Gene detail

Detailed information of SKAU_T00031600 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00031600	PRE-MRNA-PROCESSING FACTOR 19	CM056376.1	114423972	114454055	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00031600

ATGTCTTTGGTCTGTGCAATCTCAAACGAGGTGCCGGAGCATCCCTGCGTGTCCCCCGTTTCCAACCAAGTTTTTGAACGCCGTCTCATTGAGAAGTACATCGCTGAGAATGGGGCCGACCCGATTACCGGCCAGCCGCTGTCGGAGGAGCAACTTATCGACATCAAGGTGTCGCACCCGATCCGACCCAAGGCTCCGTCTGCCACAAGCATTCCTGCGATCCTCAAAGCGCTGCAGGACGAGTGGGATGCAGTGATGCTGCACAGTTTCACGCTGAGGCAGCAGTTGCAGACGACACGGCAGGAGCTCTCGCACGCTCTGTATCAGCACGACGCTGCCTGCAGGGTCATCGCCCGTCTCACCAAGGAGGTGACCGCCGCCCGCGaggCTCTGGCCACTCTGAAGCCCCAGGCAGGGTTGGTTGTTCCTCAGGCTCTTCCTGTGTCTCAGCCGGCTGCTGCAggcgctggaggagagCCCATGGAGGTCAGTGAGCAAGTGGGAATGACGGCTGAGGTGGTGCAAAAGcTGCAAGATAAGGCCACTGTGCTTACTACGGAGAGGAAGAAGAGGGGTAAGTCTGTCCCTGAGGAGCTGGTGAGGGCTGAGGACCTCAGTAAGTACAGGCAGGTGGCGTCTCATGCTGGCCTCCACAGCGCCAGTGTGCCTGGAATCCTCTCTCTGGACCTGTGCTCTACAGACACCAACAAAGTCCTCACAGGTGGGGCAGATAAGAATGTGGTGGTGTTTGATAAGAGAGAGGAGCAGATTGTGGCCACGCTGAAGGGCCACACTAAGAAAGTCACCTCTGTCATCTACCACCCCTCACAGTCTGTGGTGTTCTCCGCTTCTCCTGACAGCAGTATCAGGGTGTGGTCAGTCACAGGTGGGAACTGTGTCCAGGTGATCCGCGCCCACGAGGCGGGTGTGACCGGACTGTCTCTCCACGCCACCGGAGACTACCTGCTCAGTGCCTCCGAGGACCAGtaTTGGGCGTTCTCTGATGTCCAGACAGGCCGCGTGCTGACCAAGGTGACTGATGAAACTGCAGGCTGTGcTCTGACCTGTGCTCAGTTCCACCCTGACGGGTTGATTTTCGGGACGGGCACGGCTGATTCTCAGATTAAGATCTGGGACCTGAAGGAGCGCACCAACGTGGCCAACTTCCCTGGCCACTCAGGCCCTGTCACCGCCATCGCCTTCTCTGAGAATGGCTACTACCTGGCCACAGGTGCTCAGGATTGCTCTCTGAAACTGTGGGATTTGAGGAAGCTGAAGAACTTCAAGACCATTTCTCTCGACAGTAACTATGAGGTGAAGTCACTGGTGTTTGACCAGAGTGGGACGTACCTGGCGGTTGGTGGTTCTGACATCCGGGTTTACATCTGCAAGCAGTGGTCTGAGGTCCTCAATTTCACTGAGCATTCTGGGCTTGTGACGGGCGTGGCCTTCGGTGAGCATGCTCAGTTCCTCACCTCGGCAGGCATGGACAGAAGCCTGAAGTTCTACAGCCTAGTCTATCCAAGCAATCCtcggagagagaagagggaggtTAAAATGGGTGCGCTGTTTCGCAGTGAGGAGGTGTGTCTTGTGCAGCTTTTTCTCCAATCAGGATCCGCTTACGACTGTGTCAGCGAACTGGGAGAGCTGGGATTGGTTGAATTCAGAGATcTGAATCCAAACGTCAACGCGTTTCAAAGAAAGTTTGTGGGTGAGGTGAGAAGATGCGAGGAGATGGAGAAGACTTTCTCCATCCTGGAGCAGGAGATTAACCGGTCCCTGTCGCCCCCCCTGGAGGGGCCGCTCCCACCCCCTTGCCCCGCCCCATCGGCGCCCCAGCCCAGAGAGCTGCTCACCATAgaggaggagagcgagagacTGGCGAGCGAGCTGAaagagGTTTCTCGGAACCGAGACAGCCTCCAGGCACAGCTGACCCAGCTCAGCCAGTACAGAGGAGTGCTTACACAGACACACTCCCTTACGGCCTCAGAGgccccgccccccaccctGGAATCTTCAGGCTTATTGGACAACAGACAGGACATCCGACTCAGTTTTGTGGCGGGTGTGGTCCACCCTTGGAAAGCCCCAGCCTTTGAACGGTTGCTATGGCGAGCTTGCCGTGGTTACATCATTGTGGATTTTCGGGAGATGGAAGAGAAGCTGGAGCTTCCAGATACTGATGAGATGGTGCAGTGGACGGTTTTCCTCATCTCCTATTGGGGGGACCAGATTGGCCAGAAGGTGAAGAAGATCTGTGATTGcttccacacacacacctttgtgtACCCAGAGAGCTCGGCAGAGAGGACGGAGATTCTGCAGGGGTTGGTGGGCAGGATCGAAGACATCAAAACGGTTCTGTCTCAGACGGAGCAGTACCTGCAGCAGCTGCTGGCCCGTGCTGTGGCCGTCCTGCCGCAGTGGAAGGTCCGGGTCCAGAAGAGCAAGGCGGTCCAGATGGTTCTGAACCTCTGCAGCCCCTCTGTCACCGACAAGTGCCTGATCGCCGAGGCCTGGTGTCCTGTCAACCAGCTGCCTGTTCTACAGGGCGCCCTGAGAGAGGGGgcgAGGAAGAGTGGTAGTGGGGTGGAGTCCTTCTACAACCGTCTCCCGTCCCCCACTGCACCCCCCACCCTCTTCACCACTAACTCCTTCACCGCTGGATTCCAGAGCATTGTGGATGCGTATGGCGTGGCTAGCTACAGAGAGGTTAACCCCAGGTAA

Transcript

SKAU_T00031600

GATTTCTCCCCGTACAAGGCGGACTTTGCGAAGCAGAAACTGTCCCAGCATGCAGTGGATGTCGATGCAGCAGCGTGTGTACGACCAGAGGCGGAAAACAGTTTCAAAATTGGCTAAACAAAACAAGTAttaagtagctagctagattTTGCTAACTGTATTTGAAATAATACCCTTAAACATCAAAGGGTAGAAACGGTTCTGTTCTTTAGGTATTTTACGAGCGTATACAGACAATTATACGGACGGTGATTCACGATGTCTTTGGTCTGTGCAATCTCAAACGAGGTGCCGGAGCATCCCTGCGTGTCCCCCGTTTCCAACCAAGTTTTTGAACGCCGTCTCATTGAGAAGTACATCGCTGAGAATGGGGCCGACCCGATTACCGGCCAGCCGCTGTCGGAGGAGCAACTTATCGACATCAAGGTGTCGCACCCGATCCGACCCAAGGCTCCGTCTGCCACAAGCATTCCTGCGATCCTCAAAGCGCTGCAGGACGAGTGGGATGCAGTGATGCTGCACAGTTTCACGCTGAGGCAGCAGTTGCAGACGACACGGCAGGAGCTCTCGCACGCTCTGTATCAGCACGACGCTGCCTGCAGGGTCATCGCCCGTCTCACCAAGGAGGTGACCGCCGCCCGCGaggCTCTGGCCACTCTGAAGCCCCAGGCAGGGTTGGTTGTTCCTCAGGCTCTTCCTGTGTCTCAGCCGGCTGCTGCAggcgctggaggagagCCCATGGAGGTCAGTGAGCAAGTGGGAATGACGGCTGAGGTGGTGCAAAAGcTGCAAGATAAGGCCACTGTGCTTACTACGGAGAGGAAGAAGAGGGGTAAGTCTGTCCCTGAGGAGCTGGTGAGGGCTGAGGACCTCAGTAAGTACAGGCAGGTGGCGTCTCATGCTGGCCTCCACAGCGCCAGTGTGCCTGGAATCCTCTCTCTGGACCTGTGCTCTACAGACACCAACAAAGTCCTCACAGGTGGGGCAGATAAGAATGTGGTGGTGTTTGATAAGAGAGAGGAGCAGATTGTGGCCACGCTGAAGGGCCACACTAAGAAAGTCACCTCTGTCATCTACCACCCCTCACAGTCTGTGGTGTTCTCCGCTTCTCCTGACAGCAGTATCAGGGTGTGGTCAGTCACAGGTGGGAACTGTGTCCAGGTGATCCGCGCCCACGAGGCGGGTGTGACCGGACTGTCTCTCCACGCCACCGGAGACTACCTGCTCAGTGCCTCCGAGGACCAGtaTTGGGCGTTCTCTGATGTCCAGACAGGCCGCGTGCTGACCAAGGTGACTGATGAAACTGCAGGCTGTGcTCTGACCTGTGCTCAGTTCCACCCTGACGGGTTGATTTTCGGGACGGGCACGGCTGATTCTCAGATTAAGATCTGGGACCTGAAGGAGCGCACCAACGTGGCCAACTTCCCTGGCCACTCAGGCCCTGTCACCGCCATCGCCTTCTCTGAGAATGGCTACTACCTGGCCACAGGTGCTCAGGATTGCTCTCTGAAACTGTGGGATTTGAGGAAGCTGAAGAACTTCAAGACCATTTCTCTCGACAGTAACTATGAGGTGAAGTCACTGGTGTTTGACCAGAGTGGGACGTACCTGGCGGTTGGTGGTTCTGACATCCGGGTTTACATCTGCAAGCAGTGGTCTGAGGTCCTCAATTTCACTGAGCATTCTGGGCTTGTGACGGGCGTGGCCTTCGGTGAGCATGCTCAGTTCCTCACCTCGGCAGGCATGGACAGAAGCCTGAAGTTCTACAGCCTAGTCTATCCAAGCAATCCtcggagagagaagagggaggtTAAAATGGGTGCGCTGTTTCGCAGTGAGGAGGTGTGTCTTGTGCAGCTTTTTCTCCAATCAGGATCCGCTTACGACTGTGTCAGCGAACTGGGAGAGCTGGGATTGGTTGAATTCAGAGATcTGAATCCAAACGTCAACGCGTTTCAAAGAAAGTTTGTGGGTGAGGTGAGAAGATGCGAGGAGATGGAGAAGACTTTCTCCATCCTGGAGCAGGAGATTAACCGGTCCCTGTCGCCCCCCCTGGAGGGGCCGCTCCCACCCCCTTGCCCCGCCCCATCGGCGCCCCAGCCCAGAGAGCTGCTCACCATAgaggaggagagcgagagacTGGCGAGCGAGCTGAaagagGTTTCTCGGAACCGAGACAGCCTCCAGGCACAGCTGACCCAGCTCAGCCAGTACAGAGGAGTGCTTACACAGACACACTCCCTTACGGCCTCAGAGgccccgccccccaccctGGAATCTTCAGGCTTATTGGACAACAGACAGGACATCCGACTCAGTTTTGTGGCGGGTGTGGTCCACCCTTGGAAAGCCCCAGCCTTTGAACGGTTGCTATGGCGAGCTTGCCGTGGTTACATCATTGTGGATTTTCGGGAGATGGAAGAGAAGCTGGAGCTTCCAGATACTGATGAGATGGTGCAGTGGACGGTTTTCCTCATCTCCTATTGGGGGGACCAGATTGGCCAGAAGGTGAAGAAGATCTGTGATTGcttccacacacacacctttgtgtACCCAGAGAGCTCGGCAGAGAGGACGGAGATTCTGCAGGGGTTGGTGGGCAGGATCGAAGACATCAAAACGGTTCTGTCTCAGACGGAGCAGTACCTGCAGCAGCTGCTGGCCCGTGCTGTGGCCGTCCTGCCGCAGTGGAAGGTCCGGGTCCAGAAGAGCAAGGCGGTCCAGATGGTTCTGAACCTCTGCAGCCCCTCTGTCACCGACAAGTGCCTGATCGCCGAGGCCTGGTGTCCTGTCAACCAGCTGCCTGTTCTACAGGGCGCCCTGAGAGAGGGGgcgAGGAAGAGTGGTAGTGGGGTGGAGTCCTTCTACAACCGTCTCCCGTCCCCCACTGCACCCCCCACCCTCTTCACCACTAACTCCTTCACCGCTGGATTCCAGAGCATTGTGGATGCGTATGGCGTGGCTAGCTACAGAGAGGTTAACCCCAGGTAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 activity RING\|U-box
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF01496	V_ATPase_I	V-type ATPase 116kDa subunit family	Family	Interproscan
PF04564	U-box	U-box domain	Domain	Interproscan
PF08606	Prp19	Prp19/Pso4-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR002490	Family	V-type ATPase, V0 complex, 116kDa subunit family	Interproscan
IPR003613	Domain	U-box domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013915	Domain	Pre-mRNA-splicing factor 19	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR038959	Family	Pre-mRNA-processing factor 19	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43995	PRE-MRNA-PROCESSING FACTOR 19	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000974	Cellular Component	Prp19 complex	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0033179	Cellular Component	proton-transporting V-type ATPase, V0 domain	Interproscan
GO:0046961	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071006	Cellular Component	U2-type catalytic step 1 spliceosome	Interproscan
GO:1902600	Biological Process	proton transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-