Gene detail

Detailed information of SKAU_T00121570 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00121570	RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER	CM056379.1	16654048	16677582	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00121570

Transcript

SKAU_T00121570

ATGCAATCACAGGTTATAGAGTATTTCTATCAGCAAAGCGGGAAAGTGGGGTGTGAACAGCAGCGCGAGGAACAACTAGTTGGCCGGCTACGACCCCACCATTTGGGATTTCAAACTGAGaagatTACTCTTGTTACTGCTACGGTCAGCTGGAAAACTATGGAGGACCAGGTGGTAGAAAATGAAGATGGATATCAAGATGATGAGGAATCCTTTTTCCAAGACATCGACCTTTTACAAAAGCATGGGATCAACATGGCAGATATCAAAAAGCTGAAGTCTATTGGTATCTGCACTGTGAAGGGGATTCAGATGACCACCCGCCGTGCTCTCTGTAATGTCAAGGGCTTGTCTGAGGCCAAGGTTGACAAAATCAAAGAGGCTGCTGGGAAATTGCTGAGCAATGGTTTCTTGACAGCATTTGAATACAGCGAGAGAAGAAAGCAAGTGTTCCGCATCACAACAGGCAGTCTGGAGTTTGACAAACTCGTTGGTGGAGGTATTGAGAGTATGGCTATAACAGAGGCTTTTGGCGAGTTCAGAACGGGCAAGACCCAGCTCTCTCATACATTATGTGTGACGGCTCAGCTCCCGGGAGACAATGGATACACAGGAGGGAAGGTCATCTTCATTGACACAGAAAACACCTTTCGGCCAGACAAGCTGAAGGGTATAGCGGACAGGTTCAGTGTGGACCAAGAGGCTGTGCTGGACAACGTGTTATATGCTCGTGCCTACACCAGCGAACATCAGATGGAGCTGTTGGACTTTGTGGCGGCCAAATTCCACGAGGAGGGAGGCGTGTTCAAACTGCTGATCATTGACTCCATTATGGCTCTGTTCCGGGTGGATTTCTCTGGCCGGGGGGAGCTTGCAGAGAGGCAGCAGAAACTGGCTCAGATGCTCTCTCGACTGCAGAAGATCTCTGAAGAGTACAACGTGGCCGTGTTCGTAACCAACCAGATGACGGCAGACCCTGGAGCTGGGATGACGTTTCAGGCGGACCCCAAGAAGCCTATTGGAGGACACATTCTAGCCCATGCCTCAACCACACGAATCAGCTTGAGGAAAGGGAGGGGAGAGATGAGAATTGCTAAAATATTTGACAGCCCTGACATGCCAGAAAATGAAGCCACTTTTGCCATCACTGCAGGAGGGATTGCTGATGCCAAAGAGAATGCGCGCCTACGTCAAAGTGAAGATTACGGTATTTGTGATTCTTTAAACTTGGAAATGAGGGGAAGTTCATCGTATGGAGACCGAGATCGGGACCGCGGACGTGACCGAGGGCCTCGTTTTGGGTCGAGTCGGGGTGGCCCTCCTCCCAACAAGAAGTTTGGGAACCCGGGGGAGCGTCTGCGCAAGAAGAAATGGGACATGGATGAGCTGCCCAAGTTTGAGAAGAACTTCTACAACGAGCACCCGGAAGTGCTACGCATGAGCCAGTATGACATTGATGAGTTTCGCAGGAAGAAGGAGATCACCATCCGGGGAACAGGCTGCCCGAAGGCGCTCACCAACTTTCACCAGGCTCATTTCCCTCagTACGTGATTGACGTGCTGGTGGGGCAGAACTTCAAGGAGCCCACGGCCATCCAGGCACAGGGCTTCCCGCTCGCTCTCAGCGGGAGGGACATGGTGGGCATCGCCCAGACTGGATCTGGGAAGACCCTGGCGtatCTTCTGCCTGCTATAGTGCACATTAACCACCAGCCTTACCTGGAACGAGGGGATGGACCCATTTGCCTGGTTCTGGCTCCGACCCGAGAGCTGGCCCAGCAGGTGCAGCAGGTGTCGTTTGAGTACGGCAAGTCCTCCCGCATCAAGAGCACCTGTGTGTACGGGGGGGCGCCCAAGGGCCCCCAGATACGGGACctggagagagGAGTGGAGGTCTGCATCGCGACCCCGGGACGCCTCATAGACTTCCTGGAGGCGGGGAAGACCAACCTGCGCCGCTGCACCTACCTGGTGCTGGACGAGGCCGACCGCATGCTGGACATGGGCTTCGAGCCGCAGATCCGCAAGATCGTGGACCAGATTCGGcctgaccGGCAGACGCTGATGTGGAGCGCCACCTGGCCGAAGGAGGTGCGGCAGCTGGCGGAGGACTTCCTGCGGGACTACGTGCAGATCAACGTGGGCGCCCTGGAGCTGAGCGCCAACCACAACATCCTACAGATCGTCGACGTCTGCATGGAGAGCGAGAAGGACAACAAACTGATCCAGCTGATGGAGGAGATCATGGCGGAGAAGGAGAACAAGACCATCATCTTTGTGGAGACGAAGAAGCGTTGTGACGAGCTGACCCGCCGCATGAGGAGAGATGGCTGGCCTGCAATGTGTATCCATGGTGACAAGAGCCAGCCGGAGAGAGACTGGGTACTGACAGAGTTCCGCAGTGGCAAAGCCCCAATTCTCATTGCCACTGATGTGGCATCCCGTGGTCTAGTCTCTCTTCCGGCACTAGAAGCGCACAGGCCCACTGGAGCCTGCAGCCGGACCTAGGCATGACTAATCCAAGCCTGAGTTGAGGAGAGATACAGGGGAGAAGGCCTGATTTATCAATCCCAGACACAGCAATCTCTCCGAAACCAGAACAAAACAAGGCCCTCAAATGAGGCCCCCCACCCGCTTCCAGGAAAACACGCTGCCCGGGATTCCTGGGAGTCCAAATTTGAAACTGGGAGGAGGGGGTGTGCTGAGAGGGCTAAGAGAGGGGGCATTGTTGGGGGGCTGGGGCCCCTTAAGTACCTCACCGCTTGCTGTGGTAAAGCACGACGACGTCACTGCAGTTCTCGAGTGCTTCGTCTTATCCGTGGAGTCTTGTATTTTGGCAGAGCTCAGTAGAAATGCTCAGGTTACAGCTTAGCGTAGCATGCTGAACGTACAAGGGTTGTCCAAGGAAGGTGGGTATTTGGTAGCTTCCATTTTGAATTAATATTTCAGTCAAATCTTCTTTATGCACTTGTTTGGGGGGAGAACCCTGTGAAAAACAGGTTCGGTTTCAGAAAGGGAAGGGAGGGGATTCTGAAGGGTATTGCTGTAGTAGCAATTTTAGAACATCACTTGGGTCATTTGGTTTAGTTTGACTGAAGAGGGAGGAGCTGTGTGCATTGACTCAGAGCCGTTGAGAGAACTGTAGTCCATACTCGCTGCTGTAGGAATGTTTATAAATGGCAGGTGGCATATGTCACTGTTATTAAAGGGCCACGCTTATTGCAGTGTGAGAAAAGAGTTGTTGGCGGATTGAGACCACAGCGCATTGAGGCCCCCTCGCCCCTCCCATCTGCCCCCTCGCCTCTCTGatctgccccgccccccccccgggGCCCTCCGCACaagcctgtcccctctgccctCTCCTGTGGCTGGGCGGGCCTCTCCCTCTGCAAGCGTCATGTCTGGTCCTGGCTGGCAGGAGTCCTGGCCTGGTggagtctctctcgctctctctcgtcaTTTCCCAAAATCCATACTCCTGAAGGCAGGCTTTTTTCTCAGACTGTTGCTCTTGTCAGTTTCCTTTCCTCTGTCGGCAGCATCAACCCAACCCCTCttgtcttttctttctttttctccgtCCCACTTTCGCTCTCTAACATTCCTCCTTCCTTTCCTGTCTCAGTGTATCTGTCCCTTGTGGCCGATTATTCCTTTGTGTGCATCATGCcgagacaacaacaacaacaaccaaaaaTCGAACAAAAAAAGCAacgctccccccaccccctcaaaaGACTGCTCTCCAGGGAGCTTTTTCAGCCTTGGGTTTCGTGACGCAGCtcgacccccccgccccctcaaaGCCCCACTGTCTGTTTCTTGTTACTGCTGCTAAAGCGTGTCTAAGCTGGGCTCTCAGGCAAGCTGCCTTTCTGTGGGAAGGACCTTCGCAAACTGCTGGGTTCTCGCCGTGTGTGGGAAACGAGACATCCGCACCCTAAAAACAACTGAGAAATCCTTTACCGACTGCAGCGTCCCCCCAGCGTCGCGCTGTCCCCCGTAGAGGTGCCGTGGGAGTTAACGTAATGCCCTTTTTAACTGTTTTAATTCAATAGTGTCATTGTCCCAAGGTAGGTGATACCGTTACTCAGTGCCCTTTAGGGCTCTATGTGCTTTTGTGAGGTCAGCAAAAGGACAGCTTTCTCAGCCAATCAAGGAGGGGGGAGGATTTAGAGTTATTTCCTGTTTGTTTGATGCCTGTTAGCAAAGCTGCAGGTTTGCTTTTAACAGAAATATGATCGTAGCTAAAGTAGAATAGAGGAAGTCGTTTTCCAAACTACATATGAAAGTCTTATTGTACCCCCTCCTTCTATTAGTTTCACACAAGGCAGCTTATAGCACAGTAATGATTCATTGCTGAGGTTTGCTTGGATCTTGGTTCATTTGTATACTGTAGCCTGGGTAGTGTGAGTAGGTACTACATCCCCTGTTTTTCACCTCTGGTTCTCAAGCCCCCTTACAGTAGCTTCCCGTTTACCACTGGGCATCCGACACCAGCAAGCTCTCCTCCAGGAAAACCGTAATGAGAGAAGAGTCTGTCCTTTGCTGGGGGGGAAAAGTCCTCCGACAGACGAGGAGAGCAAATAAGAGCTTGGTGTTGGGTCCAGTCCGTGTCCTGCAACGCGGGGAGAGAGTGAGCTGCTCGGGTCCGGAGTTGTGGTTCTTTGTGTGGGGCAGGGAGGATCGAATTTTTTttccgcccccctccctccccagccACTCCAAGTGACCCGGGACTGATCAGGGGGGGACAGAGGGAGCTAACCTTGTAAAACACCACTTAAACAGGGTAAGTACCTCAACCCCCCCCTtctccaccacctcctccccacattTCCATCTGCTTCATTTAAAAACACCCAGGATTGAAATCCAGTGGATTTTGATGAGTGCTGTTGCAGGACAGTTGAGCGATTGAGAATCAGTGCTGTGTTCTTTATCTTTCTCTCCCAAACATAGTCTGTATGATGGATGTCTGTGCATTTCAATCGGCCCATTGCGGAGTAAATACCCGTCTTAATCTGTCAAAAACTATAGGAACCCTGTGATTTCTCAAGCGCAGCAATGTTGTCAGAGCCCCATCTGTAATGAGAAacagactttaaaaaaattatcgtCATAAGCTCCACAGACAACAAAGTCATTCCCTGTTTGCCCCACTGATCCCCCAAATCCTTCAGAGGGAAAAAATTTGTCTTGGCAGTGCATACACAAAAATATCCCCAGCCTAAATTTCTTTCATTTGGAAActgatatttatttaatatgttgAACTCAAAAGTCCTTTTCACAAAAACGTTGTATTTCAGGAACAGGTATAAAAATGGTTCTTGTGCCATACATTTTCACACTCAACCAGGATGTTCTTGTGCTTGTCACTCACTGTTCCCTGGACTACCTCTTATgacttgtgtgtgtttggttggGTTTCCTAGGCCTTCAGGCAGACTCTAATGTAGCAAAACATTTCCATCAAAGGCCGTTGTGATCTCTCGTGTCAACTTGGTGGACTGACTGAACCATGTTGTGTATACTGAAATTATGAGATTTATACTTTTGCCTTTTAAAATGCCAAGTTAGCCAACATGATAATATACAACTTTTAACATGTCaagttagctatattaatttactTTATTGTGTTTAAATACTTCAAATTATGATTTAGTGGTAATTAGTTCAGTGGACAGGTAAGTGCCTTTTTAAAGGTTAGATTTAGGATGGGTTTGTCAGAATATTCAGTCTTTTAAAAACCTTTTTGAAAAAAAGTGACAATTTTCTTTGCATTAAAATGTTTGCAGCAGAGTTACAAATGACCCCTCCTAAGTATGTACCGTAGCCTTACTCTGCGAGTAGTCTGTGCCAGAGTTTTCACTTGTTTCTCGCTCTTCTTCCCCCTTCATTGTAATAACATGCCACTCTATCCTTCCACTTACACATCCTCCCCACCCAAGACGTGGAGGATGTTAAGTTTGTCATCAACTACGACTACCCCAACTCCTCCGAGGACTACGTGCACAGGATCGGCCGCACGGCCCGCAGCACCAACAAGGGCACGGCCTACACCTTCTTCACCCCGGGGAACCTGCGGCAGGCCCGCGACCTGGTGCGGGTTCTGGAGGAGGCCCGGCAGGCCATAAACCCCAAGCTGCTGCAGCTGGTGGACTCTGGCcgtggaggaggaggggGTGGCAGGTCCCGTTACCGCACCGTTGGGTCCAACGCCAACAACCCCAACATGATGTACCAGGACGAGTGCGAGAGGCGCATGCGCACCGTGGGCGGGGGCAGCAAGGACAGCCGGGACGGGAGAGGTGGAGGGGGCGGCCGGGACGGGGACCggtcctcttcctcgtcctcgtaCAGGGACCGCAGCAACAGGGACAGCCGGAGCGGGGGCAGTTACGGGGCGGGGACAAACTCCACCACGTCTTTCGGAGGCATAGGAGACCAGTATCAGAGCTACAGCGGGACCGGGGGCAGCCAGTACAATTCGAGGGGCGGGCCGCCGGCCGGGGCCAGCGTGCCCGTGGGTAGCACCGGGGGGCAGGAGCAGTCGGTCCAGCAGCAGGGACAGTTCGGGAGCATGAGCGGCAGGCCCGGCCAGGCCCCCCCACCTCCAGGGGGTCCACAGCCCCTGATGGCGCAGCACTTcaaccagccccagccccagcccatAATGGGCTTCATAGGACAGGGCCCCTATCAGTTTGCgcctccacctcctccccctcctcccccccctcgAAAATAAAGGCAAGGGAATAAGAGGCGATCTCGGTAATTAAAGCCACACTTTTTAGTCATTAAGTTGTAGATGTGCTACCCATTATTTTCCAGGGTTTCATTAAGATAGAGATTTCCTGTTTGTTGGTATTCTTTGGCGGACTGGGGAGCAAAGAGCGGAGCGTGTTTTTTTTAGGTTGATGAGGTTTTATTCTTTATGCTTAAAGAAGCTGTCCTAGGTTTTGGTTAGTTTACGTAGGTTTGGAAGTTTTCAGTTGGAGCTCTTTCTCAAGGCCACAACGTTTCCCTCGCCTTGGCGTTGAAGGCATCGAAATGGCCACAACGCTCAACATTAGCAGTCAGCGAAATGTACGTAACGAGTCCAGCGCTCATTGCAAACGGATGAGTTTTGGCTCATTTGTAGTGTTCACAGAAATCTGTAAAGGGCTTAGGATTTTGTCAGTATGTTGAACtgtttagtttgtttctaaagCGTTCAATTGGCTGACATGCAAATCGGACTGAAACGGATGGAGGTTTTAGGGATGCATTTAAGTAATAGCATTTTGTCGTTTGGGAGTTGCTTTTCCACAGCAAATTCTCCCATTGCTTGGATTCAGCTGCCCTTTGACGGAATGAGAGATGTTAAATTGAAAATGTAACACCAAATGTAAAAATCTTTAGCTTGTCATGAAAAGGTACAATTTGGCCAAAGAAGTGAATACTTCTGTAAATCAAATATCCACCCAGTGATTCACTTTTATTTTAGACCTGTTCTTTTCCAGTTCCTACCACACAGATTTCATGCATTAAGTAAGTAGTGTCATCTGGCTCAATGTGATTCATGACGTGATGCATCTGTTCTTGTGTAATTTTAAACATCTTTGCTTTCAGATGTGTGGTACCCTTATAGCGTTTCCCCCATTTAAGCAATGTTATTACTCTACGCCTTTTCTCTCAGTAATATGTATACCTTTGTTATAGCTAATGTGCTTTACTTTTGCATTTGGGTCATGTAAAAGGTAGGTCTTTCACTTGTTATCCTTTCCATTTTCCTTCCTTGTGTGGGTGCATTGGGCAAACACACTAGTGGTACTCCCTTACCTATTCTTGGGGGGTGAGCACTTGTAAATGCCATACAGGTTTAAGTTCTTTCTGTTATGGGTACAGAGTTGGAAAATGTATCCAACGGATGATTGTTAATTGTGTATTTTAGCAACTCTTTGGGGGAATAAACCCTGAAAAGAACCCGTCAGTACAGGGGATGCTAGAATGAACAGTTGGATATTTTCCTCGTAATGTCTCCCATTTTTGCATTTGTGTAATTACAGCCGTGTTACTGCTTTCATTACACCCAGCATAGGCTTTGTTTTTTTGCATGTTCAAGCCAGCCTTACATATGCTAGTATGGGAGGTGAGACCACGTAGTTGTAATCAAATAAACTGGTGATTAATTCAGGCCCTCTCCTCCCAAAAGCCCCTGAGAGGATTCTGAATTTGCAACAATGAAAATGAATGACATACAGTAGATGAGCTTTGTGTAGCAGTTTTCATGTTGACTTTTTATACTGTGAGTTTGTTTTTCAGGATTTTGAATAAAGATTTGATCCGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF08423	Rad51	Rad51	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR010995	Homologous_superfamily	DNA repair Rad51/transcription factor NusA, alpha-helical	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR011940	Family	Meiotic recombination protein Dmc1	Interproscan
IPR013632	Domain	DNA recombination and repair protein Rad51-like, C-terminal	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR020587	Domain	DNA recombination and repair protein RecA, monomer-monomer interface	Interproscan
IPR020588	Domain	DNA recombination and repair protein RecA-like, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22942	RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000150	Molecular Function	DNA strand exchange activity	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0000730	Biological Process	DNA recombinase assembly	Interproscan
GO:0000794	Cellular Component	condensed nuclear chromosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006259	Biological Process	DNA metabolic process	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006312	Biological Process	mitotic recombination	Interproscan
GO:0007131	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042148	Biological Process	DNA strand invasion	Interproscan
GO:0070192	Biological Process	chromosome organization involved in meiotic cell cycle	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-