Gene detail

Detailed information of SKAU_T00100110 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00100110	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	CM056378.1	84295228	84323320	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00100110

ATGAGCACCATCCTGGCAGGCATCCCTGGTGTGGCAGTGTTCCTCGACGATATTGTTGTCCACGCTCCGGACCTTGAGACACACAACAAGCGCCTCCATGGGGTGGCCCAGGCCCTTCTGGACAACAACCTGACACTGAATGGGGAGAAATGCTGCCTTGCAGCGCCAGCTATCGACTTTGTGGGTCTCAGGAAGCTGGAGGCCTTTTTTGGATTTCTCATCACAATAATGGGCATCACCTTTGGATACGAGTACGTGACTGTGAAGCCGGACCAGGGGAAGCTGCTGACGGGTATGTTCGTACCGTACTGCCAGGGCTGCGGCCCCGTGCAGATGCAGCAGGCCGTGGGCATCGTGGGCGCCGTCATCATGCCACACAACATCTACCTGCACTCTGCGCTTGTCAAGTCCCGGGAGATCGACCGCACCAGCAAGGAGAAGGTGAAGGAGGCCAACAAGTACTTCTTCATCGAGTCGACCATTGCTCTGTTCATCTCCTTCCTCATCAACGTCTTTGTGGTGGCCGTGTTCGCCGAGGCCTTCTTCGGACGCAGGAACGCTGAAGTGAATGAAATCTGTAACCAGACGGGCAGCCTTCACATGAACCTGTTCCCCCAAAACAATGAGACGCTGCAGGTGGACATTTACAAAGGGGGCTTGGTGCTGGGCTGTTTTTTCGGACCGGCGGCGCTGTACATCTGGGCGGTGGGGATCCTGGCTGCCGGACAGAGCTCTACCATGACAGGAACGTATTCGGGGCAGTTTGTAATGGAGGGTTTCCTGAATCTGCGCTGGTCCCGCTTCGCTAGAGTGCTGCTGACCCGCTCCATCGCTATCACCCCTACCCTGCTGGTGGCCATCTTTCAGGACGTACAACACCTGACCGGGATGAATGACTTCCTCAATGTGCTGCAGAGCATGCAGttgCCCTTTGCTTTGATCCCGATCCTGACATTTACCAGCCTACCCTCCATCATGAGTGAATTTGCCAATGGGCTagTGTGGAAGATTGGTGGTGGCGTGGTTATCCTGGTAGTCTGTGCCATAAATATGTACTTTGTGGTGGTGTATGTGACCACGCTGGACAGCGCATGGCTGTACGTGCTGGCTGCCTTCCTTTGCATCGCCTACCTGGGCTTCGTGGGTTACCTGgcctGGCTGTGTCTGATTGCCCTGGGGGTTTCCTGTGTGGACATTGGTGGCAGGGTGTGTTGGAGTCTGATGGGACACACGGACACGTACCTGCTGAACGACATTGATGGCAATGGGCCAGCGGAAAGGTAGAAAGAAGTTTGGGGCATAcaaggagagaaggaaagaagagGAATAGATGAGAAGAAAGCGCACCATCTTCCTGTTCAGTATACCTTTGTCAGCAGCCTTATACAGCCCCTCTGTACCTTTGTGGAGATAttactgtagagctgaaaccaggctggctcattatactcctttcccactgtagagctgaaaccaggGTGGCTCATAataccccttttccactgtagagctggaaccaggctggctcatgatacccctttcccactgtagagctgaaaccaggctggctcattataccccttttctactgtagagctggaaccaggctgcctcataatacccctttcccactgtagagctggaaccagactggctcattatacccctttcccactgtagagctggaaccaggctgcctcattatacccctttcccactgtagagctggaaccaggctggctcattataccccttttccactgtagagctggaaccaggctggctcattatacccctttcccactgtagagctggaaccaggctggctcataatacccccttttccatgtagagctggaaccaggctggctcattatacccctttcccactgagAGCTGGAACCAAGATGGCTCATAataccccttttccactgtagagctggaaccaagatggctcattataccccttttccACTATTAGCAGCCTTCAGAACCTCTAGCTCCTCACGCCTTTCCTTTACAGTCCTTCAGAGAAGGTCAAATGAAACTAGCTGGGAATTCAGTTACCCTGATGAGTCCTGGGAATcccaaaaatgtatatttttttaagtgtTTACCTTTTTAAATAAGTAGCAAACTATATTTTTACTGTAACAAATCTAAATTTTCTTAAGGTTACCTGGAAGACTGAAAGGGATATTTGGTTCCACAGATTATAGAGTTTGTTGCTCTAAAAACTTCCTCACATCTGTATTACTGTAACTACCTTACAAGGACATGACAAACATGCTCTTgcatttttattgtgtttttattgGTTCACTACTGAACAGGGACTTAGGGAATCTATTTTCCACTGGTCAAGTGTACCGTACTGGACCCGTACTGGTACCGTGCGGTACGTTTTTTCAATTACCGTTTGAGGAGAGTTCGGTACGGTCGCGGTACGCCTAAGACGTGCTGGTTAGGTGCCCTAACATATGTGGTACTGGTCCACTTTCAAAAGCGGTCCGATGGGTGTCGTCATTACgccagtgcacacacacacaatggaaaTTAACCGCCATTTTTAAATCCCCGCTAGCTCACTGATAACTTGTTACACTGCAAAACATTCAACAGAAAGATATAAGCCAGGACAAACCAGGAAAAAAAGACACTAACTCCGGGTCTGTCATGTTTGTTGTTGATGTTAGTGACGCTCACTGGTGACCATGGTAGTAACATTGTTGCCATAGCTACATCCAAGCGTTGCTCTCTTACGCAAAGGAGACTACAGCTACTGACCTTTTAAGTGGAAAATGAAAGGGTACTGATTCTGTACTGTACCGCGGCCGTTTAATGTGGCCCAGTAAGGTACACTTGACCAGTGGAAAAGAGATATTAGTGACAGTCCTTATGCAGTGTTATAATGCATACCGTACCAGTATGTGATAATTATCTGCTGCTCTACACTGCCCCGTGTGGTGGGGCTTGGACATGACAGCGCAGGAGCTGAAAGCAAGAAGTGTGACAGCTGATGTAGTCATGAATCATGAACTCACTGGACTGACTATCACGTAGAGTATAGACTATATTGCGATGGAAGGTCTTATCCTGCTGTTATTTGTACATTTCAAACCCCTGCAGTAGGGTCAAAACCTTTGCATTTGTGTGGCCTACTTCCCTGACTGAATGATTTAATCACTTTGAGGAATTTGGTCTCATATGGGAGGCAACATAATTGCCCATAGTGGATCAGTTGAAGTTGTTCCTACTTCAACATCAATGGATTTAGGTCCTGCAGGCAGAGGTGCAGCGCTGTCCGTAGGCTTCACACATTGCACATCCAGGCCATTTTTTACTCACTAAACATGCCATAATGCCATTTTGGCTCTAGTCACACTCTGCTCTTTTTCCgtctgtgtgtggatgggccccatggtgtggtatctgttaaggcactgttctagtgtgtggatggccccacggtctggtatctgttaaagcactgttctagtgtgtggatgggccccatggtctggtatctgttaaagcactgttctagtgtgtggatgggccccatggtgtggtatctgttaaagcgctgttctagtgtgtggatgggccccatggtgtggtatctgttaaagcgctgttctagtgtgtggatgggccccatggtgtggtatctgttaaagcgctgttctagtgtgtggatgggccccatggtctggtatctgttaagggctgttccagtgtgtggatggcccccatggtctggtatctgttaaggcgctgttccagtgtgtggatggcccccatggtgtggtatctgttaaagcactgttctactGTGTGGAATTAAAAGCTTACAGAGAAAAGGGAGATCTacttgtggggggtgggggggctgcttTCATTTACGACCTCTTAAATTTTCTATTAAAATATCTTgtcatatatttttatttaacatggtttgggtcaaattgaccccttttaaacttttaataaaACAGGAATGACACGTTTGATAGATTtatttcataaccagtgactaaaccaCTGCaaatttggtttttgttttttgtttctatttgttgttcatctATATTTGCTTTATGTCTTTTTGCAATATGGtttctttttatattttaatataaagaTCAAAAATTGAGaataattgagaatgtcagttTAAAACAATAAATACCAATAATCTAATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01566	Nramp	Natural resistance-associated macrophage protein-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001046	Family	NRAMP family	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11706	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005381	Molecular Function	iron ion transmembrane transporter activity	Interproscan
GO:0005384	Molecular Function	manganese ion transmembrane transporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0015086	Molecular Function	cadmium ion transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030001	Biological Process	metal ion transport	Interproscan
GO:0046873	Molecular Function	metal ion transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-