Gene detail

Detailed information of SKAU_T00119870 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00119870	LD41958P	CM056379.1	13224943	13230748	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00119870

CTTTAACTTGGCCCTAAATATAAATAGGGAAGTTTAAGGTCTTCCGCATCAATTAAATATAGTGGCTTGCAGAGATGTCCATCGTGATCTATCCGTGTCATTGTTGTTGATGGATGAGTTCCACGAGGTAGGCCGCAGCCTCAGAGATGCCTGTGTCCTTCTCCCCCAGCACCACTGCAGGAAGTGTGGCCAGGCTGTGTGCGGAAAGTGCTCTTCTAAGCGCTCCTCCATCCCGCTCATGGGGTTCGAGTTTGAGGTGCGAGTGTGTGACCTCTGCCACGACTCCATCACTGATGAGGACCGCGCTCCTACGGCAACCTTCCACGACAGCAAGCATGGCATCCTGCACATGCACTTTGAGCCCACCAGAGGCTGGCTGCTTACCTCTGGGACCGACAAGGTCATAAAGCTATGGGACATGACCCCAGTGGTGTCCTGACGAGCCCCGTTGCCACAGGCAACGCCGTGCAAGCCTCACACCGTTTGGGGGGCGGAGCCCCAGTGACCAACGCATCGCTTACTGCCATCCTGGGGGGAGGGAAGACGCAGGCCTGCCCGAGCCGCCCCCGAAGCCCTTCTGAGCTGCACCTCTGCTTTGGGTGTGCTTCCTCTCCTCCTCATTTTCCTTCCTGACCCCCCTCAGGATAATTTGTggaattttataaatttttttatctTTCTACCATTATGGAGGCATGAAACAAAATGATTCAATCTCCATGGTAACTCATTTGTCATGGGAAGGAGGCGGATGGGAGCGAATGGAGTCTTTTTACCCTCTGGTATCTCTCTGcctatgatctctctctctccccccccccccccccccccccccctctctctctgatgtCTCCCTCTGTGTGACATGTCACTCTTCACCCTTATGTTCTTTGGTAGATTCTTCCAGAATGGGCACCCTGTAACTGGTATCTGACTCTCCAGAAACTACTGTATGTAACTGATATGAGGAGTCATGAttagttggattttttttcagAATGGCAATCTACAGTTTAcgtaccctttttttttttcttcttctttaatCCATACTCGGTCTTGCTCTCCAAATGCTACTACACGTTGTGATTTGATGATAGAAGTCATATTGCAATAGTTTGCACAACCAGTACAACTTAACTTGTTTTTTGCTTAGTTCTTTAAATTCAAATGGACTCAAAGCGgcatttgaaaatgtgttttcaagTGCGTTATTTGCAGACATGTACATATCTTTATGACGGGGCATATTTGTTTTTGCCATTATTGTGGCCATAATATGGCTGGCAGCAGTGGGAGTAGTCGATGACAGAAATGTCTCCTTATTAAAAGCAAGGGAATGGGAAAAATtaagaaatatataaataatattaaaaccaagtattaatatatactgtatatcactgtaggGGCCAAATTATACACCTTACGTGGGTGGTTGTTCAAATGGGTTCCTTGAAGATAATCAActtcatataaataaataacaagatAATACATAAACTGTACCAGTCTCCATTTTGTTGGAACAGCTGGTGAATGGTGGGGCTGTAAAGTCAGGCCATGCCTCTGAACAGATATTCTAGTCATCACAAACAGAACATCTCTGTTCAGACAGTCTGCATGCTGGCTGCGCTGGACTGCCTTAATGCTGGCTTTGTGGAACGGGGAGCTTGGCTTGTTTAAGACGCGCGTCAGGACTAGTCTTTTCCTTCCTACACAAGCTGTTGTAATAAACATTTCATTTCTGTGAACTTGCAAGATTGTCATCAACAAACTCCCTGCCCAAAAATCCTCTGCCCTGCTGAAAAATGAGTCATAAAATTAGTAATAACATACTTCTTAAAATAAACATTGACTCAATGTTTCATGTGATGAAGAGAAAAtgtgtaaaaaagaaaagaaaaagtaaaacataaaatgtgttatgctttacatactgtatatgtatacgtATCAAGCTGGGATCAATTGCGTTTCAATTCAGCCAATTCAGGAATTTAACTGAAATTCAATCAATTCATTGAAAAATCTGCATGCAACATGCTTATgcaattttatgttttacctCAAATCGGCAACGACTTTCATGAAATCCACTCACTTTAACCAAGCATTACTGTATGAGCAGTGGCATTTGGGAAATAAAGTTTGTTGTTGCCAGTGTTGTGATGTCATATTGACATATTCTACCCAATCAGAAAGGCTTCAGGTAGTTGGGTTTGGCTTGGAAAAGGCGAGTGAGCAAAACAAGGAAAAGACTTTCACACACAGGTGTCTCAGCTGATTGGTTTAGAATTCCCGTGATGGCTAAAAGCACAAGTAATATTGTTGCATTGCTCCAAATTATACAGTGATATCAATAATTTGCCTCATATGATGAAGCTAAAGCTAGTTTAATGTTGCTTTGTTTGAGAAAACCAAGTCGTGTTCCATGTCGTTTTTCTGTTCAGTGTGTATGGTGCTTTACTAAAGACACTTGGTCACGTAGACATGGAAGTATGCTTCATTGTTGTGTGTAGTAGTGGTCAGCTGTAGTGGCAACTTTCTATGTATCCTTTTTGTCTATGCCCTACTGTTTGATCTCACAATGAACTGGCCTGAGCGATCAGGGATTTTATCATAGTCTGATAATACGCATAAATCCCTGTTGAATAAGGTAGGAAAGAAaatcactaaaaaaaaaacacattcctcAGACTAGCTCCTACCTTTACTCACCTGTGCAGGTGGAGTTCAATCTGGTTGGTTAGCACAGAGGGGCGTGCTCTCACTCCGTTGTTCACTGAAAGCCTCACAGAAACTCACCAATGGGCTGCCTGCCTCAGTCTTGTAACTGACAGATGTAGCGTGTGCGGGATCTGATATGCAGTCTGCCTCTCGCCCTCTACTGCGAATGAGCAACCGCCACCCCCCCCGAGTGCTGCCAGAGCCCCGAGCATTACTTATTCATGTTCCTCCTTCAATCAGACGCTCATGAGGAGGGTTTCAATCCCACAAAGGAGGGATCCAGTGAAAATACCGACTGTAAAGTGACACTGTCTCCTCTCGCGCTCGTGCCATCCCTGACATCCCTGAATTAATGATGTGCGTGTCGGGTGGAGGGTAGCTCTTTAAGATCCGTTAGCACTGGAATACACATCGATCCCAATTTTCCAACACCAATTATCTCAGCATTCCATTTTCCAAATGAAGCACATTTCCTGTTCCTGTGGTTGTGTACACACAGCGATAGATCGATGACAATGTTCATTTACCGTATACATTTTGGTGCATATTTAGTGAGGAGATGGTGACCGGGGCCAGTAGATGGTGTGTCGCCACCTTTTGCCTTGTCGTTGCACATTTTTGTCTTCCGCGACGGCGACAACAGCCTTTTGGAATATTGTGCTGAAATTGCTTGGAAGTCTGGTTCTGTATGTCAAAGTGCATTTGTGCTGCTAGTGTGCTTGGTTTTATTACTGTTTGACAGTTAGCATTTGATGGGAAGATACAGAAATTCTGTTTTGTACATAAGTAAAGAATTACGGGGCAAAATGTGCTTTTAATTTTCGCCTTAAAGTccagttttttgttattttggtttttatAGAATTggtttatttttatattgtttgtGTTTCCCAGGGatcttaaataaaaagtaattgtgCCCATGAGAGGTTTCTGGAGTCACTCAGGAGGTTGTCTCTGGATGACGGACAGCATCTGCACTTATTTCACCATACAAAGTCAAATAAACTTTTAAAGCTAAAACATAAATATACACAAGATTTTGATTGATTGGAAAACATAATTGATTGATCAGACTCAATATGGAACTTTCTTGAGCATAATGTAATATTTTATATGAGATACCTGGATGTAATTTCATATTAGTGGCAAACTCAGTCACCACTCTGGAAAGAGAAGGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000306	Domain	FYVE zinc finger	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455	Domain	Zinc finger, FYVE-related	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR042234	Family	WD repeat and FYVE domain-containing protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46189	LD41958P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001934	Biological Process	positive regulation of protein phosphorylation	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0045600	Biological Process	positive regulation of fat cell differentiation	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-