Gene detail

Detailed information of SKAU_T00081400 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00081400	SEGMENT POLARITY PROTEIN DISHEVELLED	CM056378.1	12674593	12683043	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00081400

atgacTGGGTTTGGGAAGAATGTGAATGACATCAACTTTGAGAACATGAGCAACGATGACGCCGTGCGAGTGCTGAGGGAGATTGTGCACAAGCCAGGCCCTATCACTCTAACAGTGGCAAAGTGCTGGGACCCCAACCCTCGCGGCTGCTTCACTCTGCCTCGGAGTGAGCCGATCCGGCCCATTGACCCTGCTGCGTGGGTGTCCCACACTGCGGCCATGACGGGGGCGTACCCAGCGTACGGTATGAGCCCGTCCATGAGCACCATCACCTCCACCAGCTCCTCCATCACCAGCTCCATCCCTGAGACCGAGCGCTTCGATGATTTGCACCTGTCCATCCACAGCGACATGGCAACCGTCGCCAAGGCCATGGCCTGCCCAGAGTCTGGACTCGAGGTGCGAGACAGGATGTGGTTGAAGATCACCATCCCCAACGCCTTCATAGGGTCTGACGTTGTGGACTGGCTCTATCATCGCGTGGAAGGCTTCACTGACCGCCGTGAGGCGCGCAAGTACGCCAGCAACCTGCTGAAGGCCGGCTACATCCGCCACACCGTCAACAAGATCACCTTCTCTGAGCAGTGCTACTATATTTTCGGAGACTTGCGTGGAAaCATGGCTAACCTCTCCTTGCACGACCATGATGGCTCCAGTGGAGCTTCTGACCAGGACACCTTagcccccctgccccaccccgGTGTATCCCCCTGGCCCCTGGCTTTCCCCTACCAGTATCCCATTCCCCACccctacaacccccaccccccgcacGAGCCGCCCCACAACTACACCGCAGGGGGAGGCAGCGCTGGCAGCCAACACAGTGAAGGGAGCAGTGGCTCAAATCGCAGTGGGGGCGTTAAAAAGGAAGCTAAAGCTGGAGCCGGGGAGGCGGAGTCCAAATCTGGTGGCAGCGGCAGCGAATCTGAGCACAGGAGGGAGAAGGCCCCCAGCGAGCACTCTGCGGCGCCCCCTAGTGAACACAGCGTGCATAGCGCCCACAGCCTGCGCAGCACCCATTCTGCCAGCCCCGGCCTGGTGTACGGCCCCCCCGGCTTGCCCCCCCAACCTCAGACGGCCCCCGCCGTGGCCCTCGCCCCGCCTGGCTCCCCCCCCAGCCGCGACCTGGACTCTGTGCCCCCCGAGGTTGCCGCCTCACGGCAGTCCTTCCGCATGGCCATGGGAAACCCCAGCGAGTTCTTTGTGGATGTCATGTGACGTGCGTCAGGTGACCGGGGTGCCGCGTCTCGTTGGAGGCATTCGGCACTCCTCTTGGTGCTGGGAGAAGGGAGGATGTGGAGAAGGGAGGgatggacagagagggagagaaggagggaaggagagagagagagagagagagagatgagaacgAGACGTGCTGCTGGTTGGTCACAAGAGTAACATTTCCTTTCCTTCACGGTCTCTGCGGTGTGTTGCTGCTACTTTCTTCAGTGAAGAAGACCTAAATCAAAGCGTCTCTCTAGTTCCCTTTTCCACAGAAGTGTTTGCTTGCGTCAGATGGGTGGCGTGTGAGAGAGCGCAGAGAGAGCGCAGGTGGAAgtgtcacttcctgtctctcccGTACCCTCTCTCCTGTCCTTGTGTGCTCTTATtatctttttttccccaccaaACATACTGAGAGGAAGAAAGGGGGTGAGGAGCGGAACCCACTTCCTGTCACATTCATAAAGACTGAACTCCATAATGAACAAACAGGACTGAACTCATTCCATCATGAAGTATCAAAAATAGCCCAaatgagaaaaacagaaaaaggacagaaaaaaaacaaaagcatgtGTAAATAATAATTCACCATCCGCTACGGATCATATTGCTTCTTTGCAGCAGCACACGTTTTGAAATTCCTCCAGGGTGCTCATAGCCTTATGATATGCaaaatatttctgttcaatgCTGATGTATACTGCCATTTTTGCTTGGCCCAAAATAAAATTTATCAGTTGGCAAATGTGTGAAAACCCAATATAAAAATTTCCTAAATTtcccaaaaaacaaaacagagaaatCACCCTTATacagtcgagagagagagagagagagagacagacagagagagagacagagagagagagacagagagagagagacagagagagagagacagagagagagagacagagagagagagacagagagagagagacagagagagagagacagagagagagagacagagagagagagacagagaaagagagacattgACAGACAGACCTTTCACTCTGGAGCTGTAACCAAACTGGTGCTGTTGTCCTCCGTGTACTTACTAGCGAGTTGTAACAAGTGTTGTGAGCTGTAACCGCATCCATTGGTGTTGGTGATAAAATGTAGGAGATGGGGCAACTGTACCATGTCAAATTGGCCAGATTTTGCTCTCCTTGTTTCAGCTCTACATTTGGGGAAACTGAGATTCAGCCTTTAGGTGTACGTTTCATGTCGACGTTCTGAGCGCCACGTTTGTTTGCCGGGTGAATACGGAACTTTGCCTCATTCGTCTTCTCTAAAAATGTAGTACATCTTCCTCTGCTCTAACTTTCTGCTGTAGCTGCCATGGCAACGGCAGTATAGTAGGGATTTTGGAATACATGGGGTTCAACCATTTTTGTCTGGCAAAGGGCAGGGTGTCCACTGGTATAGCAGTCTGAACAAATCCACAAACGCGTGCACACAcgatcacacatgtacacacgatcacactcatgtacacacccGATCACACTCATGTACACAGACTCATGCACACACGAGCACACTCATGTAcagactcatgcacacacgcagtGGGAGTAGTTGTGAAAGTGTGAGATGGATGGCCTTGAACAAGCCCAGTGCCCTTGTATGTCTCTATCTTTCCCagtgtttaaatacatttttatccaaTTTGCAAAATAATATTTTCTTCATATTTTGTCATTAACATCCTGTATATTTATAGTTTGTCTCATTGCAACAATGTTCACCTTTTTATAATTTCGTCTGCTCATCCGTTGTTATGGATAATTAGCGAATGATGATGTAGTGATATCATATATGCTCCAGTTTCATACATGCTGTGCTGTATGCCgttttatgaagaaaaaaaaaggttttatttatAAACATAGTTTTATTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00610	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan
PF12316	Dsh_C	Segment polarity protein dishevelled (Dsh) C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000591	Domain	DEP domain	Interproscan
IPR008339	Family	Dishevelled family	Interproscan
IPR015506	Family	Dishevelled-related protein	Interproscan
IPR024580	Domain	Dishevelled C-terminal	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10878	SEGMENT POLARITY PROTEIN DISHEVELLED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005109	Molecular Function	frizzled binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016055	Biological Process	Wnt signaling pathway	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:0090179	Biological Process	obsolete planar cell polarity pathway involved in neural tube closure	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-