Detailed information of SKAU_T00096810 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T00096810DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERCM056378.17201887472086303-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02931Neur_chan_LBDNeurotransmitter-gated ion-channel ligand binding domainFamilyInterproscan
PF02932Neur_chan_membNeurotransmitter-gated ion-channel transmembrane regionFamilyInterproscan
PF06733DEAD_2DEAD_2FamilyInterproscan
PF13307Helicase_C_2Helicase C-terminal domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR002394FamilyNicotinic acetylcholine receptorInterproscan
IPR006029DomainNeurotransmitter-gated ion-channel transmembrane domainInterproscan
IPR006201FamilyNeurotransmitter-gated ion-channelInterproscan
IPR006202DomainNeurotransmitter-gated ion-channel ligand-binding domainInterproscan
IPR006554DomainHelicase-like, DEXD box c2 typeInterproscan
IPR006555DomainATP-dependent helicase, C-terminalInterproscan
IPR010614DomainRAD3-like helicase, DEADInterproscan
IPR013020FamilyATP-dependent helicase Rad3/Chl1-likeInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR014013DomainHelicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typeInterproscan
IPR018000Conserved_siteNeurotransmitter-gated ion-channel, conserved siteInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR030845FamilyRegulator of telomere elongation helicase 1Interproscan
IPR036719Homologous_superfamilyNeurotransmitter-gated ion-channel transmembrane domain superfamilyInterproscan
IPR036734Homologous_superfamilyNeurotransmitter-gated ion-channel ligand-binding domain superfamilyInterproscan
IPR038050Homologous_superfamilyNeuronal acetylcholine receptorInterproscan
IPR045028FamilyHelicase superfamily 1/2, DinG/Rad3-likeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000723Biological Processtelomere maintenanceInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0005230Molecular Functionextracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0010569Biological Processregulation of double-strand break repair via homologous recombinationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016818Molecular Functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesInterproscan
GO:0022848Molecular Functionacetylcholine-gated monoatomic cation-selective channel activityInterproscan
GO:0032508Biological ProcessDNA duplex unwindingInterproscan
GO:0034220Biological Processmonoatomic ion transmembrane transportInterproscan
GO:0045211Cellular Componentpostsynaptic membraneInterproscan
GO:0045910Biological Processnegative regulation of DNA recombinationInterproscan
GO:0070182Molecular FunctionDNA polymerase bindingInterproscan
GO:0090657Biological Processtelomeric loop disassemblyInterproscan
GO:1904430Biological Processnegative regulation of t-circle formationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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