Gene detail

Detailed information of SKAU_T00044930 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00044930	BICAUDAL D FAMILY MEMBER	CM056377.1	12948341	12993184	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00044930

ATGGAGGTGCACAGCGTGGAGCTGCTCCAGTGCAAGTACCGGGTGGCGGTGACGGAGGTGGTGGGCCTGCAGGGGGAGCTCAAGGCCCTGCAGGAGACGTACAGGCGAAGCGTGGACTGCCTGGAGGGGGAGAGGACCCGCGGCGAGGAGAGGCTCCGGGCGCTGCACGATCACGTGGCGCGCCTGGAGCAGAGCCGCCAGGAGGGCCAGGAGGCGATCGGCGGGCTGGAGGCGGAGCTGCGGGCGGCCGCGGGCGTGGCCAGTGAGAGCCACAGCATGCTGAGCGCGGCGCAGGAAGAGCTGGTGACCTTCAGCGAGGAGCTGGCCCAGCTCTACCACCACGTCTGCCTCTGCAACAACGAGACGCCCAACCGGGTGATGCTGGACTATTACCGACACGGCCGCGTGGCCCGGGGGGGCTGCCTCAGGGGCTCTGACGACGTCCGGGCGCTCCTGTCGCCCCGCCTCACCCGCCGCGTCTCCGTGACCCCCCCCGCGGACTCCTcgccctcctcgtcctcctcctcgtcctcgccCGTCCCGGAGCCCGGCGGCGGCAGCGACCTGCGGAGGGAGCCCATGAACCTGTACAACCTGAACGCCATCATCCGCGACCAGATCAAGCACCTGCAGCGCGCCGTGCACCGCGCCCTGCAGCTCTCCCGCCAGAGGGCCGCCGCCCGCGAGCTCGCCCCCGCCTTCGACAAGGACAAGGAGGCCTGCGTGGAGGAGATCCTCAAGCTCAAGTCCCTGCTGAGCACCAAGAGGGAGCAGATCGCCACGCTGCGGCTCGTCCTCAAGGCCAACAAACAGACGGCGGAGGGGGCGCTGGCTAACCTGAAGAGTAAGTACAACGGAGAGAAGTCCATGGTGACGGAGACGATGACCAAGCTGCGCTACGAGCTGAAGGCCCTGCGAGAGGACGCCGCGACCTTCTCCTCCCTCAGAGCCATGTTCGCCACCAGatGTGATGAGTACGTGACTCAGCTGGACGAGATGCAGAGGCAGCTGGCGGCGGCGGAGGACGAGAAGAAGACGCTGAACTCCCTGCTGCGCATGGCCATCCAGCAGAAGCTGGCTCTGACGCAGCGGCTGGATGAGCTGGAGTGTGACCACGAGCAGACGCACCGCGCCCGCGCCAGCAAGGTGGCCAGGATCAAGAGCAGCAGAAGGGTGCCGCCCACCCCCATCCCGTCTGCAGTGTACAGAACCCCCTCTCTCGCCGCCAACCCCCCCTCCCTCGCGCCCTCTGCGCCAGGCAGCCCCCCGGCCCTGGAGGCTCCGCCCACCTCATCGTCGCCCTGGGCGACCCTGGCGCCCACCTACCACCTGGGGCACCCGCACTGGACCCTGGGAGTCCAGGCGTTTACGGTGGACCCCCAGCTCTTCGGCGCGGACGCCTGCCCTTCCGCCCTCCAATCCCCGTCGGACTCCGGCCCcgctgccccctgcccccccggTTCTGCCCCCGCCTCCCCCCAGATGGCGCGGCACCCGCCCCACAGTGCCGCCAGGACATACACCCTCACCGATGCTGCGCGCCCGGCCGCCGATGTCACCCCTCCCCCCAGGCCCAGCCAGCCTGGCCCCTATGCCTACAGCCCCGGAGTGCTGGTTGTGAACGGAGTCCAGCGCCTCCTCCAGCTGAGTCTGGGAGATCTGCCGCAGATGCAGCACCTCCTCCAGCTGGCTGTTCAGCAGCACCGTCTCCTCCTCCAGAACCTTAATCTCATGCTTCAGGCCTTCATACTCCACctgggacacacaaacacacagcatggGTCCTCTGCAGAgcgttcagtgtgtGAATTTGGgcgccagctgatttcacctcaAGAACAGCTGAAGAAGGCCACTGTCATCCTCAATCCGGCTGCCtgcaaaggGAAAGCCAACAGTCTGTTTGAGAAGAATGCAGCCCCCCTGCTACACCTGGCTGGCATGGAGGTGAAAATTGTGAAGACAGACTATGAGGGTCAGGCTAAGAAGCTTATGGAGCTGATGGAGCAAACGGATATGCTGATTGTTGCCGGGGGCGACGGGACTCTACAGGAGGTGGTGACTGGATTGCTGCGCAGAGCTGATCAGGTTTCATTCAGTAGTACTCCCATTGGCTTCATCCCTCtgggttcccagaattccttgaGCCGGAGTCTTCATTTTCAGTCTGAAAACAAAGTTGAACACATCACCGGAGCAACGCTGTCAATCCTGAAGGGGAAAACGGTGCCTCTGGACGTGCTGCAGATCAAGGGGGAGAAGGAGCTGCCGGTGTTTGCCCTGATAGGACTGCGTTGGGGGGCTTTCAGAGATGTTGCCTCCATCATCAGCAAATATTGGTATCTGGGCCCTTTGAAGACTATGGCAGCACACTGGTTCAGCACATTAAAGAGCTGGCCGCAGATCCACGAGGCTTCTCTGTCCTACCAGGCTCCCACACCCCGCCCCCCGGAGGAGTCTACAGTGAAGCCCCCACGCCCCTCCCTCATCTACCGCATCATCCGCCGACTAAAGCTCTACTGGAACCCCCCTGTGGAGgAGCCCCCTAAGGAAGAAGAGCCGGAGCGCTGGGAGGAGCTACAGATCTCAACAGTGGAGTTGTCAATCATCACCAACAACAGAAACCCAGTGGCTAATCGCACCGAGGACTccatgcaggtgtgtgtggagcCAGAGACCATGACTGTTGGGGAGTTCATCACtattggGAGAGAGAAAGCGCAGGATCCAACCATGTGCAGCGAGCGTGGGCATAACCTGGAGACCGGTGCCTGTGTACTCTCCCTGCCCCAGGAGGGCGCCGGTTTCTACAACATCGACAACGAGGAGTACGAGGCCTTGCCCGTGGAGaTTAAGCACATGATGGCCTTCATTGAGCAGGAGGCCAATGAGAAAGCAGAGGAAATTGAAGCCAAGGCAGAGGAAGAGTTTAACATTGAGAAGGGTCGCCTGGTGCAGACTCAGAGGCTGAAGATCATGGAATACTATGAGAAGAAGGAGAAGCAGATAGAACAACAGAAGAAAATTCAGATGTCCAACCTGATGAACCAGGCCCGACTGAAGGTTCTGAAGGCTCGTGATGACATGATCTCGGACCTTCTGAATGAGGCAAGGCAGAGGCTGGCCAACATTGCCAGGGACCCAGTCCGGTACCAGACTCTGATGGATGGGCTTGTCCTGCAGGGTTTCTATCAGCTCCTGGAGCCAAAAGTGAGAATTCGCTGTCGCCAGCAGGATGTGAAGATGGTACAGGATGCAGTACAGAAGAACATTGCCATTTACCAGGCAGCTGTGAAGAACAACATCAATGTCCACATCGATCAAAACAACTTCCTGCCTTCAGACATcTCTGGAGGCATTGAGATCTATAACGCTGATGGCAGAATTAAAGTGTCCAACACCCTGGAGAGCAGGCTGGAGCTCATGGCCCAGCAGATGATGCCTGAAATCCGAGTGGCGCTGTATGGCGCTAACCAGAATCGCAAAGGCGTGGAGCTGCGAAACATGGTAAACCGGATGGCCATTGCGCAAAGGCTTCTCATCAGTATGTCCTGCGAGGCCAGCACGCACTGGACGTTGCCTGCGATTGTTCTCCTGGGGTTCCTTGTGGGGATTGTGTCATCATATCCGATTCCAAGCAGGACTAATGCAACTTTATTGGAGAAAAGATGGGAGACCATGTTCTCCCGATCCATTCTGGGGCTCCCTGGGGAGAAATCGAACATGAACTGGGAGAATGACTATTTGTTGGGCATCAAGAGAGTGCGGAAGCTTTACTGCAACGTGGGCATCGGATTTCACCTTCAAATCCTCCCGGACGGCAAGATAAACGGTGTACACAATGACAACCAGTACAGTCTAATAGAAATCTCCACGGTAGAACGGGGAGTGGTTAGCTTGTATGGGGTGAAAAGTGGCCTGTTTGTCGCAATGAATAGCAGAGGACGGTTGTACGGAACGGCGGTCTTCCGCGACGAGTGCAAGTTCAAGGAGACCCTGCTGCCGAACAACTACAACGCCTACGAGTCTTCCGTTTACAGAAGCTTCTACATCGCCCTCAGCAAGCACGGGCGAGCCAAGAGGGGAAACAAGGCCACCACAGCTGAGCGCACGCTGTGGCACATCGAGGAGATGACTCCTTCCTCTTTTCCCACCCCTCCCTATTCCCTACATTGTGAAGCACACTTTGCGTCCTGTCACACGTGCGGACCGGCGGACACGCCAGGCGGCGAGGTAGCACGCTCCACGTTGCGTTTCCTGGGAAAGGGCTTCCCTGCGAGGCCTCTGGGCGCTGGAATAGTTGGCGGCTTCCTGCAGCCGCATCAGCATGTTCATCTGGGACAGAGACAGACAGGGCACAGCGTACTCCTGTACGTTGCGGCGAAGTTTAACTAG

Transcript

SKAU_T00044930

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00167	FGF	Fibroblast growth factor	Domain	Interproscan
PF00781	DAGK_cat	Diacylglycerol kinase catalytic domain	Family	Interproscan
PF01991	vATP-synt_E	ATP synthase (E/31 kDa) subunit	Family	Interproscan
PF09730	BicD	Microtubule-associated protein Bicaudal-D	Coiled-coil	Interproscan
PF19712	AGK_C	Acylglycerol kinase C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001206	Domain	Diacylglycerol kinase, catalytic domain	Interproscan
IPR002209	Family	Fibroblast growth factor family	Interproscan
IPR002842	Family	V-type ATPase subunit E	Interproscan
IPR008996	Homologous_superfamily	Cytokine IL1/FGF	Interproscan
IPR016064	Homologous_superfamily	NAD kinase/diacylglycerol kinase-like domain superfamily	Interproscan
IPR017438	Homologous_superfamily	Inorganic polyphosphate/ATP-NAD kinase, N-terminal	Interproscan
IPR018477	Family	Bicaudal-D protein	Interproscan
IPR038495	Homologous_superfamily	V-type ATPase subunit E, C-terminal domain superfamily	Interproscan
IPR045579	Domain	Acylglycerol kinase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31233	BICAUDAL D FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008083	Molecular Function	growth factor activity	Interproscan
GO:0008093	Molecular Function	cytoskeletal anchor activity	Interproscan
GO:0016301	Molecular Function	kinase activity	Interproscan
GO:0033178	Cellular Component	proton-transporting two-sector ATPase complex, catalytic domain	Interproscan
GO:0045505	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0046961	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:0048260	Biological Process	positive regulation of receptor-mediated endocytosis	Interproscan
GO:0070840	Molecular Function	dynein complex binding	Interproscan
GO:1902600	Biological Process	proton transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-