Gene detail

Detailed information of SKAU_T00014120 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00014120	UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10	CM056376.1	40988327	41014426	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00014120

ATGATAGCTTTCCTAAAGGTCATAAATAAGGTGTATGCTGGACCAAACAGGCATAACTGCAgcagtaatgtaactcaaacagTGGACACCACCCCTCAGATCTCGTCTGAGTGGCAAACCCGCATCTATCCAGGTTGCAGAGACGAGAGCGACGGTGGCGCAGAATGTCTGGGTCACATGGCTTTCTCCTCACTGGAGATGACGGGAGAGAAGGGAAAGGGGGCGGGGGCTCTCCACCTGGACGAGGAGACCTTCCGCCGCGCCTGCCGCCGTTTCGTCCAGCACTCCCACGCCCTCAATGATGGATGGAGCTGGGAGGAGGTGAAGGGGTCCGATGAAGGCTACATGAGGAAGTCCGTTCTGAGCCCGGGGGGAAGCGCACCTCGCCCTGCCCGAGATGGAGGGAGTGGACCAGGGGAGGACTTGGACATcctgggacagagagaggggcaggAGCTAGAGGATGAGGACGAGGAGCAGGCTGGCAGTGATGAAGAGCGCGTGGTGTCGGAGACGTCCTCGCCGATCCGCTATGAGTACCATGTTCTGTACTCCTGCAGTTACCAGGCCCCTGTGTTATACTTCAGGGCGTCCACTCTAGATGGCCGTCCTCTGTCCCTGGAGGACATGTGGGACAACGTCCACCCGAACTACAGACAGCGTCTACTGCAGGGGCCCTGGGACACTATTACCCAGCAGGAACACCCTCTGATTGGCCAGTCCTTCTTTGTACTCCATCCTTGTCGAACACAGGACTTAATGAGGCCTATATTAGCAGCAGCGAGTGCAGAGAATAGGAGTCTGAATTACATAGTTTCCTGGTTGAGTTCGGTGGGGCCAGTGGCGGCCCTCACGGTCCCCCTGAGTTATGCTCATATAGGAGCAGCTCCAGACCTGCAGCCCACTGTGGTGTTTTCTGCAGACAGATTGATTCTTGGGGTCACCGGGCGCGTGCTGGACACAATCGCTGCGGGGTACATCAGCGAAGAGGACCCCAGCTTACAACGTATGCTGGTCACCGATCAGAAACAAATAGACAACACTCCCCTGTCATGTGACTGATTTCGGACACTGGAACACTGCGTGTGCCTGTCTCCTTGTTTCCCGAGCACAGTGCTCTCGAATGGCGTGAACTGAGCTTGTTTTTTtgatgcaaaaaaatatataaaccccGTGCTTATAGTTTGCAAGAAAACTCAAGTGACTTAACAGTGCTGTTAAatcatttctaataaaatatcaaCCCAAAATTGAATTCCTCAAACTATGTCCATGTCTGTTTTTAGGTGTTTGTGTCACGCAGGAAACAAGTCTTTAAATCATAAATACAATTTGGCAAGACATGCATGTTATAATTAGTCTAAATCTGTCTTTGTACATACCATGCAGACttatttataatggtatttgCTGTTCTGCATGTCATGAGATATTTTTCATTGCAAATTGAATAAAATGCCTAGGAACAAACGATTGTGGGCAAATACAGCAGAAAATCTCTACTGACACCTAGTGGTTATAGAGCAACACTGCACGCGGAATCTAACTCATGACCATAAATGGGACAATGTTTTCCTACGTAATTGTGAGAAGGATTAACAACCTGGGCCCTGTTTCcaaaaaggatcttagataaagatcatattaggctattttttttttttttttcataatttgtttttgtctttctccctctatttttatcttttttatgcAATGTctgtacatttttataattttaatttaaaaaatgtataaagcacaaacacaaaacactcgaTGATAATCTTAACACTAAGatacttttgggaaacggggcacACTGGATCAGAGTTCAACAAGTTCCCCACTCCACACGTCATGTAAATTAATGTCACATTTAAGACACCAAGGATTTTGTAATGCATTAGCCACTTGCAAAACTGCAATGCATTTCATGAAGTCATTGCACTAAAATGGTACACCCAGTGAGTATGTGAATGTATATGTAGATCACTTCGATGCTAAAGGAGTATTGGGATTTAATTGTTCCTTTAGGAAACAATGAAACAATAGAAATAAACATAACCTGac

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03987	Autophagy_act_C	Autophagocytosis associated protein, active-site domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007135	Family	Ubiquitin-like-conjugating enzyme Atg3/Atg10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14957	UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0006497	Biological Process	protein lipidation	Interproscan
GO:0016236	Biological Process	macroautophagy	Interproscan
GO:0019777	Molecular Function	Atg12 transferase activity	Interproscan
GO:0019787	Molecular Function	ubiquitin-like protein transferase activity	Interproscan
GO:0032446	Biological Process	protein modification by small protein conjugation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-