Detailed information of SKAU_T00109900 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T00109900VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13CM056378.1113231356113313354-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Alpha-Helix|UBA

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00627UBAUBA/TS-N domainDomainInterproscan
PF06650VPS13_VABVacuolar-sorting associated protein 13, adaptor binding domainDomainInterproscan
PF12624Chorein_NVPS13-like, N-terminalDomainInterproscan
PF16908VPS13_ext_choreinVacuolar sorting-associated protein 13, extended-choreinRepeatInterproscan
PF16909VPS13_DH-likeVacuolar-sorting-associated 13 protein, DH-like domainFamilyInterproscan
PF16910VPS13_mid_rptVPS13, central RBG modulesRepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR009060Homologous_superfamilyUBA-like superfamilyInterproscan
IPR009543DomainVacuolar protein sorting-associated protein 13, VPS13 adaptor binding domainInterproscan
IPR015940DomainUbiquitin-associated domainInterproscan
IPR026847FamilyVacuolar protein sorting-associated protein 13Interproscan
IPR026854DomainVacuolar protein sorting-associated protein 13-like, N-terminal domainInterproscan
IPR031642DomainVPS13, middle RBG modulesInterproscan
IPR031645DomainVacuolar protein sorting-associated protein 13, DH-like domainInterproscan
IPR031646DomainVacuolar protein sorting-associated protein 13, extended choreinInterproscan
IPR041969DomainIntermembrane lipid transfer protein VPS13D, UBA domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006623Biological Processprotein targeting to vacuoleInterproscan
GO:0007005Biological Processmitochondrion organizationInterproscan
GO:0019898Cellular Componentextrinsic component of membraneInterproscan
GO:0045053Biological Processprotein retention in Golgi apparatusInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

TOP