Gene detail

Detailed information of SKAU_T00117540 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00117540	SIGNAL-TRANSDUCING ADAPTOR PROTEIN-RELATED	CM056379.1	7345452	7377562	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00117540

atGGTGAGTGAAAAGGTGGGAGGAGCCGAGGGGACCAAACTCGATGAAGACTTCAGAGATTTGGAGAAAaaGGTGGATGTGACGAGTAAAGCTGTTGTGGATATCATCACTAAAACCTCAGAGTACCTGCAGCCCAACCCAGcgtCCCGAGCGAAGCTGTCCATGTTGAACACCATGTCTAAGATCCGGGGGCAGGTGAAGAGTCCGGGGTACCCCCAGGTCGAGGGGCTGCTGGGAGAATGTATGGCCAAGTACGGCCGCGAGCTGGGAGAGGACACCAACttcgGTGGCGCTCTTGTGGATGCAGGGGAGTCGATGAAGAGGATGGCAGAGGTGAAGGACTCTCTGGACATCGATGTCAAACAGAACTTCATTGACCCCCTGCAGGGACTGTGTGACAAGGACCTGAGAGAGATACAGcaccATCTAAAGAAGCTGGAGGGTAGGCGTCTGGACTACGACTATAAGAAGAAGCGGCAGGGGAAGATTCCGGATGAGGAGGTGCGGCAGGCCCTAGAGAAGTTCCACGAGTCCAAGGAGGTGACCGAGACCAGCATGTACAACCTGCTGGAGACTGATatcgAGCAGGTGAGCCAGCTGTCCTCGTTGGTGGAGTCACAGCTGCAGTATCACAGACAGGCCGTGCAGATCCTGGACGAACTGTCAGACAAGCTGAAGGAGAGGATGAGTGAGGCGCAGTCGCGCCCGCGTCGGGAGTACACCCCCAAACCGAAGCCTGTGTTTGAGTACTCTGAGCCCGAGCAGCCAAACGGAGGCTTCACACCTACAGCGGCCCCGCCCACCCGCTCAGCCCCGTCGGTGGACCAGCCCTGCTGCAAGGCGCTATACGACTTTGATCCGGAGAACGACGGTGAGCTGGGCTTCCGCGAGGGCGACATCATCACGCTGACCAATCAGATCGACGAGAACTGGTACGAGGGCACGCTGCACGGCCAATCAGGCTTCTTCCCGCTCAACTACGTGGAAGTGGTGAGCCTGGATTTTCAACATGGGGCCTTGAAGTTCTTCATGGCGGCTACGACAGCCACAAAACGAGCCGGGCGACCGCGGTCACAGCTGCCTTCCTGCTACCACGAGGGCTATCTCGAGAAGAGGGCGTCAAAGGAAAAGgTGTTTCGGAGGCTGTGGACAAGTATCTGTGGAAACGCGCTGTTTTTCTTCAACAGCCACAGAGACAGTGagtaTGTAGAGAAGCTGGAGCTCAGTGGTTTTGTCTCCCTGGTTGATGACGGGACCAGAGACCGGAACCTGGAGGCGGCGCGCTTCAGTCTGCGGATGAAGGACGGGGAGGTCAAACTCACGgctccAAGTCTGGAGTCTCGTGAGCTGTGGAAGGGATTCATCCATGCCGTGGTAGAGCTCTCTGTGCCCACCTCTCTCAATCTCCTCCCAGGACAGCTCCACTTgctggaggaggtggtggagaaggagaagaggagGCGAAAAACCTCCTGCCTCCCAGCAGCCCCCACCACCCCCTTGCACCTCCCCCTGCTGGGGGAAATCCCAGCGTGTTTCCAGCCCGTGTCCCGTAGAGAGGCTGAGGTGCTGCTGGAGAGGCACCCAGACTGTGGGAACCTGCTGCTGCGGCCGGGACGGGATGGCGCTTCGCTGGCCGTCACCACGCGCCAGGACCTCAACGGgtCAGTGTTCAGACATTATCGTGTATCccagagagaggaagggggataTGTCATCAATGTGGAAAACCCGatcCCGTGTGATACGCTTCATGATGAACCGTACGAGGAGAACATCGcCTTTGTGAAGTCCAACGATGAGAACGGAGAGAGGAGCCTACAGTGGGCCCCAAGCAGTCCCCTCCCAAGGGCCCCAGTCCTGCCTCCCAAACcagGGAAGAAGCCCCAGTCACCAATCAAACCCTCCCTTCCCCGAAGGACTGCCTCTGAAAGGCCATACAACAGTTCTCCAGGGGCTGAGAGGCGGACCTTCAAGCCGCTGCCCATGCCCCCGGAGGCGGAGCTTCAGTCGGGGGCACTCAGCGACAGGCTGAAGCGCCTCAACGTGACTGCACCACCACTGGCTCACAACATATCAGAAGAGCTCAAACTCAAACTGGAACAGAGACGAGCCAATAtggagtga

Transcript

SKAU_T00117540

GAGAGTGTTTCCTCCTTTGGAAAGTGTGCTGTAGACATGCTTATTACTTAGTGCAAATCATATAACCGAATAAAAAGatGGTGAGTGAAAAGGTGGGAGGAGCCGAGGGGACCAAACTCGATGAAGACTTCAGAGATTTGGAGAAAaaGGTGGATGTGACGAGTAAAGCTGTTGTGGATATCATCACTAAAACCTCAGAGTACCTGCAGCCCAACCCAGcgtCCCGAGCGAAGCTGTCCATGTTGAACACCATGTCTAAGATCCGGGGGCAGGTGAAGAGTCCGGGGTACCCCCAGGTCGAGGGGCTGCTGGGAGAATGTATGGCCAAGTACGGCCGCGAGCTGGGAGAGGACACCAACttcgGTGGCGCTCTTGTGGATGCAGGGGAGTCGATGAAGAGGATGGCAGAGGTGAAGGACTCTCTGGACATCGATGTCAAACAGAACTTCATTGACCCCCTGCAGGGACTGTGTGACAAGGACCTGAGAGAGATACAGcaccATCTAAAGAAGCTGGAGGGTAGGCGTCTGGACTACGACTATAAGAAGAAGCGGCAGGGGAAGATTCCGGATGAGGAGGTGCGGCAGGCCCTAGAGAAGTTCCACGAGTCCAAGGAGGTGACCGAGACCAGCATGTACAACCTGCTGGAGACTGATatcgAGCAGGTGAGCCAGCTGTCCTCGTTGGTGGAGTCACAGCTGCAGTATCACAGACAGGCCGTGCAGATCCTGGACGAACTGTCAGACAAGCTGAAGGAGAGGATGAGTGAGGCGCAGTCGCGCCCGCGTCGGGAGTACACCCCCAAACCGAAGCCTGTGTTTGAGTACTCTGAGCCCGAGCAGCCAAACGGAGGCTTCACACCTACAGCGGCCCCGCCCACCCGCTCAGCCCCGTCGGTGGACCAGCCCTGCTGCAAGGCGCTATACGACTTTGATCCGGAGAACGACGGTGAGCTGGGCTTCCGCGAGGGCGACATCATCACGCTGACCAATCAGATCGACGAGAACTGGTACGAGGGCACGCTGCACGGCCAATCAGGCTTCTTCCCGCTCAACTACGTGGAAGTGGTGAGCCTGGATTTTCAACATGGGGCCTTGAAGTTCTTCATGGCGGCTACGACAGCCACAAAACGAGCCGGGCGACCGCGGTCACAGCTGCCTTCCTGCTACCACGAGGGCTATCTCGAGAAGAGGGCGTCAAAGGAAAAGgTGTTTCGGAGGCTGTGGACAAGTATCTGTGGAAACGCGCTGTTTTTCTTCAACAGCCACAGAGACAGTGagtaTGTAGAGAAGCTGGAGCTCAGTGGTTTTGTCTCCCTGGTTGATGACGGGACCAGAGACCGGAACCTGGAGGCGGCGCGCTTCAGTCTGCGGATGAAGGACGGGGAGGTCAAACTCACGgctccAAGTCTGGAGTCTCGTGAGCTGTGGAAGGGATTCATCCATGCCGTGGTAGAGCTCTCTGTGCCCACCTCTCTCAATCTCCTCCCAGGACAGCTCCACTTgctggaggaggtggtggagaaggagaagaggagGCGAAAAACCTCCTGCCTCCCAGCAGCCCCCACCACCCCCTTGCACCTCCCCCTGCTGGGGGAAATCCCAGCGTGTTTCCAGCCCGTGTCCCGTAGAGAGGCTGAGGTGCTGCTGGAGAGGCACCCAGACTGTGGGAACCTGCTGCTGCGGCCGGGACGGGATGGCGCTTCGCTGGCCGTCACCACGCGCCAGGACCTCAACGGgtCAGTGTTCAGACATTATCGTGTATCccagagagaggaagggggataTGTCATCAATGTGGAAAACCCGatcCCGTGTGATACGCTTCATGATGAACCGTACGAGGAGAACATCGcCTTTGTGAAGTCCAACGATGAGAACGGAGAGAGGAGCCTACAGTGGGCCCCAAGCAGTCCCCTCCCAAGGGCCCCAGTCCTGCCTCCCAAACcagGGAAGAAGCCCCAGTCACCAATCAAACCCTCCCTTCCCCGAAGGACTGCCTCTGAAAGGCCATACAACAGTTCTCCAGGGGCTGAGAGGCGGACCTTCAAGCCGCTGCCCATGCCCCCGGAGGCGGAGCTTCAGTCGGGGGCACTCAGCGACAGGCTGAAGCGCCTCAACGTGACTGCACCACCACTGGCTCACAACATATCAGAAGAGCTCAAACTCAAACTGGAACAGAGACGAGCCAATAtggagtgacccccccccccatattatgAAGCTCCAGCCAATCGAGTAGAAAGGTCTGTTCCAGAAGTCGGCCAATCACAAGTGACCTTCTACCAGCTGTgttttcctgacttttttttcGTGAAGCTGCAGCACTCTGAGGACTGCCTTGTGTCTGGTGTACCTCACCAGCCTTCAGGGATGGACTGTACCATTCCAACTGATTATGGAGGGGGGGTTAATTTGTCCAAACTGACATTCTGAGAAATGATTGTGCGTGGTGGACTGACTTGTTCTCCCTGCCACTGGACACCCCCAGAACTCACATTTGCCGGGGAGCTGCCCTGTGGCCTGAGACTGCTGTTGGGCCTGATGTTGTAACTGGACCAGCCGCCATAGAATCAAGGGCAGAAGATTAACAAGCAATCGATCCGTACAAACGTTTTGCGCGTGGACCCCTGGCCTGATGGAGCCACCGCGCCGTTAAGTGATTGTCACGCTGCCGTGTAAGATGTGGCGTCCTCCATTGACGCGTCCATTTGTGTATTTGCTCTCTTGAGTGGTGAGGATTTGTTGCCGCATGTGGTCGTGTGATAAGAATATTACTCTGTGGTTTTTGGCCTAGACGGTACTGTACTTTATTCTTGGTTTCCCGTGACTCCCGAAGTGTCAGTTTGTATATATGtagatatgtatgtgtatgtgtgtcctgTAATGTGGATCATGTGGCCATGGCGAATGTGCTCTTCAATGGTGTACAGCTCAAGAGGAAATTAAAAGAATCGTTTTGCATGCTGAGGAC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF03114	BAR	BAR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980	Domain	SH2 domain	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR004148	Domain	BAR domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR035824	Domain	Endophilin-A, SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR039111	Family	Signal-transducing adaptor protein STAP1/STAP2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16186	SIGNAL-TRANSDUCING ADAPTOR PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0035591	Molecular Function	signaling adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-