Gene detail

Detailed information of SKAU_T00083530 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00083530	HMG-BOX TRANSCRIPTION FACTOR BBX	CM056378.1	19545740	19565824	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00083530

Transcript

SKAU_T00083530

ATGAAGACAGGAGGACGGGGGGCGGAGCCGCCCGTGGAGGGGGAGAAGACCCTGGACTTCTCGGAGGACGAAGAAGAGGACGATGAGGAAGAGCTAGAAAAGGAGCCCCCACCACGCTGCGGAAAAAGCCAGAGCCAAGAGGCTGAGGGAGGAGTTGGCACTGAGGAAGAGGAGTATGAGGGAGAGGAGGAAGACTCCTCTGAGCAGCGTGCCCGGCGTCCCATGAATGCCTTCCTCCTGTTCTGCAAGCGGCACCGTTCACTGGTCCGGCAGGAGCACCCCCGGCTGGACAACCGAGGGGCCACCAAGATCTTAGCCGACTGGTGGGCTGTCCTGGACCCCAAAGAGAAGCAGAAATACACGGACATGGCTAAGGAGTACAAAGATGCTTTCATGAAGGCCAACCCGGGGTACAAATGGTGCCCCCCATCCAACAAGTCTGCGAAGACCCCCTCACCCAGCACCGGCTCCCGCAAAAAAGCCTGGCCTTTTCCCTCTGAGCTGCCCAAGAACTGCGCCACTTCCAAAAAGCTGGCCAAGGCTGAGGCCGTCCCGCAGATCAACTTCTCCATGGCGGATCCCACTAAAATGGGAGGACTGAGCATGTTGCTGTTAGCAGGGGAGCACGCCCTAACAGCCCGTGAGATCTCCTCAAAAAGGTCCCCTTTGGCTGCTGACTCGACCAAGCAGACAGGGCGGTCAGACCATTCTGCTGAGGTCTCCTCTGGTACCCCACAGCCCACTGCTGCGGGCACGGCCACAGAGGGGAACCTATCTGAGGTGTGTCCTCCTCAGATCTCTCCCGGAACATCTCGACAGGGGAAAACTGACCCAACAAAGGCCTGCATGAATCCTCCTCTTTTTCACCCGCCTCAGGTATCCAGCAGTTCCCATGCAACTGTACCTGAAGCCAAGCAGTGTGGACAGTCTGCTCTTTTCCAGCTGGCTGAGATGTGTCTGGCATCTGAGGCGAAGAAGACCTCAGCAGCACATCCAGGAGGTCAGTCCCCCGCTGCCCCCTCCACAGGCATTGCCACGGAGACGGTCGCCAGGGAACAAGCCGGCGATGCTCAGGGAGCCCCTCTGTCCTCCCCGTCTGTCTCTTCCtggtcctcctctctctctgcctcttcgACCCCCACAGATGACACGCCCACTCCGCTCAGCCCGCCCCAGACcctgaaaaagaagaagaagaaaaagaagagagaAGGGTGCGGGCCTGTCGAGGGCGGAGTCAGCAAGGGCGAGGCCAGGAGCACGTGCACGCCCACCAAGCCCTGCAAGAGGAGCCCGTCCTCCGAGTCGGACCTGGAGAGTCTCATCGGCACCATCGACGCTGTGGCCAAGGGGTCCTGGGGCACGGAGGACGACGGGGAGGAGCTACCCCGGAAGAAGTCCCGCCCACCCTTAGATCCCAGCTTCCCAAAGAGGAAGTCGAGGCCCAAAGCGAAGAAGTCCATCAAGAtgcaagaggaggaggaggaggactatAAGCCTGTGGAGACACCCACGCCCTTAGCCTGCCCTGGGACTGATGGAGACGGGGAGGTGCCCAGTGTGAAGACAGAACCCTCAGCTAGTGCAGAGGAGGCCCTGGCACCACCCAGCCCCTTAGCCATGTCCATGAGGAGCGAGGATAAGCTGGAGGCCAAGCTGGAAAGCTGCGGTTCCAGGAAGTCTGAGAGGACGTGTAAAGGGGCCCTGTACAAGACCCTGGTGTCTGAAGGAATGCTCACATCACTGAGGGCCAATGTGGACAGAGGAAGAAGAGGCTCTGGTCGTGGGAGTGTCTCAGACCTGGAGGGAAGCTGGCCTGAGGAGAGCTGGACGTTCGCTCAGACAGGTGGTAACAACGGCAAGAAGCTGAAGAAATCGAAATCAAAAGACGAGTCTGCTCCAGGTCTAGGGAAGCTGGAGGAGGAGTTTGAGAAGAAGTTTAACAGCCTGCCGCAGTACAGCCCCCTGACCTTCGACAAGAAGAGCACCTGCGTCACCAAGAAAAAGAAAAGCTCTGGGAACGGAGATGAGGATCTGCCCAAACCCATCAGGGGTTCATCTCCGTCTCAGAAAAAGAATTTGTTCCCCAAGATTGTTAGCAAGTATAAGCACAGAAAGGAACCGCCCACTACCGTGGATAAAGCCATAGAGGCTGAACCCCTGGCCCCTCCACACGCAGCCCAGGTGGCCAAGCACGTGGGACCCTGCCCCACACTGTGCCCAGAGGGTCCGGGTGGGCCGGAGACTCTGGTGGGCAGCCAGAAGAGGAAGGCCAGGAAGAGGAAGATCACACACCTGGTGCGGACAGCCGATGGCAGGGTGTCCCCGGCAGAGGGAGACCAAGCCAGAGAGGCACAGGATCAGGAGGAAAAGCCATCACCCCAAAAGACTTTATGCAACGAATATCGATCAGGACCACAGGAGGCATGTGCTGTCACCACAGTCACGGCGGACCGGCCCGGTGTGTCTGGCCTCCCCGCGTTTTTCAGTCTGGCGGCTCTGGCGGAAGTGGCAGCTATGGAGAATGTGCAAAGAGGCCAGCACACTGCCAGCCTGCCTCAGGAGGGCCAGTCCAAGGAAATGGCCCAGACCCATGTCCTGATCTCCTGTGGCGATCAGTGAGAGGACTCGTCGTTGGGACAAACAGACGCCGCGTTCTTCTCTTTTCCTGGCCTCCGAACACTGGGCCGGTGAGGGAAAGCGAAACGAACGGGAGCTCTGCGTGTGAGCCAGGCTCGGAGCAGCCCGTCAGACACTTCAACTAGAGGGAGCTCTAGGTTGGTCGTCTCTGAAGCTTTTACCTGGAGACGGAGCCCGGCTCTTCCATCAGGTGGCTGTGGTGGGTAGCATTGCTTGAAGGAGGGCTTCTGGGTTTGCACGCAAAGCGTGCATTTGAAGGACCTTTGTATATCCTACCCGTACGGACATCCTTTTCATTCAATGCTGCCTCACTGCCACATCTGTGAGACCTTTGTGAGACCTTGGATGCTCTTGTCTAACGCTCTTTGAATAAGCCCCACTATTGTCCTGAACATTTCCCTTAACCAGACTGGCACAATAAGGGTTGATTTCCGTCATGACCTCAAAACGGCTTCCAAATGTTACCTCCTTCTCTGCTTCTTAGTCAATTACTGTGGCTCTGATTCAGTGTCTCAGGTGCTTGAggtatagaaatatatatatactctagAAACAAAATCATTCACTCCAATTTCTACAAATTCAATTCATTCTGCAAACACCAACAATGATATTTACAAGCCTACAGTCATAGATCAGAAACTTGGTTTCACTTGGTATACatcattgcattttatttttaattatttagtcCGATCAGGGTACATTCATGATTTTAATTGGACAGTCATGCTCATTTTACCACAAGGGAATGATGCTTGTACATAACATACTAAATTTATCAAATTCACTACAAATAACCCTGATGTAAGGTACACCTTTCCCCCCTTCTTATTACAACTTGAAATTAAAGCCAGAATATTCTTATGCAATACACagcatttcaatttcaaattACATTCAATGCTTTGATAAGACTTAACAGCTACAAAATCGAGTGTTATTGTTAGATATTGCCAGAGTAGAATGAGAACCTACTAACATGTAAGATTCACATCATTTATGTAATCTTTTAAGGTACACAGATCACCATATTTAGTCTGTGGACAGATTGACTAATGACGATTCAAAGCATAATTCAGATGAAATGCATTGTGTCAGCTCAGTAGACCGTAGCATCTAGATAAATTATCCAGTTGTGAGTTACTAGTTTTCTACAGTGAATAGTATAATAACACAAGACaatttttttcataatttcttctttttttttttgcttgaaaaggctGTTTTGTTTTAAAGGAGTTGTAAAGAAATATTTTTCTGTTTCATATTATTTCTAATACTATCTTTTTACTGAATGTTTTCCACTTGTTGAAATATCTGAAATTAACTGTCAATTTAAAAGCAAAAGCAAAATGTTGTTAGATTATAGAAAGCTGGAAGCTTAGATTCCCAAATGCAGACAGATTACTGCTTTATAGttgctgctttatttcaaatGCAGCACATATTCTAATGGACTTGAAATACCCAGTCGTGGGTTCCATTCCACATTGTGTACATATATGTATGTTTTGCTTGGGGAGCTTTTATTGTAAATGGGAGGGCTGATTTTACTGTGAGATGCTGTACCCTAGTGCCGGCTCATTTTTGGAATTTCACTGAAGCTCACTGTGTAGTATACCACTTTTCAGGTTTCCATTTAgggtttttatattttaaaaagttacaACTATATGATCCATATAGTTTATCATTTGGTCACAAATCTAAGGTGcgaaagcttcttttttttaaaaataggacACGGTATTTAGATCTAGATCTATGTAGATACATTTTAATGCATTACTGTGTACCAACCTGCTCATTCTCTACTGCTGGGAATGTTTGCAGTTCTTCACAGACAGTTACAAATGGTTCATTAGCTAAACCAGATAGCTTTCAGTGCTCCTCTGTAGAATCTGCAGCTTTAGACCTTGTCGGTTCACTGCAGCAAAACAGTATGTAGACGTATGTCACGCTCACGCACCATGACCAGGGCTGGTCGATGGAGCCAGAAATAATGTTGGCGAACTTTGATTAGCTCCTTTAGCTCTGTCTAGAAACCCGATTATGTCTCAATCCTAATGGTCAGTACAAGTCagattttagtttttagtttttttaaccaTTAAACTACTGTGGTTGACCACAGACATTCCCCCCGTAAGGTGTTTTAGCCCTGTCATAGATTAGTGGTGCTGCTTGAAAAGCCTTACTGAAGTGCTCACATCACTTTCCACTCTTTGATaggttcatttaaattttttttttttttgatcttcCATCAACAAATATTTTCCTCCCATAATGTTTTCTGTGAGGTACCTTTATCATGCAGTTGACTGAGATGTgttgtgagtgtgttagtgtagGACCActgttttttacatttatatttttgacCTTAGAGCTTTTTCCCTCGGTACCCAGTTTCAGGATTAGTATGACTGTTGTCAAAGAAAATCTCAGAGAAAAttacaagaagaaaaaacagAAAATGCTTACGGTAACCTGACCAGCAGCAGACAACTTACAAAGGCTGCAGTGATTTGAGTTTGTAGTTCCTGATTCATTCCTGTCAAGTGAATATATAAAATCCTAAAGCAGCTGCATTGCCGTCTCCGGCCATCGCTTGTTGAGAATTGTGGAAACGAACAGAGTACAGTCTCTTCTATGTGCCACCTTCAGATTAGTGTAGATGAAACCATGTCTGTCTCCAGGTAGTAGAGTGCAATACAATGGAAGGGATTCATTTTCTAATATCTGTTCACTTTTTTCAAAGAGCGGAACTAAATACTATGGTAATTACTTCATGGTATTTAGCAGAGGTACTGTTATGAGCCGCCAGGTAAGGTTTTACTTCATCTACTTCTATTTGATTTTGCAGGTTTGGTATAAATCATGATTATAATACACAACTATTTAGAGACAGTTTATGCTATGAAGGTGCAGgacaaatacaaaatataatataTTCTGGAAAGGCAGAGGGACAATAGCTTCAAGAGACATATGTATGTATAGACAAAGGCAAATGATTTTCCACAAAGATATGTTTTAAAACGGCCCACAAAGTACTTCCACTCCAGGCTATTCTTGCACAATGCTCATgctatatttttgtcattaggttggatttgcaaaaaaaaaagaagaaaaaaatgctaCAAAATTGTAATTATTACTAAATAGATGATAGATACTTCAAAATGATTTAGACTAATTTAGACTTTACCTTAAACTGCCAATTGTTTGCCATGAAACTAAACAAAACATATATGTTCGTGTCTTCCCAGAAAATGGTCTTCTTAATTAAGTCCTGCATATTAGTAAAGGTTTTTTCCTTTACTAATCTAGCACTAATCCTGAGATCTAGCACTAATCACAGTACTGCAGACTGACAGCAGTTTAAGAAAGCTTTTACTGTTACTATGAACACTCTTAAtaatgtattcttttttttttttgcagacatTTGCCAAAGAGAAGGGAATAGTGTCTTTAAATGGAAATATAGCAAGACAATTTTTAGATTAGCCTTTGCACTGAAATTTGTAGTCACAATTGTCTTCAGGTAATTTGTATATATCTATAACTCAATTCCTAACAATACTCCTAAGAATGCTCCTCTGTCTTAAGCTGGTTGTTGGAACAGTTTAGAAATAAATGTCATCACTTTTTAGAAGACACCTGTTTTAGAAGATGAAATTTGCACCTTAAACTCTAAACCAAATGAATTACTCTGACTGTACTTCAGAATTGATCTTCCCCACATTGCTCGTTTTGATAATGATTTTTGGTGTCTTGGAGCCACTGAGATAAGTTCTTCAGCCATATTAATGGAAAACAGAATAAATGATCAGCACTTGGTTTCTCTTGCCTGTAAGTATGAATGAAAGTGTTTTAAACAAATCTGAACATTCTGGCATGAAGTGTTTAGGGGAAAAATTTGTCCAGTCTGCACATTTAGAATCCCATATGAAATATCTTCCACTTTTCTACATAGACGATGCCTGTATAAAAATGAGAGTTATATTAATGATATAAATATTGATATTACCCCTTTGTTCTAGTACTGTCGCTTGAATGTAATGGATTTTGTACCTGTATTTTTCTATTTTCTAGGcactcagatctttctgatatgtGATGGAATTCTGCAGAGGAGATTTACACTGCTTATTTAGTAGAGTAGTTTGTTACAGCCTACAGTCAGAACAACAGCACAGACTTTGCTTTGagaaatatgatttttttattcaTGTGATTTATGCATAACAATCTGTTAAACTGGTATATCAGAGTTTTATTTCTAAGATTATATTAGCCAGAATTTTCTGTAGGATGCAACCAAAACTGTTGTGTTCTTGAAAAGCTAAAATGTTTCAGAGATGTTAAAAATTGCATAAACAAATGCCAAACCCTATGtactttgtatatttatttctgtTATATTTTTATGGATTGTTTATCCGAATAGTCTTAATAAAGAATAGATGTGCAACCTGAAAGTTCATGATTTAGCTAATAATAGGATGTGTGTTGTTGGCTTTCTGAGCAGTCATTAAGTGATCTTTAGGGCTTTTTCCTGAATTAATCATGTTTTCCCTTCTGAAAGTTTCCGCAGTGTGTGCTTGATCTAATTTATGTGAGAAgtactgtattattttatatggaCTCAATTCAGTCCTGTTGTTTATGCAGCCTTGCCTTATTGGAAAGCCTGCTTACAGAGGGGTCCCCTTGTCTCTTCCCTCCCTGTTAACACTGCTGATTGAGCACATTTCCCTGGAACGCCTATTAAAATTATCAATATTATATCTTCTGGTCTAGAAAGTTAATGTAGTTacgtattttttgtgtgtgtgagagaaatgaGGATAATAAGTGCAAG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF09667	DUF2028	Domain of unknown function (DUF2028)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071	Domain	High mobility group box domain	Interproscan
IPR019102	Domain	HMG box transcription factor BBX, domain of unknown function DUF2028	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR049523	Domain	HMG box transcription factor BBX, HMG-box domain	Interproscan
IPR052412	Family	Cell Cycle and Developmental Transcription Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13059	HMG-BOX TRANSCRIPTION FACTOR BBX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-