| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| SKAU_T00079080 | PRE-MRNA SPLICING FACTOR PRP8 | CM056378.1 | 5578574 | 5580804 | + |
| CDS | |||||
| SKAU_T00079080 | |||||
| Transcript |
| SKAU_T00079080 |
| Protein |
| SKAU_T00079080 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Jab_MPN |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01398 | JAB | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | Family | Interproscan |
| PF08084 | PROCT | PROCT (NUC072) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000555 | Domain | JAB1/MPN/MOV34 metalloenzyme domain | Interproscan |
| IPR012984 | Domain | PROCT domain | Interproscan |
| IPR027652 | Family | Pre-mRNA-processing-splicing factor 8 | Interproscan |
| IPR037518 | Domain | MPN domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11140 | PRE-MRNA SPLICING FACTOR PRP8 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000244 | Biological Process | spliceosomal tri-snRNP complex assembly | Interproscan |
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005681 | Cellular Component | spliceosomal complex | Interproscan |
| GO:0005682 | Cellular Component | U5 snRNP | Interproscan |
| GO:0008233 | Molecular Function | peptidase activity | Interproscan |
| GO:0008237 | Molecular Function | metallopeptidase activity | Interproscan |
| GO:0017070 | Molecular Function | U6 snRNA binding | Interproscan |
| GO:0030619 | Molecular Function | U1 snRNA binding | Interproscan |
| GO:0030620 | Molecular Function | U2 snRNA binding | Interproscan |
| GO:0030623 | Molecular Function | U5 snRNA binding | Interproscan |
| GO:0071013 | Cellular Component | catalytic step 2 spliceosome | Interproscan |
| GO:0097157 | Molecular Function | pre-mRNA intronic binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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