Gene detail

Detailed information of SKAU_T00017870 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00017870	SNF2/RAD54 HELICASE FAMILY	CM056376.1	52900534	52953523	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00017870

AGCAAGGCGAATGACACCGGTTTATATCGCTAATTGGTTACAGCTAACAGTTAACTTAGTTACCTAACGTATTGCATGTTCTTGTCAGGTGGTAACGTTCACTTAAACCATGATTTATTTGCTAATGTTGCCTGATTATCTAGCTTTTCGCGTCGACTGGCGTAACTTATAGCACAAGTCTCGGTAAAATTAACTTGTAAATGTGCTCATATTCAGTCTTCTTGAGAAGTCGCCGTGTGCAGGCgtaatatttagctagctaacaacgtTAAGTTagttgactaacgttagctagcctatctATATGTTATTTTATTGAGTTTCGTTTTACAATGTACCCTAACTCCTGTAATGAAACGTTAGCCAGTGAGCCAGCTGCTTCGACAAGAAGAGGcgttatttttactgtaacgttaacgttacctctaTAGTTAGGAATAATACAATGTCATAGAAACATACCTCAGTTTGTATAACGGCTACAAGGAAGTCATATTTACTGCCAACAATGCTGAAAATCCTCTGCCAAGAAAATTATAAAATGTGGAAGATTCATTTGAACTTTATATCTACACCATTTTGAGGCCAGACGTTAATTGAACAGGGTTCCATTATGTTTGTGAGAACTGAATGAACTGTCTCGTGTTCTTCGCAGTACCATTTGGGAAAAAGCAAGAGAGTGAGGACAAGTTGGAGGAGAAGGACGAAGACTCAGGAGACGATGCTGTTACTGGTGACTACATACCTGATAAGCTAGTGAGAAAAATAAAGACGCCTGGACGGTTGCGTGGAATGGTGTCGGAGACACGGGAGTTTGGATATTCAGACCCAAAAGAGGACGGGGAGACTGAAGAGAAGGTGTCCAAACTGCAAGAGATTTTCCCACAGAGAGATAGGAAGCAATTACTGGAGGTCGTCCAAAGCACAAGCACTCTGGACGGTGCTGTAGCCTCCTGTCTCATGATGTTCGGCGATGAAGGTCCAGACTTGTCTCGGAAGAGGAAGCTGGACGGATCCAGCTGCGGCTCGCAGGACAGCGACGTGGTTCAGCCCATTAAGAGGCAGCGGTCGTCTGTGGCCGACGACTCTGCCGAGGAGGGGACGGAGCCAAACTGGGAGAAGCAGGAAGCCATGGTGAGGAGACTGCAGCGGAAGTTCCCCAACCTGGACAAGGAGGAGCTACGCGCCGTGCTTCAGGAACACGACTGGGACTGTGGCGATGCTCTGGAAGTGCTGCGTTTGTTTTCAGATCAAGATGAGGAGTCTAGCTCCACAGATACCAGAGGAAAGAAGCCTAAAGTAGCTCAAACCTCAAGCTATGCCAGACCTCCAAAAGACACCAAACAAACAAGCAACCACAGGGATGGGCGAGCAGGCAATTCAAAAAACAGCCAATCATCTGGGTCCTCGGGGTGGCTGACCTCCAAAAGCGCCTCGAAGCCTGCTCTCACCGCGATCCGCAAACCGGCGGCGAAAGCCCAGAACGGGATCAGTGAGGCCAAGACGCAGGCGGCCGAGAGGAAGAGGCAGCGGCGGGCATCAGAGAAGCAGCAGGACTGCAGCTCCGAGGACGAGGACTCTGTCAGCAGCGAGTTCGAGGGCTCCTCTGAGGACCTGGACTCGGACCACGAGGATGGGGTGGACCCCAAACTGAAAGGCCGGATCCTGGGGTTCTTACAGGAGGCATCGGTGGACGAGCTGTCGCTCATCAGGGGCTGCTCGGTGAAGAAAGCCCAGAAGATTGTGGATCTGCGACCTTTCGAGGCATGGCAGGACATGAAGGAGATGTTCCACAAGGGGAACGGCCTGTCCATGGAGCTGGTGTGGGGCTGCCGCATCGTGCTGAAGGAGCGGGAGGCGGTGCTCGGCCTGATGGGCAAGTGTGAGACCATCGCCCGCAGGATGACGGAGGATGTGACCCGGGTGATTGAGAGGGGCGTGGGCTCCATGAAGCAACCCTCCATCCTCAACAGCAGGCTCCAGCTGAAGCCATACCAGCTGATTGGGCTGAACTGGCTGGTTCTGCTGCACCAACACAAGCTGAGTGGGATCCTGGCGGACGAGATGGGTTTGGGAAAGACAATCCAGGCCATCTCCTTTCTCGCCAAACTGTACCAGGAGGGCACCGTCGGCCCTCATCTCATCACTGTGCCCTCCTCTACCCTCGATAACTGGGTTAGGGAGCTGAAGCTCTGGTGCCCCAGTTTGAAGGTGCTGGTGTACTATGGGTCCACGGAAGACCGCCGGTACCTGCGCCACGACATTCTCAACAAGGAGGTGGAATTCAATATAATTGTGACCACGTACAGCATGGCGATTGGAAACGAGAACGACCGCAGCCTCTTCCGCAAGCTCAAGCTGCAGTACGCCGTGTTCGACGAGGGCCACATGCTGAAGAACATGAACTCGCTGCGCTACCGCCACCCTCATGTCCATCAACGCCAAGTACCGCGTGCTGCTCACTGGAACCCCCCTGCAGAACAACCTGCTGGAGCTCATGTCCCTGCTCAACTTCATCATGCCCACCATGTTCTCCAGCAGCACCTCTCAGATCACCAAGATGTTCTCTATGAAATCTTCAGAGGAAAAGAGCAGCTTTGAGCAGGACAGGATCGCTCACGCCAAACTCATCATGAAGCCGTtcatcctgaggaggctgaaGAGCCAGGTGCTGAAGCAGCTGCCGGAGAAGGAGGAGCAGTTGGAGTTCTGTCCCATGAGTGAGAGGCAGCAGGAGCTCTACTCCACCCTGTTCCAGAGGCTGAAGCGCTCGTCTAACACAGAGAagcgGAAACTTTCAAATGTGATGATGGCGCTGAGGAAGATGGCGAATCACCCCCTGCTGCACAGGCAGTACTACACCACTGAGAAACTGGCCACCATGAGTCGCCTCATGCTCAAGGTCAAAGCAGAGCCTACATTCACAAAAATCCAAACGCATCACACCTCAACAAGCCGTAGAAGACGCATAGATAATCAACCGAGCAAATGGAATGTAACCGGACAACCGTATAATTGAGATCGAGGCTCCGTTATCGGAGCCCACGCACCGCGACGCCAACCCTGCCCTCATCCAGGAGGACATGGAGGTGATGTCGGACTTCGAGCTGCACCGGCTCTGCCAGCAGTACCCCGTCCTTGGGGGCCACCAGCTGGGTAGTGAGAGGCTGCTGGACTCGGGCAAGTTCAGCCTGCTCACGACGCTGCTCGCATCCCTCAAGGACAAGGGTGACCGGGTGGTTCTCTTCAGCCAGTTCACCATGGTGCTGGACATTGTGGAGGTCCTGCTGCAACACCTGAGCCACCGCTATGTGCGATTGGACGGCTCCACTCCCATGGCTGACAGAATCGTCTTGATCGATGAGTTCAACACGGATCCCGACATCTTTGTGTTCCTCATCTCCACCCGGGCCGGGGGCCTGGGCATCAATCTGACTTCCGCCAATGTGGTCATCCTGCATGACATCGACTGCAACCCGTACAACGACAAGCAGGCAGAGGACCGCTGCCACCGTGTGGGCCAGACCAGGACCGTAAAGGTGATTAAGCTGATCAGCAGGGACTCCATAGAGGACTGCATGCTGCGCCTGGGTCAGAAGAAGCTGAAGCTGGAGCAGGATATGACTGCAGCAGACGAAGGTGACGAGGGCTCAATGCCCGAGGATATGGCCTCCCTGCTAAAGGCCTCTCTGGGACTGTAAGCTCTCCCCTACCTCCCCTCACCCCAACCACTACGAGTACTGTATCATCCTCAAACCCTGACCCCCCTCCTGGCCTGGACCACATTCCGGGAGACGTCTCCCACCCAACAGGTGGACCGGGACCAGCTGTTGGGATGCCCCTATCCAAGGACACACAGCGTGCATGCTGCCTGAACAGCAGAAGTGCGAGCACGCTACTCAGGAGAAGGAACTGTGCCGGGCGACACAGGCGTAAGGGAAGgggatgtttgtgtttgtgacgTGATTGTTGATGTTAAACATCTTGTtggtgaaagtttttttttatttttattttttatcgttTGTCACTTCTTTCCTGTGCTGCTGAAACAAAGTTTTGAGAGTCTAAAACAAATAAAG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|CUE

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF02845	CUE	CUE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR003892	Domain	Ubiquitin system component CUE	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10799	SNF2/RAD54 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-