Detailed information of SKAU_T00109650 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T00109650E3 UBIQUITIN-PROTEIN LIGASE UBR4CM056378.1112299207112460224+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|UBR-box

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00038FilamentIntermediate filament proteinCoiled-coilInterproscan
PF02207zf-UBRPutative zinc finger in N-recognin (UBR box)FamilyInterproscan
PF07774EMC1_CER membrane protein complex subunit 1, C-terminalDomainInterproscan
PF13764E3_UbLigase_R4E3 ubiquitin-protein ligase UBR4FamilyInterproscan
PF19423E3_UBR4_NE3 ubiquitin-protein ligase UBR4 N-terminalDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR003126DomainZinc finger, UBR-typeInterproscan
IPR011047Homologous_superfamilyQuinoprotein alcohol dehydrogenase-like superfamilyInterproscan
IPR011678DomainER membrane protein complex subunit 1, C-terminalInterproscan
IPR025704DomainE3 ubiquitin ligase UBR4, C-terminalInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR039008DomainIntermediate filament, rod domainInterproscan
IPR045189FamilyE3 ubiquitin ligase UBR4-likeInterproscan
IPR045841DomainE3 ubiquitin-protein ligase UBR4, N-terminalInterproscan
IPR047509DomainE3 ubiquitin-protein ligase UBR4-like, UBR-boxInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR21725E3 UBIQUITIN-PROTEIN LIGASE UBR4Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0005813Cellular ComponentcentrosomeInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

TOP