Gene detail

Detailed information of SKAU_T00095780 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00095780	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	CM056378.1	66343279	66354938	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00095780

ATGGCTCCTTCAGAATCCCAGCTGCTGATCTGGAAACTGCAGAAGAGATTGCCAAATTTGAATTTCAATCAACTACAGAGTGTGGCACGTGAAATCGGTAAAGAACAAGTGGAAAAGACAGTAGATGCATCCACATTGACTGAACCTGAACTGTTTGATGTAATTGTCGACTTCATAAGGAGTGAGGAGCTCAAGAAGCTGGAAGATGAAGGCATGTCTTGTCtgatgcttcttcatgatctgaTCGAGGACTTGTTGACTGCCACGAACACTGCTCACACCGGGTCGGGAGACGAAGATGGTTTCCAGCGTGATAAATCTTCAACCACAACTAAATCGACTAATGGCAGCGATGTTGACGAGGCACCATCACCTCCAGAAACGGTCGTCCCAACCAAGACTACTACTCCAGTCAGAGACTCTGTGAGAGGCGGGACATCGAGCTGTCGGCTGCCTGAAGAGACAGTGGTCGGGAAACGGAGTGCAGTCACTGGAGAGGGGCGGCCGGTGACTGAGAGAACTGCAACGTCCCCAGTAAAAGTCAACTCTATTCAAATGGAGAAACCCGTAACAGTGAATGCTCAGcctaaaacaaggaaaaaacgTGTGGCACAACTCATTGGCAAAAGATGCCTGGTTTCCTGTGCCATCAACAGGGTTCCAGTGCAGATGATCTTTGACTCAGGAGCCCAGGTAACAATCGTTGGGAGAGACTGGGTAGGGAAGGAGTTACCCAATGTCAAGATCCAACCCCTTGAGACTTTGCTCGCTGACTTAGAGGTCACTGCAGCTAATGGTACCGAGGTGCCATTTGATGGCTGGATAGATGTAACACTAGAGATATACAGGCCAGGGAAGATGAATGCCGACGCGGACACACTGTCACGTTATCCCATCAAGTTCCAGGAGCACATCGGCGAGTACACAGAAACAGTGCCCACAGATGTAGTGACAGCTATCTGGCAGGGAGACGAAGTGGTGGAAAAAGGGGATGTGCCATGGGCCGCAGCATTGGTCCTCACCTCAACACCTGATGACTCACCATCTAGTACTGTACCTGTTTTCACTCCAGAGGACATCCGAAATGCACAAAAAAATGATTCTTCGATCAACGAGGTCATAACACTGAAAAAGAGAGGATGGATCCCAAACGACAAGGATAAAAGACAAATGTCACGCGAGACCAGGAGACTAGTACATGAATGGACTAAACTAAAATTAGACGAGGGAATTCTGTACAGATATGCTGCCCAGAGGAAGCAGCTGGTTCTCCCTACCGAACTGAAATCAATGGTGCTTAAGAATTTGCATGATGATATGGGACATGTTGGTGCTGACAAAGTAATTTGCCTGGCAAGAGAGAGATTCTTTTGGCCTTTTATGCAGAAGGAAATAGAGGATTACGTGATTAGAAGGTGCGCTTGCATTAAGCAGAAGCGGCCTTGTGTCCCGAACAAAGCACCCATGGGCTCAATAACTTCCAGTGCTCCATTCGAGTTTGTCTCAGTCGATTACCTCCACCTTGAGCGAAGCAAAGGAGGGTATGAATACCTACTTGTCTTGGTTGATCATTTTACCCGCTTCGCCCAAGCGTACCCCACCAAGAATAAGTCAGGGAAGACAGCGGCAGAGAAAATATTCCAGGATTTCATCCCCAGGAATCTTGTCAACACCTTCAACCTGAGCTGGATAAAGAAGAGAGACCTGAGGAAGGCACAGACTGAAGCCAAACTCCCCCAACACAGTCTAGTACTGGATGTTGCCACACGATGGGGTAGCAAGCAAAAAATGATAGAGAGGGTGCTGGAGCAACTCCCAGCCATAAGACGTGTCTTGGTTGAAGATCGAAAACATGGCCACCTCAACCCAACCTGGCAGGATGTTTCTGTGTTGGAATCCATTAATGCAGCAATGAAGCCAGTGGCTGATTTCACGGATGTTCTCTCGGGGGAAAAATACGTCACTGTGTCCTCAGTAAAGCCTGTGTTGGAACTTATTAAAGGTGAACTTTTATCACCAGACCCCAGTGACACTACACTGACAGCAAAGATAAAGGACAACATGTGCAGGGTATTGATGCAGAAATACAGCCCACCTGGAATCCAAGATCTCCTGAGAAAGGCCACCATCTTGGATCCGAGGTATCGTGGTAGCATGGAGGATGCAGAGGTCTTGGATGATGCCAAACATCAGCTCTTGCAagagctactaaacatgaaaGAGGAAGAAGGAAGTGGAGGAAGTGCCAGTGGTGAGAGCTGCAGTAAAACTGCAGGGGGAAATGATGGATCTGAACCTCCAGCACCCAAGAAGAAGAAGCTGAGTGACCTTCTCCAGAACAGAAGAGCCCAACTCACAAGTTGTCAGACCCAGGCTGGATCGGATTCGGTACCAAAAAGAGTGCAGGCTGATGCAGAGCTGACCAAGTTCCTCCGGGAAGAAGCACTTGATACAGCATCTGATCCCTTGATGTGGTGGCGTGATAATCATAGGAGATTTCCTTTAATAGCCAAGTTAGCACAAAAATACATGTGCATTTGTGCAACAAGCACTAGCTCAGAGAGAATGTTCAGCACAGCAGGCAACATTGTTACCCCAGACAGATCCTGCCTTAAGCCCCACAAGGTAAACATGTTGGTGTTCCTTGCTCGGAATCTGCCTTAA

Transcript

SKAU_T00095780

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR052035	Family	Zinc finger BED domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46481	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-