Gene detail

Detailed information of SKAU_T00078460 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00078460	ATP-DEPENDENT RNA HELICASE	CM056378.1	3658026	3677193	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00078460

GTGTGACAGTGCTTACTTACTGTCGTCATTTAAACGCGACATGGCCGATATGTCTGTTATGAGATTCGACAGCTAACCCTAACGTTAGACAGATATTTGAATTTCTTCCTATGTTTCTGTAACTTGTATTGCATACTTATTTTGAAGGTTTTCCATTTAATTTCATTCATATATGTATTTTGAAAATATTGTGCCATATTCTGAATTTTCGCTCGTTAGCCAGCGGTATTTCGAAAAGTGATTACCCGGCTGGTTAGCTGGCTGCAAGGTTGGattgctgggttagctagctggcttccTAGTGACCGTGCATTGTAGCGCTACCAGGACAGGTAGCCTTAGCGGACACCAGCAGTATAATTAACGTTAACTGACTGTAGCCGTAGCGTAGGAGCATACCAACGCCATTACAGGACGGTATGAGTTATGGTTACGGCAATAGGCGAGGCCGTCGAGAGGATCGTGGATTTGGACATGGAAACGAGGAGAGGTGGGACAGAGGAGCCGGGTCGAGCAGCGGAGGATACCCAGGAAACTCGGGCTGGGAGTCCCGGGAGGAACGGGGGCGCGGTGGTGGCTCACGGGGTCGGCACCCGGGACATCTGAAAGGCCGAGAGATCGGCCTGTGGTATGCAAAAAGAGGAGGCATAAAAAGGAAGGAAGATGACAGGAAATCGGCAACCGTGGTGCAGATGGACGAGTCTAGAGAGGAGCACATCACTAAACTGTTAAACACGGTCCAGAAGGAGCCTTACGGCCGCGGAAGGGACGCCCACCCCTCCACGTCCGAGAGCTGGCGCTCAGGGACGGACACAGGTGGACACAGCTACTTTGATGGCGAAGAGCCTCCCGCAGAGGTTCTGAAAAAGCCAAGTACTGCAGAAGTGAAGCGGACAGTGAAAGACAAAGACCTGGAGTATCTGTTCCAGGACATCCTCAGAGATTCCAGTCTAGACCAGGAGATGAAGAGAGATCTGCTTAAGAAAAGAGACAACCCAAAGTACACAGAGATGCTGaaattCCGGGAGAAACTTCCTTCATATAAAATGAAAGAGGAGCTGGTCCAGCTGGTCCGGGCCAACCAGGTTCTGGTGGTGAGCGGGGAGACTGGCTGCGGGAAGACTACCCAGGTGACCCAGTTCATCCTGGACGACTACATTGTGCGGGACATGGGCTCTGTGTGCAGGGTGGTGTGCACACAGCCCCGCCGGATCAGCGCCATCTCCGTGGCAGAGCGGGTGTCTGCCGAGAGGGCTGAGACAGTGGGGGAGGGGAACTCTTGCGGGTATCAGATCCGGCTGCAGAGccgGTTACCACGGAAACAAGGCTCCGTGTTGTATTGTACAACGGGCATTATCCTTCAGTGGCTCCGCTCGGATACACACCTGTCCAGCATCAGTCACCTGGTCCTGGATGAGATCCACGAGAGGACCCTGCAGTCAGACGTCCTGATCACCATCGTCAAGGATCTGATCCGTCTCCGCGACGACCTCAAAGTTATCCTCATGAGCGCCACGCTCAACGCCGAGAAGTTCTCCAAATACTTTGaCAACTGTCCCATGGTCCACATCCCCGGCTTCACCTATCCAGTGAAGGAGTACCTgctggaggaggtggtggagaTGCTCAGGTACCACCCACAGACCCAGAACCGGAGGCCCAGGTGGAAGCGGCGCTTCATGCAAGGGCAGATGTCCCGGCCTGAGAAGGAACAGAAGGAGGAGGAGTACAAGGAGAGCTGGCCCTGCTACGCCCGCACGCTGCGGGACAGATACTCCGACAGCACGGTCGATGTCCTCGAGGCGATGGACGATGATGATAAGATCGACCTGGCGCTGATCGTGGAGCTGATCCGACACATCGTGTTGCATGAAGATGAAGGGGCCATCCTAGTCTTCCTGCCTGGCTGGGACAACATCAGTGGGCTCAACGACCTTCTCATGGCACAACAGATGTTCAAGTCAGaaAACTTTGTCATCATTCCACTACATTCTCTAATGCCCACTGTCAGTCAGACACAGGTGTTTAAAAGACCACCTCCAGGCGTGCGCAAGATAGTGATCGCCACCAACATCGCGGAGACCAGCATCACCATAGATGATGTGGTGTATGTTATCGATGGGGGAAAGATTAAAGAGACACACTTCGACACCCAGAACAACATCAGCACCATGACGGCGGAGTGGGGTGAGCCTGGCCAATGCCAAGCAGAGGAGAGGGCGGGCAGGCAGggTTTCGCCGGGGAAGTGCTACCACTTGTACAATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002151	Molecular Function	G-quadruplex RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0051880	Molecular Function	G-quadruplex DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-