Gene detail

Detailed information of SKAU_T00010390 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00010390	ZINC FINGER PROTEIN DZIP1	CM056376.1	28588112	28614772	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00010390

AAGAAGCTGTGTCTCGGAAGTCCTGACATGCGCAGTGCTTTGACTGCAGCTTACGTATTGACTGCCATGTATCCAGAGTGAACACCAGCAGATTTTAGATTGCCATGGCACAGATACAGCGGAACTGTTGTaccccatttcttttttttagtcCTGTGTTTCTCGGCGACAGAATGGACAAGGGCCTAAGATATTGCAGTGTTACGCGGTAAACGAGTTACTCTAATACGCTGGGGAAAAACGGCTCTGGAAAGACGTGTAAACAGTGGTCCGCAACTTTGTTGTGGCGAAGGCAGTAacggcaggagaacaggaactgcaTTGTCGAGAGAAGGAACTTGCAGCCATGGAAGATTTCGGATCAGCGCTGGAGAAAAATGCTGCGGACCTGACGGTCATGGACGTGTACGATATCGCGGCAGTCGTGGGGCAGGAGTTCGAGCGAATTATCGATCAGTATGGGTGTGAAGCGCTGTCACGGCTGATGCCAAAAGTGGTCCGGGTTCTGGAGATCCTGGAGGTCCTCGTCAGCCGGAATAGCATTAGCCCGGAGACCGAGGAACTGCGTCTGGAGTTGGAAAGGCTGCGCATGGAACGGATGGACCGattggaaaaagaaaagaaacaccaAAAGGAGCTGGAGCTGGTGGAGGATGTGTGGAGAGGAGAGGCCCAGGATCTGCTTTCACAGATTGCCCAGCTGCAGGCTGAGAATAAGAACCTCCTGACCAACCTGTCGCTGCAGGACTGCCCCACCTTAGAGCAGGAGCTGCAGAGACAGGAAGGTGTGTCGGAGAGGGAGCGGCAGGTGATGAAGAAGCTGAAGGAGGTGGTGGACAAGCAGAGGGACGAGATCCGGGCCAAAGATCGCGAGCTGACACTACGCAATGAGGACATCGAGGCGCTCCAGCAGCAGCAGAGCCGGCTGATGAAGATTAACCAGGACCTGAGGCACAGGATGACGTTGCTGGAGGCCCAGGGCAAGGCCCTGATCCAGCAGAAGGTGGAGCTGGAGGCAGCTGCCCAGGCAAGGCAGCAGGAGCTGGGGGAGCTTCAGCAGGAGGTGGCCAGGCTCCGGGAGCGCCTGCAAGGAGAGCTCCGCCCCAATGGAGAGCCATCACCAGCTCCGCCCCAGCTCTCGCGTGCCCAAACCTCCGATGCACAGAGCTCCCTTTGGGCCGAGTGTGGTGGGGACCCAGAATTCCTGGCGGAGTGCTTTGTGGCGGGACAGGGGCTTTCCCGCTTCCCTGGCCTGGAGGACGGGGCTCCCCACGAGGAGACGGAGGAGAAAGGGGGAGGTTATGGtgatgaggatgaagaggagaaggaggaggcggTGTTGTTATGGGGGGAGTCTGAGGAGGACCCTGCAGAAGAGAAGGGTGCTGTTGACCTGAAAGACCCCAACAGGCCACGCTTCACCCTCCAAGAACTACGGGACGTCCTGCACGAGAGGAACGAGCTCAAAGCCAAAGTGTTCATGTTGCAAGAGGAAATAGCCTATTACAAAAGTGAGGAGCTGGAAGAGGAAATGGGCCCGCCTCTTTCGGTCCCCTCCCCCGCGCCGCGGCCCAACGTCCAGCCTGAGTCAGGGATCAAACGCCTGATCTTTACAGCCATTATGCCGATGGTGGCGGCTGGCCTGCTCGCAGACGACCCCACTTTGCAGCCAATCAGACGGCTCATTTCCTTTGTTTAGCTTCTTCTCCAGGGACAAAAAGCGGAGCTCACAAAATGCGAGATTCAGGGAGAGTGCTGGCATGTGGGCGGAGAAGGACGACGTGTACACCGAGAAAGCCCAGGAGGCTTTGCAGGACTTGTAACCTTGGAAAATAACAGACAGAAACAACaactacaacacacacacgcacacacacacacacacacacacacattacattacaggcatttagcagacgtaccttgtaccttgctcaagggtacaacggcagtgtcctacctgggaatcgaacctgcaacctttcggttacaaggccagttccttaaccattatactacactgctatacTACACACACAGATACCCGTCCAGTCCCTCTGCACCTCTTGCATCACTAACCGCTTCTTCAACCACAAGGAGGACATCTTTACTAGAGAGAGTGACAGGACACTGCCATGCCACCAGGGCATGCTGGTGTACACCATAGActctataaaaatatggacaaagtcactatgacgtcacccattgccttcccacggcctcgtaaaaaccgaattgaagctacGGATGCATTTTTTGCTGCCAGTTCGTGCGtttgctccgtggagctgaagaggactcaacctgtccctctgattggtcctgaacaaatgttaataccctgtccaaacgacacaatattttaaaaaatcagcacatgcagaggcattagatgaaggaaaggcacctattgcaaaaatttattgactgagtattttgaccacattgctgccattgacttggtgaaagacctatactggagccaatcgcagtggcactagtgagcaacggcacaattgccgctcccagcccaaccaggaagtgagcttcaaaatgaaagcccagtcttggccccttggggtgcgtcccaatagtcgaaaaatgccacctttcctcctccactaccactcctctactccgtgcccgggaaacggatctttgtgttttaatctaatatcgctgattacatcttaattacgtattaatgcttacatattaattaatgtctcaacgcaaactgcaatgtcatgtacattggatactgtacatgcaaatacttgtactcaaaacgttcaggcagttttgcatatttccgggtaggagaggagtggtagtgggggagtggaggtggggagtgaagaatattgggacgcacccagggtgtACACTGGCGTTTTCAGCAGTGCCAGCTGACCAGAGTTGTTGATTACTTTTTCTAATTTCCCAGAGCATGGAGGACTGTACCATACTGAACATGGGCATTGCGGAAAGTTTACCTACTACTTAGTACACCTAATAATACTGATATAGGAATGGGAAAAAAGAGCTGCAACTCCCACCTGATTGGGTGGAATTACAGCAGTAGGGAGAATGTCTTTGTGACTTCAGGAACCAGCATTCCGGAACAAAGGGCAGAAGTGCGTTGTGGGTGGATTTAGAGAAATGCTTGAAAGCCTGGGCAGAAAAACAACTCGAGGGGGAGAACACGGCCAGAAACAGGCTTGCGTAGGGCCGTCCACTCTCTGACTCGGATCATACTGTGAGGAGCCAGGTTGTTTTTCATTTCTCTGTCCGTTAAACTCCGTTGTATTACTGCATCAGTGAGCCCACATAATGAGTAACCATGAAGAAAATAAAAGGGGGAGAGCAGAAAGAAGTGATTGTGTGAAAATTGGAGAAAGGATGAAGAAGAAAGGTGAGGAACAGTGGAGGAGACAAAGTTAGTCATGGAGTATCGGAGGAAGAGCCACGGACTGTGGAATAACATGAAGCAGAAGTCCTGTTTGGGAACGCCGTACAGATGTTCAGAGGCAGTTCAGACAGTATTTGTAGTCATATTGAACACAGTTTGCATACCGTATTCATAAAtgtagtagagtattctgggggcaattgtaatggggcaattgcaacaccataaaattgcaccaatctgaaacaagctagagctgagattctatccagcaagctagctagtttcgtgtgttcagggttgggggcaattgtaacaaaaaattgtgttccAATTGacccccgttacaattgcccccagaatactctatattaAGCAATATGAAATGACCAAGTATTCCTGCCCAGTCTCTCTGCATGGTTCTAAGTTCACCTTCGCCCCACTGTGTGGACTCAGTGACCTCTTTACTGATGGTGTATCTTTTATCCAGGTGATAGGTATATGGTGTTTTCAGCTTGAAGACTCAGATCCCCAGTAGTCATGTACTTCCTAACCCTGAACATGAATCAAAACAAAGTATGACTCAAAGCAAAACACCTCATCCACTCCACAATGTGTCTGAAATTATCTGTTCAAACCCACAAAAGACTCAATTTCCCATCATCCCCCATCTTCATTACCGTGGAATCTTCACCAAATGACATTGGAGGAGAAAATAAGTCTTGCGTGCCGTTCTTTACGTGAATATTGACTGCTGGGAGGGTTGGGGGGTGTATATTTATTGTGAAATTGTCAGTTAATTCTTGAAATTCCTTTGGCCTTTTTGCACCAACAGTTATAATTCAGAAGTTTTAAAACTACATTGTATAAATATGTAGCAATGAAATGGAACAGGGTGGAATTAGATTCACAGTAGTTCAATTTTTCTtgaaatttggaatgcccagttgaAATTGTAGGGTTGGGGGCTGCGGGTTGTAAGTTTCAACAGGAAAATAGCTGTGTCCCTAAAGCAATATGCTTCACATGTATGCAGCAGTCCGCAAATAATTGATTATAAATTATGTCTCTATAGTTGAAAGAATGGGATGGCAGACGAGCACTGTGAACAAAATTATGAGAAGAAAATGAAGTGATTTAAAAAGCTGAAAGGGTGTTGCTTTAACCCTTTTAAGTTGTATAATTAAGGCCTCTTTACCTCCTACGGTATCCAGTATTTAGAAAAGGCTCTTGCTGGCAGTTTTTTTCTCCTTTTATAAACCCAGCTTGGCCTTATTTTGAAACATGTATGTGTTGTATAATATACATTATCAAGATTGCCTGACATCCCAGTTAATGTGTAACTTTGCTGCAATTGTCGCAGTGAGATAATGACAATGTTGCTATGACGGTTCAGAAATGTTTGAAGAACATTATGTTTTTGCTTTTCCACACCTGGGGGACAAGCgtgttatttacataattcaaCATAGAATGAGTCTTCCGTTCCCATGCTCTCCTTACAAGTGCTTCAGCTTAACATCGGTGTGGACATTTGTCATATGATTTTAAACGATTGCAGTTTATTCTGTGAGATGTGCCTTggatgtttttatttttccaaataatGAGTATTACTTCCAGCAATAATTGCTCAATAAAATTACCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09744	Jnk-SapK_ap_N	JNK_SAPK-associated protein-1	Family	Interproscan
PF11461	RILP	Rab interacting lysosomal protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019143	Domain	JNK/Rab-associated protein-1, N-terminal	Interproscan
IPR021563	Domain	Rab interacting lysosomal protein, dimerization domain	Interproscan
IPR034743	Domain	RH1 domain	Interproscan
IPR034744	Domain	RH2 domain	Interproscan
IPR051241	Family	DZIP and RILPL	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21502	ZINC FINGER PROTEIN DZIP1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan
GO:0036064	Cellular Component	ciliary basal body	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-