Detailed information of SKAU_T00102300 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T00102300FANCONI ANEMIA GROUP E PROTEINCM056378.19087019290923535+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Transcription Factors Familyzf-CCCH
Transcription Factors FamilyESR-like
Transcription Factors FamilyNGFIB-like
Transcription Factors FamilyRXR-like
Transcription Factors FamilySF-like
Transcription Factors FamilyTHR-like
Transcription Factors FamilyGCNF-like

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00104Hormone_recepLigand-binding domain of nuclear hormone receptorDomainInterproscan
PF00105zf-C4Zinc finger, C4 type (two domains)DomainInterproscan
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan
PF11510FA_FANCEFanconi Anaemia group E protein FANCERepeatInterproscan
PF18044zf-CCCH_4CCCH-type zinc fingerDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000536DomainNuclear hormone receptor, ligand-binding domainInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR001628DomainZinc finger, nuclear hormone receptor-typeInterproscan
IPR001723FamilyNuclear hormone receptorInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR003074FamilyPeroxisome proliferator-activated receptorInterproscan
IPR003075FamilyPeroxisome proliferator-activated receptor, betaInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR013088Homologous_superfamilyZinc finger, NHR/GATA-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR021025DomainFanconi Anaemia group E protein, C-terminalInterproscan
IPR035500Homologous_superfamilyNuclear hormone receptor-like domain superfamilyInterproscan
IPR039685FamilyFanconi anemia group E proteinInterproscan
IPR041367DomainE3 ligase, CCCH-type zinc fingerInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR32094FANCONI ANEMIA GROUP E PROTEINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0004879Molecular Functionnuclear receptor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0036297Biological Processinterstrand cross-link repairInterproscan
GO:0043240Cellular ComponentFanconi anaemia nuclear complexInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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