCAGAGTTCATATATGACCTGAAGATGATGTGGTTCGGCTTGTACTCCCGCAGCAATGTGAAGGACTCCAGTGGTTTTGAGCACATCTTCGCTGgAGAGGTAAAGAAAGGTAAAGTCCACAGCTTCGACGGGCCTtggtcTGGCTTTCCTGATGTTCTGGGCATGCAGTTTAATTGGGACGGCTACTTCAAGCAAGTGGGCTCTGCCATCATTGGCAGCAGCCCAGAGTTTGACTTTGCCCTGTTCACCCTCTGTTACGTCGCCCGTCCTGGAAGCCAGTGTTACCTGAGCTTGGGAGGGAAGACTCTGGTGATCCAGACGTACACCTGGGATAATTCATTCTACGGGGATGGGAAGAAGTTCATTGCCTCCGatccgagtatggccggtgccctgagggagcagcaattggcggcaaCTCCCCctcccttggggaccaccgactccaccgcccttggggaccaccgactccaccgcccttggggaccaccgactcccccgcccttggggaccaccgactcccccgcccttggggaccaccgacattgctcaggtGTGcggcgctcggggaatcgaaccagcaacctctaccctcgtgaagtgCCATCCAACCTCCTGCACCACGGAgtgcggcgctcggggaatcgaaccagcaccctctaccctcgaaccaggctaggcagggacgggcactcaggccggggggtcaggaacgaggacggcactccaGCCGTGGGGTCGGGAAAAGGCttgagaagagtctggctgcagacatccaccgtgaagccccacgtccaccgccaggcccctcggggcctgagcatggacctggaactgccccgtgtcctgggaatggaggagagcgaggtggccaacgccctcattgcatacacccggctcgctgacgtggttggggaagcagagcacaacgagattgtgggaccatttGTCTGTCTCTCCCACCGTGTTCAGTCAGTCCATACAAGCTGTCCGCTTCTAGCTGCAGAGAAAGCCCTTCTTCTGAAACTGCGCAAGACCACTGGCTACACCTTCATCAACTGCAAGAAAGCGCTGGAAAAGTTTGATAATGACATCAAGCAGGCTGAGAGCTGGTTACATGAGCAAGCCCAGAAAGAGGGGTGGAGCAAAGCGACCCGATTGGAGGGTCGGCGGGCTAAAGAGGGCCTGATTGGTCAGCTGGTGGGCGACAGAGCAGCAGTAATGGTGGAGGTAAACTGCGAGACAGATTTCGTGGCCCGTAACGAGAGGTTCCAGGAGCTGGTGAGAGATGTGGCATTCGCCACCATGGCTCACCACCGCAGAAAGGCCGAGGGCCAATCAGGTTATGTGAAGAACCTCCTGTCTGCAGAAGACCTCGCCCCGCTGAGCGTGTCTGAAGGAGCCCGTCTCGCCGACCTGCTGGCGCTGACAATAGGTGAGTGTGTGGCCAGGCTGCCCGGACTGCCCGTATGTTTTTCTGACACGTCATTTTCTCCCCACGGGCGGTGGCGGGTGGCGGTGCCGGCCGACTGGCACATCGGCTCCTACGTCCACGGGCCGGCGGCGGGAGCGACGGGCATGGTCATGGGGCGCTACGGCGCCCTGGTGGTGTTCCGGGGGGGGCGGGGCGACACGGAGGTCCTGGGGCGGAGACTGGGCCAGCACGTGGTGGGGGAGGCGCCCGTCTCCCTGGGCAACGCCGACGACCTGCCGTGCGGGGAATCGGAAACGCGGCTGCTGCCGCAGAGCTTCCTTCCGGATCCGACCCGGACAGTGGCCCAGTACCTGGCGGAGGAGGGCGCCCGCGTCCTGGACTTTGTCCGCTTCCAGTGCGGGGAAGGGAACGCCGGCGATCTGCGGAGCAAGCGCATCAGCTCCAACAGCATGCGGAGCAAGTCCAGCGGTTACGGCGGCAGCTTCGGCGCCCTTTCCCCGGGCGGCTCCGCGGGGTTCAGCAGCGGCTCCGCCTACTCGGCCCTGCAGTCCATGAGCTCCATGTCCATCAACCGCAGCCTGCTGGCCCCCCTCAACCTAGAGATAGACCCCAGCATCCAAGTCATCCGCACCCAGGAGAAGGATCAGATCAAGACCCTCAACAACCGCTTCGCCTCCTTCATCGACAAGgTACGCTTCCTTGAGCAGCAGAACAAAATGCTGGAGACCAAGTGGGAGCTCCTCCACAGCCAAACCTCCAACCGCTCCAACATCGAGCCGCTGTTCGAGGCCTACATGTCTGGCCTACGTCGCCAGATGGACATCGTCAACAACGACAAAACCAAGCTGGAGGGAGAGCTGAGGAACACTCAGGGCCTGGTGGAGGACTTCAAGCAGAAGTACGAAGAGGAGATCAACAAGAGGAACAGCCTGGAAAATGAGTTTGTCGTGCTAAAGAAGGATGTTGACTCGGCTTACATGATGAGGGCCGATCTGGAGGATAAGGTGGGGTCACTGACCGACGAGCACACCTTCCTGAGGACCGTATACGAAGAGGAACTGCGTGAGATGCAGGCCAGCATCAAGGACACCTGTGTCATTGTCCAGATGGACAACTCACGCAACCTGAACATGGACCAGATAGTGAACGATGTGAAGGCTCAGTATGAGGAGATCGCTGGCAAGAGCCGGGAGGAAGCTGGGGCCTGGTACAAgagcaagTTCGACCAGATGTCCATCCAGGCCAGCCAGTATGTGGATGAGGTGCGCACCACGAAGACCGAGATCGCTGAACTCAACCGCATGATCGCCCGTCTGCAGAGTGAGATCGATGGTCTCAAGAGCCAGCGCATGAGTCTGGAGAGCCAGGTCACTGAGGCGGACGAGCGTGGCGAGTTGGCGGTAAAGGACGGGAAGGGCCGGGTGAGGGAGCTGGAGGACGCCCTCCAGAGGGCAAAACAGGACATGGCCCGCCAGGTTAGGGAGTACCAGGAGCTGATGAACGTCAAGCTGGCCCTGGACATCGAGATCGCCACCTACAGGAAGCTGCTGGAGGGAGAGGAAGACCGAATTGGACAGCAAGTGGTTTTCAATGTCCAGCCAGTGACAGGCTATGGATCCAAAGCTGTCAATGGCCATCAGCAGGTCAGCCCGGCTTCAAAGCTCCTGATCAAGACCACAGAGACCCGCAATAATACCAGATTCAGCTCCTGCTAAAGATCTGATCAGCCTCTCTATTCAAACATGGCTGACTTCCCAGCGATTAGCCTGTAGCCTTAAAGTAGCCACTGTCTGgatctttcttttttctctcgtTGCTTTGCTTTGTTAATCAAACACCAATCCTTTTCTGTGCTAGTTTGATTCATGGGGTGTATCTGGTCCTGTTGGAGATAGTTTACAGTCTCTACAAGTAACAGGCTAAATCTTTGAGTAAGAAAAATAAATCTGTTCAAATCTCCAGTTACAGTAACATTTGCTCTGTGTTCACATTGTAACTCATTATAATATtaaagcaccacctttttttgaacacaaacctgataaataaaaatggttactgttcttgaccCCTTTGacgacaggcataatcctggtctcttttggaaggtaacccttgggagttttccaaagagtcagaattactctaagtattactgaaacagagtaacagaagctcaaacacagtggaagtgtacgttttttttttttttctcgtctaaaatatgcatatttttttgccaggataaggataccgactttaccgttatACAAAGTAAGGaactgttgtcgctataacattggaatcgtaaaatagtttatagagataaaatcgtgagttttaacactttaaaaacggtatattgtgttacCTGATTATTTACAAATTTCACCGTGAAAAAAAAaccgcaatgaatgcaaataaacggaACCACTTCCGGCCCGAACACGAGCCGGTgatagttaaggggttaaaagaCTAAAGAGCTAAATCTTTACACCATTGATAATGACTGTCGCTTTTCTTCCCTTTCATTAAAACCATACCTGCTTTGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00038	Filament	Intermediate filament protein	Coiled-coil	Interproscan
PF00889	EF_TS	Elongation factor TS	Family	Interproscan
PF01033	Somatomedin_B	Somatomedin B domain	Family	Interproscan
PF09412	XendoU	Endoribonuclease XendoU	Family	Interproscan
PF16208	Keratin_2_head	Keratin type II head	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001212	Domain	Somatomedin B domain	Interproscan
IPR001816	Family	Translation elongation factor EFTs/EF1B	Interproscan
IPR003054	Family	Keratin, type II	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR014039	Domain	Translation elongation factor EFTs/EF1B, dimerisation	Interproscan
IPR018039	Conserved_site	Intermediate filament protein, conserved site	Interproscan
IPR018101	Conserved_site	Translation elongation factor Ts, conserved site	Interproscan
IPR018998	Domain	EndoU ribonuclease, C-terminal	Interproscan
IPR032444	Domain	Keratin type II head	Interproscan
IPR036024	Homologous_superfamily	Somatomedin B-like domain superfamily	Interproscan
IPR036402	Homologous_superfamily	Elongation factor Ts, dimerisation domain superfamily	Interproscan
IPR037227	Homologous_superfamily	Endoribonuclease EndoU-like	Interproscan
IPR039008	Domain	Intermediate filament, rod domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45616	GATA-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan
GO:0030280	Molecular Function	structural constituent of skin epidermis	Interproscan
GO:0031424	Biological Process	keratinization	Interproscan
GO:0045095	Cellular Component	keratin filament	Interproscan
GO:0045109	Biological Process	intermediate filament organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-