Gene detail

Detailed information of SKAU_T00122070 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00122070	SNF2/RAD54 HELICASE FAMILY	CM056379.1	17703070	17723637	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00122070

ATGTCAACTCCAGACCCTCCCATGGGAGGGACTCCCCGACCGGGCCCCTCCCCAGGCCCCGGGCCCTCACCAGGAGCCATGTTGGGCCCCAGTCCTGGCCCCTCCCCTGGCTCCACCCACAGCATGATGGGACCCAGCCCAGGGACTCCCTCTACTGGACACCCCCTCCCACCACAGGTACCAGCAGGATACACCCAGGAGAACATGCACCAGATGCACAAGCCTTTGGAGGGCATGCATGAGAAGGGCATGCCTGAGGACCCTCGCTACGCACAGATGAAGGGCATGACCATGAGACCCGGGGCGCACAGCGGGATGGGACCCCCACCCAGCCCCATGGACCAGCATTCCCAAGgtTACCCCTCTCCATTGGGCGGTTCTGAGCACGCTCCCAGCCCTGTCCCGGCGAACGGCCCGCCCTCAGGCTCCCTCATGCCCTCGGGCCCCGGCGGGGTGGCCCTGGAGGGTGCGGACCCCCAGGCTTTGGGCCAGCCGAACCGGAGCGGGGTTCAGGCCGGAGGCGGCACCCCCGGTTCGGCCGGCAGCGCCGGCGGGCCTACCCCCTTCAACCAGAACCAGCTGCACCAGCTGCGGGCCCAGATCATGGCGTACAAGATGCTGGCGCGCGGCCAGCCCCTGCCAGACCACCTGCAGATGGCAGTACAGGGCAAGCGGCCCATGCCAGGGATGCAACAGCAGCCTGTCACCAGCCTGCCCTCCGCCCCCGGTGCCGGCCCCGGACCGGGCCCCGGACCCGCCCCTTCCAGCTACAACAGACCTCACGGGATGATGGGGCCCAACATGCCTCCCCCCGGACCCTCTGGTGTTCCTCCAGGAATGCAGGGCCAGCCCCCCAATGGACCCCCCAAAACATGGCCTGAAgGCCCGATGGTCAACGCCGCCGCCCCCTCCAGTGCTCCCCAGAAGCTCATCCCCCCGCAGCCCACGGGCCGCCCCTCTCCGGCTCCGCCCTCGGTGCCTCCGGCCGCCTCCCCCGTGCTGCCGCCCCAGACCCAGTCTCCCGGGCAACCCGCCCAGCCCGCCCCCATGGTGCCGCTGCACCAGAAGCAGAACCGCATCACCCCCATCCAGAAGCCCTGTGGTCTGGACCCCGTGGAGATTCTGCAGGAACGCGAGTACAGGCTGCAGGCTCGCATCGCTCACCGCATCCAGGAGCTGGAGAACCTGCCTGGGTCACTGGCTGGAGACCTGAGGACCAAAGCCAACATAGAGCTGAAGGCCCTGAGACTGCTCAACTTCCAGAGACAGCTGCGCCAGGAGGTGGTGGTGTGCATGCGGCGTGACTCCGCCCTGGAGACGGCCCTGGACGCCAAGGCCTACAAGCGTAGCAAGCGGCAGTCCCTGCGCGAGGCGCGCATCACCGAGAAGCTGGAGAAGCAGCAGAAGATCGAGCAGGAGCGCAAACGCAGACAGAAACACCAGGAATACCTCAACAGCATCCTCCAGCATGCCAAGGACTTCAAGGAGTACCACCGCTCCATCACTGGAAAGATCCAGAAACTCACCAAAGCTGTGGCCACTTACCACGCCAACACTGAGCGCGAGCAGAAGAAGGAGAACGAGCGCATCGAGAAGGAGAGAATGAGGAGGCTGATGGCTGAGGATGAGGAGGGCTACAGGAAGCTGATCGATCAGAAGAAGGACAAGCGCCTGGCCTACCTGCTGCAGCAGACGGACGAGTACGTGGCCAACCTCACAGAGCTGGTGCGCGCTCACAAGGCCGTGCAGGCCCtcaaggagaagaagaagaagaaaaagaagaagCAGAAGCTGGAGAATGCAGAGGGCCAGACTCCAGCTCTGGGGCCTGATGGAGAGCCCCTGGATGAGACCAGCCAGATGAGTGACCTGCCAGTCAAAGTGATCCATGTGGACAGCGGGAAGATCCTGACCGGCGTGGACGCCCCCAAGGCCGGGCAGCTGGACGCCTGGCTGGAGATGAACCCAGGgtACGAGGTGGCCCCCAGGTCTGACAGCGAGGACAGTGgctctgaggaagaggaggaggaagaggaggagcagccccagccccagccctccCAGGCTCCCgtggaggagaagaagaagattcCCGACCCCGACAGTGAGGAAGTGTCCGAGGTGGACGTCCGTCACATAATAGAACATGCCAAACAGGATGTGGATGATGAGTACGGGAGTGCCGCCTTCGCCCGCGGTTTGCAGTCCTACTACGCCGTGGCGCACGCCGTCACCGAGAGGGTGGATAAGCAGTCCTCTCTGCTAGTCAACGGGCAGCTGAAACAATACCAGGTCAAGGGCCTGGAGTGGGCTGGTGTCCCTGTATAA

Transcript

SKAU_T00122070

AACGAAGTAGAGGGGGGCGCTCCAGCCGCCGTGTCGTTAGGCGAAGAAATACAGTGAACGATACAAGCTGATGAGCAAGGGGGTTGGAACCGAAGTAATAGCTGGTTTGGTCGTCCTTTGTTTTATGCCAGATAGCTAgtgatgctagctagctagcaaccgaGCTGAGGAACACGAGGGGGGCGGGGAGATCAAGAGAGGGAGTGTGGGAGACCTACATCTGCGGCCGTCTGCAGGTCAGTGTGTGCCAGCTTGTTTGCGAGCAAGACCAGCTCTGAGAGATGTCAACTCCAGACCCTCCCATGGGAGGGACTCCCCGACCGGGCCCCTCCCCAGGCCCCGGGCCCTCACCAGGAGCCATGTTGGGCCCCAGTCCTGGCCCCTCCCCTGGCTCCACCCACAGCATGATGGGACCCAGCCCAGGGACTCCCTCTACTGGACACCCCCTCCCACCACAGGTACCAGCAGGATACACCCAGGAGAACATGCACCAGATGCACAAGCCTTTGGAGGGCATGCATGAGAAGGGCATGCCTGAGGACCCTCGCTACGCACAGATGAAGGGCATGACCATGAGACCCGGGGCGCACAGCGGGATGGGACCCCCACCCAGCCCCATGGACCAGCATTCCCAAGgtTACCCCTCTCCATTGGGCGGTTCTGAGCACGCTCCCAGCCCTGTCCCGGCGAACGGCCCGCCCTCAGGCTCCCTCATGCCCTCGGGCCCCGGCGGGGTGGCCCTGGAGGGTGCGGACCCCCAGGCTTTGGGCCAGCCGAACCGGAGCGGGGTTCAGGCCGGAGGCGGCACCCCCGGTTCGGCCGGCAGCGCCGGCGGGCCTACCCCCTTCAACCAGAACCAGCTGCACCAGCTGCGGGCCCAGATCATGGCGTACAAGATGCTGGCGCGCGGCCAGCCCCTGCCAGACCACCTGCAGATGGCAGTACAGGGCAAGCGGCCCATGCCAGGGATGCAACAGCAGCCTGTCACCAGCCTGCCCTCCGCCCCCGGTGCCGGCCCCGGACCGGGCCCCGGACCCGCCCCTTCCAGCTACAACAGACCTCACGGGATGATGGGGCCCAACATGCCTCCCCCCGGACCCTCTGGTGTTCCTCCAGGAATGCAGGGCCAGCCCCCCAATGGACCCCCCAAAACATGGCCTGAAgGCCCGATGGTCAACGCCGCCGCCCCCTCCAGTGCTCCCCAGAAGCTCATCCCCCCGCAGCCCACGGGCCGCCCCTCTCCGGCTCCGCCCTCGGTGCCTCCGGCCGCCTCCCCCGTGCTGCCGCCCCAGACCCAGTCTCCCGGGCAACCCGCCCAGCCCGCCCCCATGGTGCCGCTGCACCAGAAGCAGAACCGCATCACCCCCATCCAGAAGCCCTGTGGTCTGGACCCCGTGGAGATTCTGCAGGAACGCGAGTACAGGCTGCAGGCTCGCATCGCTCACCGCATCCAGGAGCTGGAGAACCTGCCTGGGTCACTGGCTGGAGACCTGAGGACCAAAGCCAACATAGAGCTGAAGGCCCTGAGACTGCTCAACTTCCAGAGACAGCTGCGCCAGGAGGTGGTGGTGTGCATGCGGCGTGACTCCGCCCTGGAGACGGCCCTGGACGCCAAGGCCTACAAGCGTAGCAAGCGGCAGTCCCTGCGCGAGGCGCGCATCACCGAGAAGCTGGAGAAGCAGCAGAAGATCGAGCAGGAGCGCAAACGCAGACAGAAACACCAGGAATACCTCAACAGCATCCTCCAGCATGCCAAGGACTTCAAGGAGTACCACCGCTCCATCACTGGAAAGATCCAGAAACTCACCAAAGCTGTGGCCACTTACCACGCCAACACTGAGCGCGAGCAGAAGAAGGAGAACGAGCGCATCGAGAAGGAGAGAATGAGGAGGCTGATGGCTGAGGATGAGGAGGGCTACAGGAAGCTGATCGATCAGAAGAAGGACAAGCGCCTGGCCTACCTGCTGCAGCAGACGGACGAGTACGTGGCCAACCTCACAGAGCTGGTGCGCGCTCACAAGGCCGTGCAGGCCCtcaaggagaagaagaagaagaaaaagaagaagCAGAAGCTGGAGAATGCAGAGGGCCAGACTCCAGCTCTGGGGCCTGATGGAGAGCCCCTGGATGAGACCAGCCAGATGAGTGACCTGCCAGTCAAAGTGATCCATGTGGACAGCGGGAAGATCCTGACCGGCGTGGACGCCCCCAAGGCCGGGCAGCTGGACGCCTGGCTGGAGATGAACCCAGGgtACGAGGTGGCCCCCAGGTCTGACAGCGAGGACAGTGgctctgaggaagaggaggaggaagaggaggagcagccccagccccagccctccCAGGCTCCCgtggaggagaagaagaagattcCCGACCCCGACAGTGAGGAAGTGTCCGAGGTGGACGTCCGTCACATAATAGAACATGCCAAACAGGATGTGGATGATGAGTACGGGAGTGCCGCCTTCGCCCGCGGTTTGCAGTCCTACTACGCCGTGGCGCACGCCGTCACCGAGAGGGTGGATAAGCAGTCCTCTCTGCTAGTCAACGGGCAGCTGAAACAATACCAGGTCAAGGGCCTGGAGTGGGCTGGTGTCCCTGTATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07529	HSA	HSA domain	Family	Interproscan
PF07533	BRK	BRK domain	Domain	Interproscan
PF08880	QLQ	QLQ	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006576	Domain	BRK domain	Interproscan
IPR014012	Domain	Helicase/SANT-associated domain	Interproscan
IPR014978	Domain	Glutamine-Leucine-Glutamine, QLQ	Interproscan
IPR037259	Homologous_superfamily	BRK domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10799	SNF2/RAD54 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-