Gene detail

Detailed information of SKAU_T00123180 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00123180	NUCLEAR PROTEIN LOCALIZATION 4	CM056379.1	20216766	20293088	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00123180

ATGAGCTCAGCTCCATGTAGCAAGGGGGCGGGGGGACAGACGACCTTGCTGTGTGAGATGGATGTCCTGTCAGGGCTCTCAATCTGCTTGGCTCAGGGGCCGTACCGGCTGCTGTTACCTCTTCCTGGGAACGGAGCCTTTTCAGAAAGTGCAGAGCCTTACCTGCAGTGGGCCCACTCCTGTGGGCTGCAGATGGACGCGCTGCTGAGTAGTATCATACGTGTGCAGTCTCCGGACGGGATGAAAAAGATCCCGTCCACCAAGCGGGAGACGGCGGCCGCCTTCCTGAAGAAGGTTGCTAAAGAGTTTGGCTTCAGCTCCAACGGGTTCTCTGTGTATCTGAACCGCAACAAGACGGAAGAGATCGTCTCCCAGAACAAGACCCTCAGCCTGCTTAAGATCAAGCACGGGGACATGCTCTTCCTGTTTCCGTCAGGCTCTCCTGGGCCCTCAGGTGAGGTCATGGATGTGACCGGCCCTCACACTTCCTCTTCGTTACCTTCAACGTCGTCTTCATCATccgcctcctcctcttcctccttcgcCGCTGCCCCTTCCTCCTCAGTAATTCCCCGCTCGCAGTCCGCACCCCAGATCTCCGATGACGACATTGACCAGTATCTGGCTAAACAGGATGGCAAGATCTACAGGAACAGAGACCCTCAGCTGTGTAGACACGGTCCAATGGGGAAGTGTGTACACTGTGTTCCATTAGAGCCCTTTGATGAGGATTACCTGAACCACCTGGACCCTCCTGTTAAGCACATGTCATTCCACGCCTACATCCGCAAGCTGACAGGTGGTGCTGACAAAGGGAAGTTTGTAGCTCTGGAGAATATCAGCTGTAAGATAAAGTCGGGCTGTGAGGGCCATCCACCCTGGCCTGAGGGAATCTGCACCAAGTGCCAACCCAGTGCCCTCACTCTCAACCGCCAGAAATACAGACACGTGGATAACATCATGTTTGAGAACCACACCATCGCCGACCGCTTCCTGGACTTCTGGCGGAAGACAGGAAGTCAGCGAATGGGCTTCCTGTACGGCCGCTACACCGAGCACAAGGACATCCCCCTGGGCTTGCGAGCTGAGGTGGCCGCCATCTACGAACCCCCACAGATTGCAACTCAGAACAGTCTGGAGTTAGTGGATGATCCCAAGGCTGCCGCGGTGGAGGAGATCGCAGCGAAACTGGGCCTCCGTAAGgTGGGCTGGATCTTCACAGACCTCCTCTCAGAGGATACTAGAATAGGCACAGTGCGTTACACGAGGAACAAGGACTCGTACTTCCTGAGCGCAGAGGAGTGTATAACAGCCGGAGACTTTCAGAACCGGCAGCCCAATCCCTGCAGACTCTCCCCCGACGGCCACTTCGGGTCCAAGTTCGTCACCGTGGTAGCAACAGGGGGTCCTGATAATCAGGTGCACTTTGAGGGGTACCAGGTGTCCAATCAGTGCATGGCGCTGGTGCGGGACGAGTGCCTGCTTCCCTGCCGGGACGCCCCGGAACTGGGGTACGCCAAGGAGTCCAGCACCGAACAGTATGCCCCCGACGTCTTCTACAAGGACAAAGACAAATTTGGGAATGACATCACGTACCTTGCGCGGCCGCTGCCTGTGGAGTACCTGATCATCGATATCACCACCACCTTCCCAAAGGACCCTGCATACACCTTTACCTCCCCACATCGCTTTCCCATCGAGAACCGGGACGTGCTGGGAGAGACACAGgatTTCCATAGTTTAGCCTCGTACCTATCCCAGAGTGCATCATCAGTGTTTCTGGACTTGGTCTCAGACTTCCACCTGCTGCTCTTCCTGGTCACCAACGAGGTCATGCCCCTGAAGGACAGCATCGGTCTCCTGCTGGAAGCAGTGAAAACGTCCAATGAGGAGCTGGCACAGACCTGGAAGAAGTCTGAGCAGTGGGCCACTATCGAGCAGCTGTGTGGTACAGTGGGCGGGCAGGCATCCAGCGCACAAGAGTTTGGCGCCATGGGAGGACCCTCCATCCCAGCATCCTCCTCTGCCATGTGGTCCTGCCTCCACTGCACCTTCATGAACCAGCCTGGCACAGAGCTCTTCTGCAGTCAGAGCGATGTGTACAATCCCATCAGGCTTTCCTCAGCCTTCAAAGGCTTCGGCAAcgctggggtcagagTGATTATGGAGATGAAGAGGACCGTCGCCCTGGCTTGCTTGTGTCTGGCCACGCTGTGCAGCGCGGAGAAGGCGAGACGACAACAGAGCACCGGGTGGGACGACCGACCGGAGGAGAAGGGAAACGCTAAGGCCTGTGCCAATCTTACCATGGTTCTGGATAACTGGAAGTTTGCCATCACGAGCCAAGTCAAAGATCTCCTTCTCAATGACCACAGAACCATACTGCCTGACTATGGGAGGATCCAGCCTCTGTCCGAGGCGTTGGGGAACCTGTATAAGGAGTTTAACAGCTTGAAGGACCGGCTGGGGGACCTCACCGCTCGCTTTGATGGGGTGGAGGTGTTTGTGGAGGACATGCGGATGGGCCGCGGCCCCCCTCCTCCCAGAGCCAaacgccccgccccgcccagccAGGACCTGGCCACGCCCAATGCTGAAGGGGGGAAGGCCTCCCTGCTCCCCAACCATTCACCGTCAATAGGAATGCAGGCAGTGAGGACAAAAGGCTGGAATGCTAACTGTTGCTTCCCTCCCAGCGTCAGGTCCACACTGGAGAACCATCTGGACCTGaactacccccccaccccccgtcctGCACTTGGACAGTCTGTCTGGCTCCGGTGTGCTGGAGAAGGCAGCCCATATGTGGAGACAGTAGAATCGTCGCCGCCAAGCCGAAACCGCCTGCTTCgTACTGATAGGATGCACGCTGCCCATAGCCCCGGCCCTCTGCCCGTGGGTGGAGCTGGGGACGGCCCTGATCTCTGCCTCTCTGGCTCCCAGCTAGCTGTATCGCGCCGACCCAGCAGTGCGTCGCCAGGGAAACACTTCTCCCGGtccgtgtctgtgtctgtggcagGTGACGGCAGGGGAAAGCGGAATACGCTGGCGGAAGTTGGACTGGGCAGTTCCCGCTCCATCAAGAACCTGCGGCGCTCCAACAGTACCACACAGGTCAACCAGCGAGCCGATATCAGCGTCAGGGAGGAGTCATCGGAGGACTTCCTGTCGTTTTTTGACCGCAGTCTGGATGGCAGGAGGAAGCTAGCCAGCCTCAGCAAAACCTCTACGGACCGTACTACATGGAACATCCTGgatgaCCAGCCACGGGTGTTTCCTGTCCCCAGCTCCCGTAGTGCGGCAGTGTTGACTCCCCCACAGGGCCGAGAAAGAGAGAGGCGGGGCGTCGCACTGGCCCCCAACTTCACCGCCAATAACAGGAGTAACAAGGGAGCGGTGGGCAACGCCGTGACGACCATCCTGCACAACAACCACTCAGACCAGCCCCTCACTCCCAAGAGCTCCAATCAGAAGCCTTCTTTCAATAATATCATGAAAGCCACAGCCCGTGAGGAGAGTCCGGTGGAGAGTGGATCTCTGACCAAATCGCAGAAGAACTTCTCGTCCTCGTCCAACAACAACAACGCCAGCTGCAGCAGCCCCGCCCAGGCCAGCGGCCCCGCCCAGCTCAGGAGGCATGAGGTCACAGAGGAGGAAGCTGAAAGGTCAAGGCTGTAG

Transcript

SKAU_T00123180

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|NZF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05020	zf-NPL4	NPL4 family, putative zinc binding region	Family	Interproscan
PF05021	NPL4	NPL4 family	Family	Interproscan
PF11543	UN_NPL4	Nuclear pore localisation protein NPL4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007716	Domain	NPL4, zinc-binding putative	Interproscan
IPR007717	Domain	Nuclear pore localisation protein NPL4, C-terminal	Interproscan
IPR016563	Family	Nuclear protein localization protein 4	Interproscan
IPR024682	Domain	Nuclear pore localisation protein Npl4, ubiquitin-like domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR037518	Domain	MPN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12710	NUCLEAR PROTEIN LOCALIZATION 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-