Gene detail

Detailed information of SKAU_T00006900 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00006900	MATRIX METALLOPROTEINASE	CM056376.1	17488499	17516054	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00006900

CTCCAGCTGGAGCACTGGATAGTTAATTTGCCTTCGCAACACGCGTTTCTGGTCTTTTTCTTCCCCCCTGAAActacagagcgagagagagagagctgcccaGCTTGAACAGAGAAGAACTACACATTTGAAGAGAGCTTCATTTTACCCAGCGCATCTATATAGCTTACCCATCCGTTCTGCTCAGAAGCCTCATTTATTGCAGTCGGGAAATTTGTCTTCTGACCTAACTAATCGGGGGTGTTTAAAGGATGAATGCTAACATAATGCATAATGCAAATATTTGTACCTCACGCTGACGATTTTAACTGGAATTCGACTTTTTGTTGAGGAAAAATAGTTTTCACCCTCGGATAGCAACATCCTCAACAGCATCCACAAATATATCCGAAGTTCAGAGGAAGTTCAGAGTCCGCGTGCAACAAGGTTTTTATTTTGTTGCCATGTAGGCTATAGAAATGTGATTACACATGCATTCTATGCGAAGGATTGAGTGATAAAATTCAGTCCTCGGATGTGGCGGGAGTACGTGAACATATGCGGCAAATCAAGTTTTGGAAATGATTGTACTTAATTTGCGGAAGTGGGGATCATCGCGGCAGCGTTGGATAATATACTCTGATATGTTTTTGTTACCAATTCTTTGGCTTTTCTCCGAGACGTTCGCGGCACCCTCGTTGACGGCCGAGCAGATCAACATGGGGGTGGACTGGCTGACCAAGTTTGGGTACCTCCCACCCCCGGACCCTGTGACAGGACAGCTGCAGACCAAGGAGGCTCTGGCCAAAGCCATCAAAGCCATGCAGAAGTATGGGGGATTGGAGGAGACGGGAGTGCtagATGACGAGACCCTGGTGCTGATGAAGACTCCACGCTGCTCCCTGCCAGACGTCTCAGAGCCAGAGTCACATTCAGGCCGGCGGAGACGATCAGTGCTGTCAGTGCCCTCCCAGACCAAGTGGAGCAAAAGACACCTGTCCTGGAGAATACGAAAATTCCCAAAAGAGTCTCACCAGCTGGGCCGGGACACGGTGCGGGCCCTGATGTACTACGCCCTGAAGGTTTGGAGTGACATTTCGCCCCTCAACTTCCACGAGGTGGCAGGCAGCGAGGCAGACATCCAGATCGACTTTACCAAGGATGACCACAATGACGGGTACCCCTTCGATGGACCCGGGGGCACCGTGGCACATGCATTTTTCCCAAGTGACAGGTTCACAGCAGGTGACGCACACTTTGATGACGATGAAGCCTGGACATTCAGGTCACCAGATGCCCATGGGATGGATCTGTTTGCGGTGGCCGTGCACGAGTTCGGTCACGCCATCGGCCTGGCGCACACCTCCTCCATCGAGTCCATCATGCGGCCGTACTACCAGGGCCCGGTGGGAGACCCACTAAAGTACAGCCTCCCCTATGAAGACAAGGTCCGTATCTGGCAGCTCTATGGGGTTCGAGACTCAGTGTCCCACACAGACCGCCCTGATACCTCCCGCAGTGCAGATCCCCCTGTCCTACTGGACCTCCCCGAAAACAGGTCGACTGTCCCGCCGGCTCGTGACGCCCCAGACAGATGCAGCACTCACTTTGATGCTGTGGCCCAGATTCGTGGAGAGGCCTTCTTTTTCAAAGGGAAGTACTTCTGGCGTCTGACTCGAGAGAAGCACCTGGTGTCTCTGCGCCCGGCCCAGATCCATCGGTTCTGGAGGGGCCTGCCCGCCAACCTGGACAGCGTGGACGCCGTGTACGAGCGGCCCGGGGATCACAAGATCGTCTTCTTCAAAGGACTGAAGTACTGGATTTTCAAAGACAACAACGTGGAGGAGGGCTACCCCCGGCCGATCGGTGATTTTGGCCTGCCCGTGGAGGGTGTGGACGGCGCTTTCGTCTGGCTGCACAATGAAAAGACCTACTTCTTCAAGGGCAGCCAGTACTGGCGCTATGATGACCACCTACGACGCATGGACCTGGGCTACCCCAAGGACAGCATGTTGTGGAAGGGAGTCCCTCCACACCTGGATGATGCCATGAGGTGGTCTGACGGTGCCTCCTACTTCTTCAAGGGGAAGGAGTACTGGCGGGTGGTGGGGAGTGCCATGGAGGTGGAGTCAGGGTACCCGCGGCCCATTGGACAGGACTGGCTGCTGTGCGCTGATATGCAGTCTGATTCTCCGGCCCTGGAGGCCAACGGCACGGAGACTCGCTCGCACGGGCAGCGCCACGCCAGCCACGCGGAGAACAACTACGAGGTGTGCTCCTGCACCTCCGACTCAGCCACGGCCCTCTcgctcctcccctccctctcgcCCCTGTGGGGGCTAACCCTCCTCTGGACAGTCACGGTGACTCTCCCTACATCGTCATGATGACGGACGGGGGGTAGAAACTCATGGACACGCAGACAGACAAAAAGAAAATGGAAGAGGATCAGGCTGACTTTTcttttgtgcttttatttttctctttgtACTCTTAGGAAAAAAGGGCTCTGAGAGGGTTCTTTGGCTAGACTCCGTAGAGGAATCCTTTtgagttctttatggaaccctctatggtaggtgtgaaaagtgtgcaaGCTCCcagacaaagaacccttgaactagatagggttcctctacggtgagccttttggaaccctttcttcggAGAGCGTGGCGGTACAGTACAGCCACATGATACACAACCATTTGTGAATACACCCGCATATAGTTATTTTTTTACAGTCAACATAACTGATGTGAACTTTATTATTACCAGTATTATTTATGAAAaaaggtatatacagtatacaataaataaaatcaaagttGTTTCATATTGTGAAGAAATGCAaagtatttttttacttttaaagttTCAGATTGTATGATCTTTGCTAAAACAGTGGATGTATTTATAGTAATGGTACTCCTAATAATAAACCGTTAGAACAATAATTGAACTCCcaggaaaacatttatttttaattgtttgagcCTTTAATATCAGGGGAATTATATAGACATGCTTTTCCATTTCCATAAAAAAACTAAATCCCAGCAGAACTGTGTAACACCTGCTGTCATATGCATTTGCTGTAGAAAGTGAACACAAATGGTCTGCCTCGCAACAGTATGTGGACATCTTTGCTCAGCTTTACTGAACTGAAAAGTGAAAAGCAGATGTCCTTTTTTCATTGGGCCCTAGGAATCAAAACATTGGGTTTGAGCAgatatttgtaaatatttcaATTCTTGTGAAAAACAGCAGAATGTCTTTGAGACAGTCTACAGGAAGTGCACTATGGGTATAGGCATAGGTATCGATATGGCAAAGTCCGCCTCAGGTTTAGTCCTGTGTTTCATGCAGTTTAATACAGTGGGGTGTTCCATTGGATCCTGTATACTCTTAAGGCAGCGACCTCCAAGCCTTTCTCTTTGGGCCCGGTGTGTTCTTATGTCTCTGAGCAGTCTAGCTCTGAAGACAGGTTAATGCAGTTAAGATGTGCTTTGATATTATCTATTGGAAATAATCAACGTGTTTTATATAGATCAACTCTACTCATCTTTTAAAAATCTCAATTTTTAGGGCCCAGCTCTGACAACCTGAGAAACAGCTGTACTGTAAGAGCGGCTTTTATACAATACGAAGACAAATATGGACGTGCAGTGGAatttatttcctctgtcatgctgTTGATACCAACCTGAAGGCCATTTGGAAATATATTCAAAatggaaacaataaaaaaaaactaataaaagaaACAAGGgcacttttttttgtttcattattgCTGCAAAATCTGCAACTGAAATATAGGACGGTATTTGTCACAGTCGGTTTATTGGCTGTTATATACTGGGAAATGGGCATTTTACTGGTGCAGAAAACTCTGTCCCTGACAGTGagatcaaaacaaaacaaacagttgCCTGGGCCACATTCAGGCTGGCTGCTGTTCTACATGATCATTTCACCTCAGTGAAATAAACAAGCTGTAATCAAGGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00045	Hemopexin	Hemopexin	Repeat	Interproscan
PF00413	Peptidase_M10	Matrixin	Domain	Interproscan
PF01471	PG_binding_1	Putative peptidoglycan binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000585	Domain	Hemopexin-like domain	Interproscan
IPR001818	Domain	Peptidase M10, metallopeptidase	Interproscan
IPR002477	Domain	Peptidoglycan binding-like	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR018487	Repeat	Hemopexin-like repeats	Interproscan
IPR021190	Family	Peptidase M10A	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR033739	Domain	Peptidase M10A, catalytic domain	Interproscan
IPR036365	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR036375	Homologous_superfamily	Hemopexin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0030574	Biological Process	collagen catabolic process	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-