Gene detail

Detailed information of SKAU_T00042150 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00042150	TROPONIN T	CM056377.1	5397168	5417931	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00042150

ATGTCCGATACCGAGGAGGTGCTAGAGGAGtaccaggaggaagaggaggaggaggccgaagAGCAGCTAGTGGAGGAAGCacaggcagaggaagaggagcaggaggaagaaATTGAACAGGCACCGGAGGTGAaccaggaggaggaagagaacGAGGGATTacaggcagaggaggaggagaatgaggcagaggaggaggaggaggaagagaaggaggtggtggaggacacCAAGCCCAAGCACAAGCTGTACATGCCCAACATCACGCCTCCCAAACTTCCTGACGGAGAGAAGGTGGACTTTGATGACCTGCATCGCAAGCGGGTGGAGAAGGACTTCAACGACCTTCAGAGCCTGATCGAGCTTCACTTCAGCAGCCgtcagaaggaggaggaggagcttgTGGCGCTGCGCAGCCGGATCGAGCGTCGCCGTGCCGACCGCGCCGAGCAGCAGCGGGAACGTGCCGAGCAGGAGCGGGAGCGGCAGGCGCGCCTCGCCGAGGAGAAGCTCCGGCGGGAGGAGGAGGCGGCCCGGATCCGGGCCGAGGAGGAGGCGCGGAAGAAGGCCGTCTACACGAACAAGTCGTTCGGAGGCTACCTGCAGAAGGTGGAGAAGAAGACGGGGAAGAAGCTGACGGAGCGAGAGAAAAAGACCAAGATCCTGATGGAGAGGAGGAAGCCGCTGAACATGGAGCACCTGAACCAGGACAAGCTGGTGGAGAAAGCGCACCACCTCTGGGACTACATGCACCAGCTGTACGCAGAGAAGTTCCAGCTCAACGAGAAGCTCAAGAGGCAGCGCTACGACATCTACGTCCTCCGCAACCGCGTCAGCGACCACCAGAGGGGCTCCAAGGTCTCCAAGGCAACCCGCTCCGCCAAGGGCAAATCCGGTGTTCTCTTGCTCTGCACTCCACCAATTGAGAAAACTTCCTCGTTCACGGTGTTGAGAAGATCAGGTGGAGGGATGAGCAAGGCCAGGCGGTCCACCCAGCCAGCTGTGCCCAGAGTCACCCGCAGTTCCTGCACCCTGGCCAGGCAGGCCGAGTCACCGGGGGCCCAGGCTGCTCTGGGAGGGGTAGGCCCGCGGAGGGGGAGGCCCACTGACTCTGCCCTAGCCCAGGACCTCAGTCTGATGAGTGTGAGTgagcaggaagtgacatcatcacGGAAAGGAAGGCCAAAGGCTCCTGCTGGCTCAAAGCTGGGTGTGACGCCCCCGTTCCACACAGGCCTTGGGCCTGTAGCTCAGCTGATGAAGTCGGGACGCTGCAGGAACATCGTGGTGGTGGCGGGGGCCGGGATCAGCACCCCCAGCGGGATCCCCGACTTCAGGACGCCTGGGACAGGGTTGTATGCCAACCTGGAGAGGTACAACATCCCCTACCCAGAGGCTGTGTTTAACATCGACTACTTCTCCCAAGACCCTCGGCCCTTCTTCTCCCTGGCTAAGGAGCTGTACCCGGGACACCACCGTCCCAACTACATCCACTACTTCATCCACACGCTACACCTGAGAGGCCAGCTACTGCGAATCTACACACAGAACATCGATGGTCTGGAGAAGATGTGTGGGATCCCAGAGGAGAAGCTGGTGGAGGCTCATGGGAGTTTTGCCACTGCTTCCTGTCACCTGTGCTACACCCCGTTCCCAGCACAAGAAGCCAAGAGTGCCATAATGAACGACAGCATTCCAATATGCTCCTTCTGCCAGGGCACAGTCAAACCCGATATTGTGTTTTTCGGAGAGGATCTTCCCCAGAAATACTTCCTGAGCTCTACAGACTTCCCCAAAGCAGACCTCCTTATTATCATGGGTACATCTCTGCAGATCGAGCCGTTTGCGAGCCTTGTGGACACAGTGAGGGCCACGACTCCTCGGCTCCTGATGAACAGGGGCCCCGTGGGGCCCTTCCTGTGCTCGCCCCTGCGGCGCAGAGACTACATGGAGCTGGGCGATCTGGAGAACACCGTCAGGAGGCTCGCCCAATCGCTGGGCTGGGATCGTCAGATACAGGCCCTGATCTCCGCCCACGAGTGCACgGTTACCCCTCTGGGTCCAGCCGCTCTTCTCTCTGTAAGAGGTGAGATCCAGCAGGAAAAGGGCGGAGCCACAGAGACCAGACCCAGGGAGCCAGGACCAATCAGCAGTGAGGAAAGTGACTCTTCAGAGACGGACAGCAGAGAACGCTCACATTAA

Transcript

SKAU_T00042150

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00992	Troponin	Troponin	Family	Interproscan
PF02146	SIR2	Sir2 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001978	Family	Troponin	Interproscan
IPR003000	Family	Sirtuin family	Interproscan
IPR026590	Domain	Sirtuin family, catalytic core domain	Interproscan
IPR026591	Homologous_superfamily	Sirtuin, catalytic core small domain superfamily	Interproscan
IPR027707	Family	Troponin T	Interproscan
IPR029035	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan
IPR038077	Homologous_superfamily	Troponin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11521	TROPONIN T	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005523	Molecular Function	tropomyosin binding	Interproscan
GO:0005861	Cellular Component	troponin complex	Interproscan
GO:0006936	Biological Process	muscle contraction	Interproscan
GO:0006937	Biological Process	regulation of muscle contraction	Interproscan
GO:0030172	Molecular Function	troponin C binding	Interproscan
GO:0031013	Molecular Function	troponin I binding	Interproscan
GO:0045214	Biological Process	sarcomere organization	Interproscan
GO:0060048	Biological Process	cardiac muscle contraction	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-