Detailed information of SKAU_T00037480 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T00037480NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1CM056376.1136106549136180689+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Transcription Factors Familyzf-NF-X1

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00027cNMP_bindingCyclic nucleotide-binding domainDomainInterproscan
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF00089TrypsinTrypsinDomainInterproscan
PF00520Ion_transIon transport proteinFamilyInterproscan
PF01392FzFz domainDomainInterproscan
PF01422zf-NF-X1NF-X1 type zinc fingerFamilyInterproscan
PF16526CLZC-terminal leucine zipper domain of cyclic nucleotide-gated channels Coiled-coilInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000595DomainCyclic nucleotide-binding domainInterproscan
IPR000967DomainZinc finger, NF-X1-typeInterproscan
IPR001254DomainSerine proteases, trypsin domainInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR005821DomainIon transport domainInterproscan
IPR009003Homologous_superfamilyPeptidase S1, PA clanInterproscan
IPR014710Homologous_superfamilyRmlC-like jelly roll foldInterproscan
IPR017448DomainSRCR-like domainInterproscan
IPR018488Conserved_siteCyclic nucleotide-binding, conserved siteInterproscan
IPR018490Homologous_superfamilyCyclic nucleotide-binding domain superfamilyInterproscan
IPR020067DomainFrizzled domainInterproscan
IPR023415Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR032406DomainCyclic nucleotide-gated channel, C-terminal leucine zipper domainInterproscan
IPR033116Active_siteSerine proteases, trypsin family, serine active siteInterproscan
IPR034078FamilyTranscription factor NFX1 familyInterproscan
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR036772Homologous_superfamilySRCR-like domain superfamilyInterproscan
IPR036790Homologous_superfamilyFrizzled cysteine-rich domain superfamilyInterproscan
IPR041763DomainCorin, cysteine-rich domain 2Interproscan
IPR043504Homologous_superfamilyPeptidase S1, PA clan, chymotrypsin-like foldInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12360NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0004252Molecular Functionserine-type endopeptidase activityInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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