Detailed information of SKAU_T00123760 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T0012376026S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4CM056379.12181330321913743-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Transcription Factors Familyzf-CCCH

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan
PF01399PCIPCI domainDomainInterproscan
PF13086AAA_11AAA domainDomainInterproscan
PF13087AAA_12AAA domainDomainInterproscan
PF18098RPN5_C26S proteasome regulatory subunit RPN5 C-terminal domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR000717DomainProteasome component (PCI) domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR040134Family26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4Interproscan
IPR040896Domain26S proteasome regulatory subunit RPN5, C-terminal domainInterproscan
IPR041677DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR041679DomainDNA2/NAM7 helicase-like, C-terminalInterproscan
IPR047187DomainUpf1-like, C-terminal helicase domainInterproscan
IPR049569DomainHelicase with zinc finger, DEAD-box 1Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR1085526S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008541Cellular Componentproteasome regulatory particle, lid subcomplexInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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