Gene detail

Detailed information of SKAU_T00133970 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00133970	GH11602P	CM056379.1	57773878	57831096	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00133970

ATGGCGGGTCGGGGAGGACCGGCAAGATCCAATGGTCCGGCGGCAGGAAACAAGATCTGCCAATTTAAGCTGGTGCTACTGGGGGAGTCGGCGGTGGGCAAGTCCAGTCTGGTGCTGCGCTTTGTAAAAGGCCAGTTCCATGAGTACCAAGAGAGCACCATTGGAGCTGCCTTCCTCACACAGACGGTCTGTTTGGACGATACAACAGTAAAGTTTGAAATCTGGGACACAGCTGGCCAGGAGAGATATCACAGCCTGGCGCCGATGTATTACAGAGGGGCCCAGGCGGCCATCGTGGTCTATGACATCACTAACACAGATACTTTTGCACGTGCAAAGAACTGGGTGAAGGAACTCCAGCGACAAGCCAGCCCCAACATTGTGATTGCCCTGGCAGGGAACAAGGCAGACCTCGCCAACAAGAGAGCCGTTGACTTCCAGGAAGCACAAGCCTACGCAGACGACAACAGCCTGCTTTTCATGGAGACTTCGGCCAAGACTGCAATGAACCCAAGAAGCTGCCGAAGAATGAGCCGCAGAGTGGAACAGGCGCAGGGGGCCGGGCCAGGGCAGGAGTGGATCTCCAGGATGCCGCCCCCCAGAGCCGAAGCGGCCAGTGCTGCAGCGGCAGCAACTAACAATGCACTGAGCCAGCCAACAACAACCCAACCGACGACCAACGGCCGCGAGACGAAACCAACCCCGAAGGAAAAGAAAACGATGAAACGAGATCCATTCTTGCCCGCCTCCTTACAACCCCGGCCTCAACAGACTCAGTCCAGCGGGACAACTGGGTCGAATGCGATGCCTGGATCCGCGAACTGTGATCCGGCCAGGCCGGGTCTAAGCCAACAACAACGGGCCAGTCAGAAGAAAGCGCAAGTTCGAGCGTTTCCACGGGCGAAAAAGCTTGAGAAACTCGGAGTCTTCTCAGCTtgtaagGCCAATGACTCATGCAAGTGCAATGGCTGGAAGAACCCTCATCCACCCAACGCCACCCGCATGGACCTCCAACAGCAAGCAGCAAGCCTGAGTGAACCGTGCCGCAGCTGTGGCCATGCTCTGGCGGACCATGTCTCCCACTTGGAGAATGTGTCGGAGGAGGAGATCAACCGACTGCTGGGCATGGTAGTAGATGTGGAGAACCTTTTCATGTCCGTCCATAAGGAGGAGGACACTGACACCAAGCAGGTCTACTTCTACCTCTTCAAGCTGCTCAGGAAATGCATTCTGCAGATGAGCCAGCCCATAGTGGAGGGATCCCTGGGGAGCCCCCCCTTTGAGAAGCCCAATATTGAGCAGGGAGTATTGAACTTTGTGCAGTACAAGTTCAGCCACTTGCCGCCCAAAGAGAGGCAGACAATGTTTGAGCTGTCCAAAATGTTCCTCCTTTGCCTCAACTATTGGAAGCTGGAGACGCCCACACAGTTCCGCCAGCGCTCCCAGAAGGATGACGGCACAGCCTATAAGGTGGATTACACCAGGTGGCTTTGCTACTGCCACGTGCCCCAGAGCAATGACAGTCTGCCGCGCTACGAGACCACGCATGTGTTTGGCCGCAGCCTCCTCAAGTCCATCTTCACCGTCACGCGCCGGCAGTTGTTGGAGAAGTTCCGCGTGGAGAAGGACAAGCTGCTCCCTGAGAAACGCACCCTCATACTCACACACTTTCCCAAGTTCCTGTCCATGCTGGAAGAGGAGATATATGGGGAAAACTCGCCCATCTGGGAGGCAGATTTTACCATGCCGGCTTCTGAGGGAGCGCAGCTAGGGCATCCTACAGTGATCAGCCCAGCTGCTGTGTCCAGCACTCCTCCTTTCACCAAGAGCATCAGCTGCAGCTCCTCCCTGGGAACGATGAGTCTGGACACTGTGGTGGCAGAGCCCAAGACAGGAGAGAAAAGGAAGCTTCCAGAGGCCCTGACCCTGGAAGACGCCAAGAGGATCCGGGTTATGGGAGACATCCCCATGGAGCTGGTGAATGAGGTCATGATGACCATCACTGACCCTGCCGCCATGCTGGGCCCTGAGggcggccctcaggtcattgaggttctggggtacagagttacgagcctctacacgaccaGTTTGCTGTCAGCCAACGCTGCGCGGGATGAGACTGCAAGgctggaggagaggaggggaatcATTGAATTCCATGTCATTGGAAACTCTCTCTCCCAGAAATCCAACAAGAAGATCCTGATGTGGCTGGTGGGCCTGCAGAATGTCTTCTCCCACCAGCTACCCCGCATGCCTAAGGAGTATATCACCAGGCTGGTGTTTGATCCAAAACACAAAACCCTGGCCCTGATTAAGGATGGCCGAGTCATAGGAGGGATCTGCTTCAGGATGTTCCCCACTCAAGGCTTCACAGAGATCGTCTTTTGTGCAGTCACCTCCAATGAGCAGGTCAAGGGGTACGGAACCCACCTGATGAACCACTTAAAAGAGTATCACATCAAACACAGCATCCTATACTTCCTCACCTACGCTGACGAGTACGCCATCGGCTACTTCAAGAAGCAGGGTTTTTCCAAAGATATCAAAGTGCCAAAGAGCCGCTACCTGGGTTACATCAAGGACTATGAAGGGGCGACCCTGATGGAGTGTGAGCTCAATCCCAGAATCCCCTACACGGAACTCTCTCACATCATCAAGAGGCAGAAAGAGATTATCAAGAAACTGATTGAGAGGAAACAGAGCCAGATCAGGAAGGTGTATCCAGGCCTGACCTGTTTCAAAGAGGGCGTGCGGCAGATACCCGTGGAGAGCATACCTGGCATCCGAGAGACTGGATGGAAACCTAGTGGGAAGGAGAAATGtttggttcagtatggggaagactgcagacttgacaattggccagaagaccatcattga

Transcript

SKAU_T00133970

ATATGCCATTGGTTTTCCATGCATTCTGTCAGGAAGTAGGAGGTTCCCGGAAGCGTATTCCACAAGGCGGAAGCGAAGGCCATAGCCTGTGATGAGGAATCAACGAGAGCTGAGAAAGTGAAAGGgcgaaaaaataatttatttgtggCATTCCCAGTAACTGAACACATAAAGCACAGAAGGAACTTTAAATTAACTACTGCATATCACGTATCCCAGGACCAGGGCCCTTTCCGCTTTGCTCAGCCCCAACTGGCCTAGCCCAGCTCCGCCCGGCCACGTCCAGCCAAGCACACCCTTGCCTAAACTCCGCCTCCAGCCAAGCACAGCCCAGCCTCATCTACGCCCCAGCCAAGCACATCCCGTCACGGCACAGCCACAGTCTTCTCTCCCAGGGTAGCCTCTGCTCAGCTCCATGGCGGGTCGGGGAGGACCGGCAAGATCCAATGGTCCGGCGGCAGGAAACAAGATCTGCCAATTTAAGCTGGTGCTACTGGGGGAGTCGGCGGTGGGCAAGTCCAGTCTGGTGCTGCGCTTTGTAAAAGGCCAGTTCCATGAGTACCAAGAGAGCACCATTGGAGCTGCCTTCCTCACACAGACGGTCTGTTTGGACGATACAACAGTAAAGTTTGAAATCTGGGACACAGCTGGCCAGGAGAGATATCACAGCCTGGCGCCGATGTATTACAGAGGGGCCCAGGCGGCCATCGTGGTCTATGACATCACTAACACAGATACTTTTGCACGTGCAAAGAACTGGGTGAAGGAACTCCAGCGACAAGCCAGCCCCAACATTGTGATTGCCCTGGCAGGGAACAAGGCAGACCTCGCCAACAAGAGAGCCGTTGACTTCCAGGAAGCACAAGCCTACGCAGACGACAACAGCCTGCTTTTCATGGAGACTTCGGCCAAGACTGCAATGAACCCAAGAAGCTGCCGAAGAATGAGCCGCAGAGTGGAACAGGCGCAGGGGGCCGGGCCAGGGCAGGAGTGGATCTCCAGGATGCCGCCCCCCAGAGCCGAAGCGGCCAGTGCTGCAGCGGCAGCAACTAACAATGCACTGAGCCAGCCAACAACAACCCAACCGACGACCAACGGCCGCGAGACGAAACCAACCCCGAAGGAAAAGAAAACGATGAAACGAGATCCATTCTTGCCCGCCTCCTTACAACCCCGGCCTCAACAGACTCAGTCCAGCGGGACAACTGGGTCGAATGCGATGCCTGGATCCGCGAACTGTGATCCGGCCAGGCCGGGTCTAAGCCAACAACAACGGGCCAGTCAGAAGAAAGCGCAAGTTCGAGCGTTTCCACGGGCGAAAAAGCTTGAGAAACTCGGAGTCTTCTCAGCTtgtaagGCCAATGACTCATGCAAGTGCAATGGCTGGAAGAACCCTCATCCACCCAACGCCACCCGCATGGACCTCCAACAGCAAGCAGCAAGCCTGAGTGAACCGTGCCGCAGCTGTGGCCATGCTCTGGCGGACCATGTCTCCCACTTGGAGAATGTGTCGGAGGAGGAGATCAACCGACTGCTGGGCATGGTAGTAGATGTGGAGAACCTTTTCATGTCCGTCCATAAGGAGGAGGACACTGACACCAAGCAGGTCTACTTCTACCTCTTCAAGCTGCTCAGGAAATGCATTCTGCAGATGAGCCAGCCCATAGTGGAGGGATCCCTGGGGAGCCCCCCCTTTGAGAAGCCCAATATTGAGCAGGGAGTATTGAACTTTGTGCAGTACAAGTTCAGCCACTTGCCGCCCAAAGAGAGGCAGACAATGTTTGAGCTGTCCAAAATGTTCCTCCTTTGCCTCAACTATTGGAAGCTGGAGACGCCCACACAGTTCCGCCAGCGCTCCCAGAAGGATGACGGCACAGCCTATAAGGTGGATTACACCAGGTGGCTTTGCTACTGCCACGTGCCCCAGAGCAATGACAGTCTGCCGCGCTACGAGACCACGCATGTGTTTGGCCGCAGCCTCCTCAAGTCCATCTTCACCGTCACGCGCCGGCAGTTGTTGGAGAAGTTCCGCGTGGAGAAGGACAAGCTGCTCCCTGAGAAACGCACCCTCATACTCACACACTTTCCCAAGTTCCTGTCCATGCTGGAAGAGGAGATATATGGGGAAAACTCGCCCATCTGGGAGGCAGATTTTACCATGCCGGCTTCTGAGGGAGCGCAGCTAGGGCATCCTACAGTGATCAGCCCAGCTGCTGTGTCCAGCACTCCTCCTTTCACCAAGAGCATCAGCTGCAGCTCCTCCCTGGGAACGATGAGTCTGGACACTGTGGTGGCAGAGCCCAAGACAGGAGAGAAAAGGAAGCTTCCAGAGGCCCTGACCCTGGAAGACGCCAAGAGGATCCGGGTTATGGGAGACATCCCCATGGAGCTGGTGAATGAGGTCATGATGACCATCACTGACCCTGCCGCCATGCTGGGCCCTGAGggcggccctcaggtcattgaggttctggggtacagagttacgagcctctacacgaccaGTTTGCTGTCAGCCAACGCTGCGCGGGATGAGACTGCAAGgctggaggagaggaggggaatcATTGAATTCCATGTCATTGGAAACTCTCTCTCCCAGAAATCCAACAAGAAGATCCTGATGTGGCTGGTGGGCCTGCAGAATGTCTTCTCCCACCAGCTACCCCGCATGCCTAAGGAGTATATCACCAGGCTGGTGTTTGATCCAAAACACAAAACCCTGGCCCTGATTAAGGATGGCCGAGTCATAGGAGGGATCTGCTTCAGGATGTTCCCCACTCAAGGCTTCACAGAGATCGTCTTTTGTGCAGTCACCTCCAATGAGCAGGTCAAGGGGTACGGAACCCACCTGATGAACCACTTAAAAGAGTATCACATCAAACACAGCATCCTATACTTCCTCACCTACGCTGACGAGTACGCCATCGGCTACTTCAAGAAGCAGGGTTTTTCCAAAGATATCAAAGTGCCAAAGAGCCGCTACCTGGGTTACATCAAGGACTATGAAGGGGCGACCCTGATGGAGTGTGAGCTCAATCCCAGAATCCCCTACACGGAACTCTCTCACATCATCAAGAGGCAGAAAGAGATTATCAAGAAACTGATTGAGAGGAAACAGAGCCAGATCAGGAAGGTGTATCCAGGCCTGACCTGTTTCAAAGAGGGCGTGCGGCAGATACCCGTGGAGAGCATACCTGGCATCCGAGAGACTGGATGGAAACCTAGTGGGAAGGAGAAATGtttggttcagtatggggaagactgcagacttgacaattggccagaagaccatcattga

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF00583	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan
PF06466	PCAF_N	PCAF (P300/CBP-associated factor) N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000182	Domain	GNAT domain	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR009464	Domain	PCAF, N-terminal	Interproscan
IPR016181	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR037800	Family	Histone acetyltransferase GCN5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45750	GH11602P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000123	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0004402	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0010484	Molecular Function	histone H3 acetyltransferase activity	Interproscan
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0043966	Biological Process	obsolete histone H3 acetylation	Interproscan
GO:0044154	Biological Process	obsolete histone H3-K14 acetylation	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0140672	Cellular Component	ATAC complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-