Gene detail

Detailed information of SKAU_T00122870 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00122870	UNCHARACTERIZED	CM056379.1	19295670	19305416	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00122870

GAAATATGGAACTCAAGCCTGTTGTTACTTGTTTCCCTTTCCCCCTGCCATTTCCGGTGCTGTTAAGTATCTCTTGTCGTTGCTTGGCGACAAGAGCTCGAGTTAGTAGCTATGCATGACAACAGACGGGACTGAAGCGCCCATTTTCATTGGTTTTCTTCAGTAGTTTCGGGGAATTTTTTGTTAATCATACAATCGTTTTCCCTCTTCTGTGGTTATTTTCTCTGGATGGTATCTGGAACTGCTGTTAACCACTTGTTTCACGCTCCTTGCTGTTGAAAGCGAGTGTGTCAAATTGTGACCACAGTTTGCAACAACCAAGTTAGTGTCATGATCCTGTCCCGAGTAAAACCTGCTGTAGGGGGAGAGGCTCCAACCagtgagaagaagaagaaaaacaaggGGAAGAAGACTCCACGAGTGGAGGACTACCTGAACCAGAGAGATTACCTGGGATCCATCACGCTGCTGGAGTTCCAGCGTAGTGCAGGGGAGCGAGAGGAGGATGCAGATCTGTGGCTGGGCTACTGTGCTTTTCACCTGGGGGACTACAGGAAAGCTATGGAGGAGTACAAAGCTTTGACCGAGAGGTCAGGCTGTCCAGCTGACGTGTGGGTATACCTGGCCTGCACTCTCTTTTTCCTGGGGTTCTACAAGGAGGCAGAGGAGGCTGCGCTTAAAGCTCCAAAGAGCCAGCTACAGAACAGGCTGCTCTTCCACTTGGCTCACAAGTTCAATGATGAGAAGAAGCTGATGGGTTTCCATCAGAACCTGGAGGATGTGACTGAGGACCAGCTCAGCTTGGCTTCCATTCACTACATGCGCTCTCACTACCAGGAGGCCATCGATATCTACAAGCGCATCTTACTGCAGAACAGAGACTTCCTGGCCCTCAACGTTTATGTAGCTCTGTGTTACTACAAGTTGGATTATTACGACGTTTCCCAGGAAGTTTTGGCGGTATACCTACAGAGCATTCCTGATTCAACCATCGCGCTCAACCTCAAGGCCTGCAATCACTTCAGGCTCTACAACGGCAAGGCAGCTGAGGCAGAGTTGAAGAATCTGATAGACATTTCCTCCAGCTCCTTTGAGTTTGCCAAGGAACTCATCCGGCATAATTTAGTGGTGTTTCGGGGTGGAGAAGGGGCCCTACAGGTGCTGCCCCCCTTGATTGATGTCATCTCAGAGGCTCGTCTCAACTTGGTCATATACTACCTCAGGCAAGATGATGTGCAGGAGGCTTACAATCTCATAAAAGACTTAGAACCCACTACACCACAGGAGTATATTTTGAAAGGTGTGGTAAATGCAGCTTTGGGTCAAGAAGTTGGATCGAGGGATCATCTGAAGATTGCACAGCAGTTCTTCCAGCTGGTTGGAGGCTCAGCAAGTGAATGTGATACTATCCCTGGCAGGCAGTGCATGGCTTCCTGTTTCTTCCTGCTAAGGCAGTTTGAGGATGTGCTCATCTACCTCAACTCTGTAAAGAGTTATTTCTACAATGAGGACACATTTAATTTCAACTATGCTCAGGCCAAGGCTGCTGTTGGCAACTACAGAGAAGCAGAGGAGGTGTTTCTGCTGATTCAGAGTGAGAAGATCAAGAATGACTATGTGTACCTGAGCTGGCTGGCACGCTGCTATATCATGAACAAAAAGGCCCGTTTAGCCTGGGAGCTATATCTGAAAATGGAGACTTCCGCCGAGTCCTTCAGCCTGTTGCAGCTTATCGCCAACGACTGCTACAAGATGGGGCAGTTCTATTACTCAGCGAAGGCTTTCGATATTCTGGAGCGGCTCGACCAGAACCCCGAGTACtgggaggggaagagaggggcCTGCGTGGGCATCTTTCAGCTCATACTGGCTGGCAGAGAGCCCAGAGAGACACTGAGAGAGGTACTACCACTGCTGAGGAACACTGGAAACCCACAGGTGGAGTACATCATCAGAGCCTTAAAGAAATGGGCTAAGGATAACAGGGTctcattgtaataataataaaactcttTTATCTACTGCTCAACATGAAGCATGTGCATATTAAGCACCAACTATGCTGGTGATTTGAATCACATGCCCCCcatcaaaaaatgaaaaataaaatgaaataaatctttGATCATTCCCAATATATATATAGACTGGATGCCTATCCCCAGGCTGAACTACAACATGTGAGGGTGTGCTGAAATCTGCCAGTAATGTATACTTACAAGTTAAAGTTCATTCACACTAACCTGTAAGATACATGTATATGTGTAGAAACGCATTGGAAATATCCAATGCCCTAAACATAAGTGGTTACATGTAAATACATTTGATGTAATATCCACATGCGCACAAACTCACCAGACCACGTAACACGTAATACTATAGCTTTATTTGCAATATTGTGTTTTTAACATTCATATACTTGATACAGTTGTGAATTTATACAAGTATGTATCATGCAATTGTGTACTCAGTTCTACTACTGTACAGTATCTGTAATTAAAGAGCTATTTTTTATTCACATAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR030511	Family	Tetratricopeptide repeat protein 26	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14781	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0030992	Cellular Component	intraciliary transport particle B	Interproscan
GO:0035720	Biological Process	intraciliary anterograde transport	Interproscan
GO:0035735	Biological Process	intraciliary transport involved in cilium assembly	Interproscan
GO:0036064	Cellular Component	ciliary basal body	Interproscan
GO:0097546	Cellular Component	ciliary base	Interproscan
GO:0120170	Molecular Function	intraciliary transport particle B binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-