Gene detail

Detailed information of SKAU_T00092650 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00092650	RIBOSOME BIOGENESIS PROTEIN	CM056378.1	50485274	50541931	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00092650

atggacgcgtacatggccgcgtacatggacgcgtgcatggccgcgtacatggacgcATTCACAGAGGCAGACGCTGTGGTCATGGGGGATGTGACATATGGAGCATGCTGTGTGGATGACTTCACCGCCCGTGCCCTGGGGGCCGACTTCATGGTGCACTATGGCCACAGCTGCCTGATCCCTATCGACTCCACTGCAGGCATAAAGATGCTCTATGTGTTCGTGGATATCCAGTTGGACACAGCTCACTTCCTGGACACGGTGCAGTACAACTTCCCCCCTGGACAGTCCCTGGCTCTCGTCAGCACCATTCAGTTTGTGGCAGCATTGCAGTCTGTGAGTATTGCCATGAAGCAGACATATGATGTGCTGGTGCCTCAGTGTCGCCCCCTGTCTCCTGGAGAGATACTGGGGTGCACCTCACCTCGCCTGGAAAGACCCGTCAATGCCCTCATTTACCTGGGAGATGGGAGGTTTCACCTGGAATCCATAATGATTGCCAATCCAGACGTTCCTGCCTACAGGTATGACCCCTACAGTAAAGTCTTCTCACGAGAGTACTATGACCACAAAGCCATGCGGGAGACCCGACAGAAGGCCATTGAGCAAGCTCGCTCAGGCCAGAGATGGGGCCTCATTCTGGGCACGCTCGGGCGGCAAGGCAGCCCCAAAGTCTTGGAGccctccttatttcggCACCTGGAGTCCAAGCTGGAGTCTCTTGGCAAGACTTACAACAGAGTAATGCTGTCTGAGATCTTCCCCAGCAAACTAGATCTGCTACCAGATGTTGATGTatccgagtatggccagtgccttgaggaagtggcaattggcggctgctcccggggtggggagaGGGACTCGGAGAGCATTgttgcacataagacagccctgggcgagttggaatcacggttaggagctcgaggaGCTGCAGTGGCACTCCAGCAGGTTGAGTGGCAGGAGGTGTATCCAATGGATTACTACGCCAATCAGAGCTTGGGACCTTGGGCTGTCAATCACCGTGATAAccaaccgcctcgccctacccaCAGACAGGCCAAGcccaaccagaaagtgagcttcaaaacgaaagcccagtcttggccccttggtgtccTCAACccggcaacccgcgtgagcttcgagtctggggaggagggggcgggcggagacaactctctccaatattGTCGTGTATCAGTGATGGGTCTCACTAAGAAGCAGAGGAGGGATCAGAAGAAGATTGACAGGCGGCACAAAGCCGGTCAGCTGCGGCGCAACAAGAGAGATTTGGTGCTGACACAGAAGCGCAGTCTTGGCAGCAGGGATGGGCCCCCCCACCTGGTGGCGGTGGTGGCCCTGCACGACGGAGTCGACACAGAAGCAGTGACCCGGCTGCTCCGGGGGGAACGAGCAGGGGGCCTCGTGCAGGAGAAAGCCGGGGTGACCGGGGTCCCAGACAGCTTCGGCCTGGTTATTCCCAGATTTAAACAGAGGTTCATCTTTGTCAACCCTGGCAGAGTCGACCTTCATTCCCTGTTGGACCTGGCCAAGGTGGCTGATAGCCTGTTGTTTGTGCTGGACTGCACAGTTGGGTGGGACAGCTATGGAGATTACTGCCTGTCCTGCCTCTTTGCCCAGGGGTTACCCAGCCATGTACTGGTGTGCCAGGGATTGTCGGCACTGGCAGTGAAAAAGCAGCTGGAGTGTAAGCGGGCGCTTCAGCGGGTGGCCGAGACGCGCTTTCCTGGGGCGCGGCTCTGTCCTCTGGACACGGAGGACGAGGCCACCCTGCTGCTCAGACACCTGGGGGCGCAGAAACAGAAGAAACTGGGGTTCCGATCCCGCCGTCCACACCTGTTGGCCCAGCACGCATCCTACACCCCTCATCCCTCCGAGGGCGCCAAGGGAACAGGGACCCTGTGCGTCTCTGGCTACGTGCGGGGGCGCCCCCTGCAGGTTAACAGGCTGGTGCACATTGTCGGACATGGGGACTTTCAGCTCGCTCGGGTTGATGCCCCCCCTGACCCCCTACCCCTCATCTTTTCGACCCAAACCAAGCACGAGAAAGGTGAAGTGGAGATGCAGcttcctacagcagtgcgatctgccctggctaacatGCCCCTTAAAGATTACCGAGCTTTGGCTAgggaagctgacaagtttttttccgccggcCGGCAGAGCAgcggggccgccctgggtcccgcccacaatgactccacactgccagtggacgcagtggccattaccggcactacagctacaacccaacagcaaggcgttgggaaacgccagggccggcgctcactagctgccatgagcgtcggccctaaggtgtccacccccctcctcggcgcggattttctctgcgctaacagcctgttgatggacgttaagaaccggcggctcgtcaacgctgagacatttacctcgctcccccttactgagcccaccttttcttctgcctccactaagcacggggccctgcaggagttcctgggcatgGGCATTCCCCCCAAGAAGGCTatcgattggtctaaggagatggacagggctttctctgccacgaaaggggctctggccaacgcacagcgccagctcgctttcatctccgagttcactacggacatccggcatgttgcgggcaaagacaaccgcgtagccgactgcctctcccgggccatcgtcggcgccctgcaggacatcgCGTTCGACGACgccggcaacaccctactttgcgttttgaccacgtgcacgtggacctggactgcccctaaggaggacctacagtgctcgtctgctgagctggtttatggtcagcctctgcggcgaaccgccctcctggacagcgccagggcgtttgcaccagtgcctacatcacagcacgttctgatgaattctggggggacggatgtggcggctacctctgggacatacatatataattcacctcctactGACGGGGGTCAGGATGTGAATGGTGCCGTAGTCAGGGTTCTGATGGATGCTGACCCCTCTCTCAGGGAGAGCCTGCAGACAGAGGCTGAAGTTGACCCTATGGATGGAGAACAGACCTGGCCCACTGACTCAGAACTGCTGGAGGCTGAAGAGGCCAGGAAGAATAAGAAGGTAATGAAGGTGCCCAAGGGGACGTCGAGTTATCAGGCTGCCTGGATCCTGGACGATGGAGAGGAGAATGGCGaaagtgaggatgatgatgatgacgacgacgacGAAGAGGATAATGATGGCACAATGATGGAGGGGATGGAAGGAGAGGAAGACAGTGCTTCTCAGGATGCAGGGTCTGGTTGTGCTTCTGACTCGGAGGAAGAgatagaggaagaggaggaaGctgaggagggggaggagctgaGACGCTACCGAGAAGCACGCGCCAACGACCTGTTCCCTGATGAAGTGGACACACCTATAGACATGCCTGCCAGGATCAGAGTTTCCGTTCCTCACCGTGGGACCCCCCTGGAGAACCTCCCCCCCGACTACTCCCGCATCTTCCAGTTCCAGAACTTCGAGCACAGTCGGCGACGAGTCCTGGCCGAGGCCTCCCAGGAAGAAGAGGGGGCGATGGTGGGCTGGTATGTGACTCTGCACATTGAGGACGTCCCACCCTCCGTGATGGAGAGTTTTCGGACTGGAAAGCCGCTGGTCCTAGTCTCCCTGCTGCCCTATGAACAGAAGATGTCCGTGATGCACATGCTGGTCCGGCGGCACCCAGCCAACACTGAGCCCATCAAGTCCAAACAGGAGCTGGTGTTCCAGTGTGGATTCCGCCGATTTCGGGCCTGCCCCATATTCTCCCAGCACACCTCAGctgataAACACAAAATGGAGCGCTTCCTGCCAGCTGGAAACCCCACAGTGGTGTCAGTGTACGCCCCCATTACCTTCCCCACAGCTGGGGGTGCTCCTCTTCAAACAGAGCCCCGAAGgagaggagtggtagtcggggaggtggggagtgaagaatattgggacacaccccGCACGCAGAACCTGGTGGCCACAGGCTGCCTGCTGGGCTGTAACCCTCAGCGTGTGATGCTGAAGAGGATTGTGTTGAGTGGACACCCGTTCAAGATCAACCGCCACTCTGCAGTGGTCAGATACATGTTCTTCACCAGGGTCGCGTTCTCCCTGTGCCGTCTGTCATTTGGGTACAGCCTGAATCTGACTGTatgtctccccctctcccctccagaGGACATTCTCTGGTTCAAACCCGTGGAGCTGCGCACCAAGTGGGGGAGGAAGGGCCACATCAAAGAGGCTCTGGgTACACATGGTCACATGAAGTGTGTATTTGAAAATCAGCTTGGCTCTCAGGACACCGTGTTGATGAACCTGTATAAGAGAGTCTTTCCCCGCTGGACGTATGATCCCTACGTACCCCTGCCCTCTGGAGAGCAAGGGGATGAGAACGAGGACAAGGACAAGTttgtaaggccagatcctgacaccttatcagggcgccggccaggcagcaggcctctgatcctacatcggagcctgtgtttgctgtccggcttcctgtccgttgccgcttgcccctccctccttaccaccgctgccagctgctcccgccgccatcggcacccggttccccaccatcactgccgccacatctggactCCCTATGCCCGCATACCGCTtctccaggcaatggaggaggcatgtgcgGACATAGACGCTGCCTCTGTCCAAGGTACCTGGTCAAACAGAGGAGCATCAAGTCAAATACCCTACAGCcccaaggagaggagaacccCACAGCCATCCGTATCCAAGGACGAGGTGAACCCCACAGCTATCGGTACCCAAGGAGAAGAGAACCCCACAGCCATCGgagaggagaacccCACAGCCATCGGTATCCAAGGAGAGGAGAACCCCACAGCCATCGGTATCAAAGGATGGAAGAACCACACAGCCATCGGTATCCAAGGAGAGGAGAACCCCACAGCCATTGATACCCAAGGAGAGAACCCCACAGCCATTGatacccaaggagaggagaacccCACAGCTATTGGTACCCAAGGTGAGGAAAACCTCACAGCCATcggtacccaaggagaggagaacccCACAACCATcggtacccaaggagaggagaagcCCACAGCCATTGGTATCCAAGGACGAGGATGGAAGAGCCCCACAGCCATcggtacccaaggagaggagaaccTCACAGTCATCGGTATCCAAGGATGGAAAAACCCCACAGCCATCGGTATCCAAGGAGAGAACCCCACAGCCATTGATACCCAAGGAGAGAACCCCACAGCTATCGGTATTCAAGTAAATGAGAACCTCACAGCCATCGGAGAGAACCCCACAGCCATCagtacccaaggagaggagaaacCCACAGCCATCGGTACCCAAGGTGAGGAGAACCCCACAGCCATcggtacccaaggagaggagaacccCACAGCCATcggtacccaaggagaggagaacccCACAGCCATcggtacccaaggagaggagaacccCACAGCCATTGGTATCCAAGGACGAGGAGAGAACCCCACAGCCATCGGTATCCAAGGAGAGGAGAAGCCCACAGCCACCGGTCTTGGCTGTGGAGCGGGCAATTTGCCGGGACAGGAAGCGCTCTCTAGCCGAGCTGACCGTTTGATCGCTGCTGCGCTTGGCAAACTTGCTAGGCTCCGAGGCAGGCGGCGACGCTCCGGGGGATGTCCGTGTGCCGTCAGCGGCTGGCTCCCTGTACAGATGCACAGACAGACGGTGATGGTTAGACTCCTGGAAGGTAGCAGCAGTGACACTGACTGGGATGAACTGGTAAAAATGGCCAATGAGATGGTGGAGGAGCCCTGTGCCGATTGCCTCACCCTCCGCGGCCGCCTCTCGCTTcagcctctcctcctcttcctgccTCTCCAGAAGCTTCTGCCTGCCCTCTCCGGGCCCCTCCGCTCTACCAGCCCCTCTCTGGGCCCCTCCGCTCTACCAGCCACTCTCTGGGCCCCTCCGCTCTACCAGCCCCTCTCTGGGCCCCTCCGCTCTACCAGCCCCTCTCTGGACCCTTCCACTCTACCAGACACTCTCTGGGCCCCTCCGCTCTACCAGCCACTCACTGGGCCCCTCTGCTCTACCATTCCCTCTCTGGTGCTCAGCAGCCTCTTGCCgctctcctccttcttcttctggaTGTCGTCATACACGCTGTCGTACTCGTACACGGTGCTGTCCTGCTCCAATGCCTTCTGCATTTCCAGTCGGGTCTGA

Transcript

SKAU_T00092650

Protein

SKAU_T00092650

MDAYMAAYMDACMAAYMDAFTEADAVVMGDVTYGACCVDDFTARALGADFMVHYGHSCLIPIDSTAGIKMLYVFVDIQLDTAHFLDTVQYNFPPGQSLALVSTIQFVAALQSVSIAMKQTYDVLVPQCRPLSPGEILGCTSPRLERPVNALIYLGDGRFHLESIMIANPDVPAYRYDPYSKVFSREYYDHKAMRETRQKAIEQARSGQRWGLILGTLGRQGSPKVLEPSLFRHLESKLESLGKTYNRVMLSEIFPSKLDLLPDVDVSEYGQCLEEVAIGGCSRGGERDSESIVAHKTALGELESRLGARGAAVALQQVEWQEVYPMDYYANQSLGPWAVNHRDNQPPRPTHRQAKPNQKVSFKTKAQSWPLGVLNPATRVSFESGEEGAGGDNSLQYCRVSVMGLTKKQRRDQKKIDRRHKAGQLRRNKRDLVLTQKRSLGSRDGPPHLVAVVALHDGVDTEAVTRLLRGERAGGLVQEKAGVTGVPDSFGLVIPRFKQRFIFVNPGRVDLHSLLDLAKVADSLLFVLDCTVGWDSYGDYCLSCLFAQGLPSHVLVCQGLSALAVKKQLECKRALQRVAETRFPGARLCPLDTEDEATLLLRHLGAQKQKKLGFRSRRPHLLAQHASYTPHPSEGAKGTGTLCVSGYVRGRPLQVNRLVHIVGHGDFQLARVDAPPDPLPLIFSTQTKHEKGEVEMQLPTAVRSALANMPLKDYRALAREADKFFSAGRQSSGAALGPAHNDSTLPVDAVAITGTTATTQQQGVGKRQGRRSLAAMSVGPKVSTPLLGADFLCANSLLMDVKNRRLVNAETFTSLPLTEPTFSSASTKHGALQEFLGMGIPPKKAIDWSKEMDRAFSATKGALANAQRQLAFISEFTTDIRHVAGKDNRVADCLSRAIVGALQDIAFDDAGNTLLCVLTTCTWTWTAPKEDLQCSSAELVYGQPLRRTALLDSARAFAPVPTSQHVLMNSGGTDVAATSGTYIYNSPPTDGGQDVNGAVVRVLMDADPSLRESLQTEAEVDPMDGEQTWPTDSELLEAEEARKNKKVMKVPKGTSSYQAAWILDDGEENGESEDDDDDDDDEEDNDGTMMEGMEGEEDSASQDAGSGCASDSEEEIEEEEEAEEGEELRRYREARANDLFPDEVDTPIDMPARIRVSVPHRGTPLENLPPDYSRIFQFQNFEHSRRRVLAEASQEEEGAMVGWYVTLHIEDVPPSVMESFRTGKPLVLVSLLPYEQKMSVMHMLVRRHPANTEPIKSKQELVFQCGFRRFRACPIFSQHTSADKHKMERFLPAGNPTVVSVYAPITFPTAGGAPLQTEPRRRGVVVGEVGSEEYWDTPRTQNLVATGCLLGCNPQRVMLKRIVLSGHPFKINRHSAVVRYMFFTRVAFSLCRLSFGYSLNLTVCLPLSPPEDILWFKPVELRTKWGRKGHIKEALGTHGHMKCVFENQLGSQDTVLMNLYKRVFPRWTYDPYVPLPSGEQGDENEDKDKFVRPDPDTLSGRRPGSRPLILHRSLCLLSGFLSVAACPSLLTTAASCSRRHRHPVPHHHCRHIWTPYARIPLLQAMEEACADIDAASVQGTWSNRGASSQIPYSPKERRTPQPSVSKDEVNPTAIGTQGEENPTAIGEENPTAIGIQGEENPTAIGIKGWKNHTAIGIQGEENPTAIDTQGENPTAIDTQGEENPTAIGTQGEENLTAIGTQGEENPTTIGTQGEEKPTAIGIQGRGWKSPTAIGTQGEENLTVIGIQGWKNPTAIGIQGENPTAIDTQGENPTAIGIQVNENLTAIGENPTAISTQGEEKPTAIGTQGEENPTAIGTQGEENPTAIGTQGEENPTAIGTQGEENPTAIGIQGRGENPTAIGIQGEEKPTATGLGCGAGNLPGQEALSSRADRLIAAALGKLARLRGRRRRSGGCPCAVSGWLPVQMHRQTVMVRLLEGSSSDTDWDELVKMANEMVEEPCADCLTLRGRLSLQPLLLFLPLQKLLPALSGPLRSTSPSLGPSALPATLWAPPLYQPLSGPLRSTSPSLDPSTLPDTLWAPPLYQPLTGPLCSTIPSLVLSSLLPLSSFFFWMSSYTLSYSYTVLSCSNAFCISSRV

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01866	Diphthamide_syn	Putative diphthamide synthesis protein	Family	Interproscan
PF04950	RIBIOP_C	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal	Family	Interproscan
PF08142	AARP2CN	AARP2CN (NUC121) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007034	Domain	Ribosome biogenesis protein BMS1/TSR1, C-terminal	Interproscan
IPR012948	Domain	AARP2CN	Interproscan
IPR016435	Family	Diphthamide synthesis DPH1/DPH2	Interproscan
IPR030387	Domain	Bms1/Tsr1-type G domain	Interproscan
IPR039761	Family	Ribosome biogenesis protein Bms1/Tsr1	Interproscan
IPR042263	Homologous_superfamily	Diphthamide synthesis DPH1/DPH2, domain 1	Interproscan
IPR042264	Homologous_superfamily	Diphthamide synthesis DPH1/DPH2, domain 2	Interproscan
IPR042265	Homologous_superfamily	Diphthamide synthesis DPH1/DPH2, domain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12858	RIBOSOME BIOGENESIS PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000462	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000479	Biological Process	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0017183	Biological Process	protein histidyl modification to diphthamide	Interproscan
GO:0030688	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0034511	Molecular Function	U3 snoRNA binding	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan
GO:0090560	Molecular Function	2-(3-amino-3-carboxypropyl)histidine synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-