Detailed information of SKAU_T00090200 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T00090200CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATEDCM056378.14220252342253131+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Transcription Factors FamilyRHD

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00554RHD_DNA_bindRel homology DNA-binding domainDomainInterproscan
PF01302CAP_GLYCAP-Gly domainDomainInterproscan
PF05602CLPTM1Cleft lip and palate transmembrane protein 1 (CLPTM1)FamilyInterproscan
PF14560Ubiquitin_2Ubiquitin-like domainDomainInterproscan
PF16179RHD_dimerRel homology dimerisation domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000451FamilyNF-kappa-B/DorsalInterproscan
IPR000626DomainUbiquitin-like domainInterproscan
IPR000938DomainCAP Gly-rich domainInterproscan
IPR002909DomainIPT domainInterproscan
IPR008429FamilyCleft lip and palate transmembrane 1Interproscan
IPR008967Homologous_superfamilyp53-like transcription factor, DNA-binding domain superfamilyInterproscan
IPR011539DomainRel homology domain, DNA-binding domainInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR030492Conserved_siteRel homology domain, conserved siteInterproscan
IPR032397DomainRel homology dimerisation domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR036859Homologous_superfamilyCAP Gly-rich domain superfamilyInterproscan
IPR037059Homologous_superfamilyRel homology domain (RHD), DNA-binding domain superfamilyInterproscan
IPR045172DomainTubulin-folding cofactor B, ubiquitin-like domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR21347CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0007021Biological Processtubulin complex assemblyInterproscan
GO:0007023Biological Processpost-chaperonin tubulin folding pathwayInterproscan
GO:0012505Cellular Componentendomembrane systemInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0043014Molecular Functionalpha-tubulin bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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