Gene detail

Detailed information of SKAU_T00137930 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00137930	PROTEIN PHOSPHATASE 2C	CM056379.1	77790867	77863685	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00137930

Transcript

SKAU_T00137930

atggagctgcgagaggcccaggaagtagacagcacgctgggcaaggtgaggggctggctggaggcggggcagcgtcccgagcggtcggtggtgtcggcagagagcccagagctcaagagctactacagcctgtacagcagcttggtgcagtgcgacggtctcctctacagacggtggcaggccccaggccggggcagcgacatcctgcagctgttggtgccacgggcgctccgccctgatgtcctcaggttggtccacggctcggtgggggcgggccacttcggcaacaacaaaaccctgcaccggctgagggggaagtttcactggccggggtgtcgtcacgacgtcgagctccacgtccattgctgcgactcctgcacggcacagaaagggcctagtcaacactcccgagcacccctgcaacaacacctggtgggggcccccatggaacgggtgggggtggacgtcctcgggcccttccccatcaccgactccggcaatcgctaCATTCTTGTAGCGTtggattacttcaccaagtggccggaggcattcgctatcccagaccagagtgcggcgacgacggcggaaaggctcgtggaggagatgttcacccgtttcggggcccctgccgagctccacagttcagcgggagagcaggtctgggtttattgccctgagaggaagaagggcctgtcgcccaagctgcgagcgagctggcgggggcctggggaagttgtggaacggctctcggaagtggtttatcgcatcaggatgccaggccgggggcgcctggtggtgctacatcaggaccggctcgcgccctacaggcccctggcaactcctgatgcagctgagccggtggtgagcagcgacactgcattacccagtgagcctgagcccagcgacactccgctgagtgctaccgggagacctaaacgacaccggcggcccccaggccacttacgggactttgatCCCAACACAGTTAAATCTGTAGCTGACGGAGGCAGCAAAAATATGAGCTACGGATATGCAGCCATGCAAGGCTGGCGCGTTTCCATGGAGGATGCTCACAACTGCATTCAAGAACTGGATGATGAAACGGCCATGTTTGCTGTTTATGATGGACATGGAGGTGAGGAAGTTGCATTATACTGTTCCAAATATCTGCCTGAAATCATAAAACAACAGACGGCATACAAAGATGGCAAACTGCAAAAGGCCTTGGAAGATGCATTCTTGGCAATAGACAGCCGGATGACAGTAGAGGAAGTTATCAAGGAGCTCTCCCAAATTGCAGGAAGACCACAGGAGGAAGAGGTGAAGGACAAGGTGGCTGCTGAAGATGAtgTGGACAATGAGGAAGCTGCACTCTTGCACGAAGAGGCTACCATGACCATTGAGGACCTGTTGATCCGCTATGGACAGAACTTGAACCTTGTCAAAAATGGCAAAAAGCCCTGCACCGTAGCCAAGAAGCAGTCAGGGGAGTCAGAGGAAAGAGACTCCCGCTCTGACAAAGACATTAATGGAGAGACGCAGTGTGGGAGCTCAAGTCTGGAGAACAGCAGTGGGAAGTCAAAGCCTGACAGTGTAGGCGGCTTGAAAGCCCGGGCATGCAGGAGCTCGGGGGACAGTGGGTCGGGGTCCAGCACAGCAGAGAAGGCCAAGGGCGAGGTGGAGGCTGGGGGAACGGGTGACGCCGGCCCTTcttgctcctcctctgctgctcaGCCCCAGTGGGGCAGCAAGTCCAAATTCTTTGAGGACAGTGACGAATCggaggaaggggaggaggaggaagacagTGAAGAGGAGGACTGCAGTGAGGAAGAAGAGGGTGATTACAGcagtggagaagaggaggaggaggaggacgaggacgaggatgAAGATGAGGAAGACAGTGATGCAGAGGATGAGATGTGCCTTCCTGGAATGGATGGAAAAGAGGAGCCTGGTTCCGACAGTGGGACCACAGCGGTGGTGGCATTGATTCGAGGCAAGCAGCTGATTGTGGCCAATGCAGGGGACTCGCGCTGTGTGGTCTCTGAGCGAGGCAAAGCCGTGGAGATGTCCTACGACCACAAGCCAGAAGATGAGCTGGAGTTGGCCCGGATAAAGCATGCCGGTGGGAAGGTGACAATGGATGGCCGTGTCAATGGAGGACTCAACCTCTCCAGAGCAATCGGTGACCACTTTTATAAACGGAACAAGGCCCTCCCTCCTGAAGAGCAAATGATCTCTGCTCTGCCAGATGTCAAAGTACTGGCTCTTAATGAAGATCACGACTTTATGGTCATTGCCTGTGATGGCATCTGGAATGTCATGAGCAGCCAGGAAGTGGTGGACTTTGTCAGCAAGAGGATAAAGGCGGATGAGAATGGTGAAGTCAGAGCACTATCCTCCATCGTTGAGGAGCTTCTCGACCACTGCCTGGCGCCAGACACATCGGGGGATGGAACAGGCTGCGACAACATGACCTGCATCATCATCACCTTCTCCCCACACCCCTGCAGCACCCAAGCAGAGGGCTGTAAGAAGCGCAAGCCTGACCAGAGCTGTCTGGAGAAGAACGGAAGCGACAGCAAGAAGTCCAAATCTGAATAGAAACTGCCAGTCAAACAGGCCAATTCTTTTTAGGAAACCAATCAAAACTGGTAGTTTTCCCCCCCACTGGGACATTACTCATGAAGACCATGGGATTTATATTAGTACGTTTTAATTTGAGAATGTAAATTGCCCTGAATGCTTCATTGGTGTCTTTCCCAACTGCTCTGATGTAGTGCTGTTGATTGGACAAAGGTAAAATTTGAAGTAGTCCAAAAGAAAATGATTACTTCTCTATAATTTCATAACGTCAGTGATTATTCTCGAGTGTAGTTAACTGTATCtccaaatctcttgcaaaattgTAATAACTCAGGATGATGTTAGTTCAACTTAGATTTTTGATACCCATAAGGCCCATGTTCAAAATTACAGTGGAGGACCAAAGCCCCTAATTTTGCATTGAATAAATGGTTCCCGTCGACAAATTCCATACATACGTACGAGAGGAATTGGTCTCCACAATGTTGCTGTTACCGAGGCAAAACTACAGCAGGTCCAAGATGCTTTACCTGTATATAAGTAGGCTTATTTTTACTATATGTCCAGGAATTTTGGATGGGATTTTGGTCTGGACAATACAACTTGTCAGGAAGATGCAACAGAGCCAAGACACTTTACCAGTATGTAATTAGGCTACTTTTATACATCCAGGAATTTATGAAGGGATTTGGGTTTGGAGAATAGCAAGGACTTCCTGTCAAGCATGGATATATAATGCACATACAATTATAGGTGATTCTTTAATGTACCACACTTTTTCTGTCATTCATCCCCAtgttatgtgtatatatatatgtatattttacatgcctattcattttaatcagtccccccccccccccccccccaccatgtaATTGTGGAGTAATGCAAAAATGTGTCTTATTTTAACCCCATTATGTAAGTGCATTCATACTTGCAAATGGAAAAAGATCATTTCTTTAGTTGAATGTGTATACATTTGAAGGCAGTGTCATGTTTTTGTCTTCATACCTATCAGGGAGTTCAAAACAAGTCTTCCCTTGTCAGGTTAGTTTAGTGTCCCAGAATGCTTTtgataaaaaattctaaaaataaacttttagatTGAATGACCTGCTGGATAGCAACTGCAGGACCTTCAGCATTGTGGGAATCGACAATTAGCACTGTTCTTGATCAGCTTGCATGTATCAATGGGTTACATTTACTCCATAAGTTGCCTTGGAGAGGAGCTCTTGGAGTTACAGTTGGGCAGAACATCATAAATCCTGCTGCAATTGGCTGTGTATGGAAACCACCTTGATTCTGTCAATGTGGAAGAAAAAATTGTTTAGCCAATATAACTGCACTGAGCCAAACGACCTAATGGAAAGTAACTCATGTTGGTTTATCTCTTCAGTGGATGTCTGCTTCCTTTGCTTAGTCCAATAAGGTTTATATGAGGTATTTTTGAATACATATTTTGGTACTTTTTTGAAGCATCTTTATATTGTTAGTTGTCTTGAGCCCAAAACATTACTTCAAAATAAGATTCCATTTTTTCCTGCGTCAAACATGTCACactttttaattttgtttgtagCATTGTATTGTACAGTTCCCCACTTGCTATGGATTTTGCCAACTCTGATGTTGGACAGGACTGTACACGACGTCAAATAAAGATGTAGTTTTTAAACTTACTGCAGTCCCACATATCGTCAGTTATTGTGCAGatgctcagtggccactttattaggtatagCTGCTTGTTAATGCAAATAGCCTGATCAGGGGTGCCGCCGGGGATTTTGGGTCCCACCATCCCATCCCACCCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00481	PP2C	Protein phosphatase 2C	Family	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000222	Binding_site	PPM-type phosphatase, divalent cation binding	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001932	Domain	PPM-type phosphatase-like domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR015655	Family	Protein phosphatase 2C	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036457	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13832	PROTEIN PHOSPHATASE 2C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004722	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0043169	Molecular Function	cation binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-