Gene detail

Detailed information of SKAU_T00006310 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00006310	PROTEIN PHOSPHATASE 2C	CM056376.1	15295142	15314317	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00006310

CATATGGAAATGTTTAcaaatatttattgatttaaatacttgatttttttttcaacCTGCCTGTTCAAACAGTCAGACCAAACAGAAAAGGGTGATAGTGCCGTCCGCGCCCTCTGCCGGTTGCAAGTGTAAATAACAATCTCCTCGTCCTGTCCGGCAGAGGCCGCAGCTATCAAAATGTGAGCGAGCGTAGCTTGCACTACTGAGCATGCGCAATGTAGTAGACATTATTTGACAACGAGGAACGGACCGTGTCAGTATTTTCATGTCGCTACAGTAGCCAGAAGCTACACTGAGGGCGTGGGAGCCTCAGAACGAGGTATATTGCATATTTTACTGACGGAGAAGTTAACGTTTGCAAAGGACAGACACGTGAAGCTTCGGACTCGCATCTCCACACAGGGGACTTCGCAGTGAGAAACCAGGAGGAACGGACCTCGTGCCCAGGCGTTGGATGAGAGCGGCCGCCAGGCGCGGTGAACGTCAGACGGGATGGGCGCGGAGGCTACAGACGCCCGGCGTTTCCTGGACGAGTTTGTGAAGGAGTTCCCCGAACCGCTGGGCGTGGACGACTCCCTGCCCCTCAGCCCGCTCAGTGGCAAGGTCAGCCCGGACGAGATCCGAGGGGAGAGCCTGGACCTGGCGCTCCGGCTGCTGGCCGCAAGGAATgccccgcctgtcctgagctcgGCCCTGTCCCATGCTGCACTGGTGGAGCTCCTAAAGACTGACCTCACCCCCTACCACCTGCCCCTGGACCCTGAGCAGGACAGTCTGTTACTCCAGTCTGACCCGCTCCAGCGCCTTTTCTTTAATAAGCTACGGGAGATGGAGGACCGCCATGTGGCGCTTGCCGAATTCAACCAGCTCTTCGGGCTGCAGGATGCAGTGCATCGTGGGTACTTTGCAGTGTTTGATGGGCATGGCGGGGTGGACGCGGCTACGTACGCCGCCACTCACCTGCACGTCGTCCTCGGTTACCATGACGACCTGAAGATCGACCCGTCCAGCGTGCTGAAGAGAGCCTTCACACGCACCGACCACATGTTCAGGGAGAAAGCgaagagagagCGTCTGCGTAGTGGCAGTACAGGTGTGGCAGTCATGCTGGCAGGTGATTGGCTACATGTGGCCTGGCTGGGAGACTCCCAGGTGATGCTGGTTCGTCAGGGTGAACCCATCACTCTAATGGAGCCTCACAAACCTGAGAGAGAGGACGAGAAGAAGAGAATCGAGGATCTGGGCGGCTGCATCGCCTTCATGGGATGCTGGCGTGTCAATGGCACTTACGCCGTTTCCAGGGCGATCGGCGACTTCGATCAGAAGCCCTACATCTCCAGCGAGGCGGACTGCTCCTCCGTGCAGCTGAGCGGTGACGAGGACTACGTCCTGCTGGCGTGCGACGGTTTCTTTGACGCGGTGCGGCCGGCCGACGTGCCGGGGGCTGGTGCGGGACGCCCTACAGCagacggggggggcgggggtgaccctgtggcgcagctcctggtgggGCAGGCCAAGAGCGCCGGGTCCAGTGACAACATCACCGTGCTGCTGGTGTTCCTACGGGACCCCACCCTGCTTCTCCAGGAGGCCACGcctccacactgcccccgccccagaCACCGCAGCATCCACCTGCAGCGACCTCCAGAAGGGGGCACCAGCGGGCCCGTCGGACCAAACTGCAGCCAAACAAATCAGGCTTTGACATCTCCACAGTTGTGCAGCAGAGTGAGATAATCTGTTCCCAGGAAATGGTTTCATCTGTGGGGTCGAGCGCACGGTCTGACTCATCTCCGGCCCACAATGCCCTGTGCCTGCTGATGGGAAGTCTTCAGCCAGTGATGTCAGTGCCTGATATCACACTTCAAACGGTTTGGCTGCTTCTAGTGATGAGAGTATAACAGAGAATAACCTGAAGGCCGCTGTATAAAACTGCAAAAGGGCATTACCTGCCTGTCCCAGACACACACTGAAAGCTCTGCTGTGATTGGGTAAGAAATCAGACTGAACAAAGATGATGAGCTGGCCTTTCTGATTGGAGCAGCACACCATGCTCAGTCAGTATTTTTCAGTGGCCTTTATAGCCGATCATAAAACCCAACAATGGACAAAAACACCATGCAGCTGGAGCACGTTTGAATGCCTGTAAAACCCTGGAAGTGTAATTATGCCTTTGGAGAGGTTCGTACAGTCAGGGAGAGTGTTAGCCGTTTGTGTTCAGCTTAGACTTGGGGTTCAGAACTGCAGAATTTCCTTCTCTAAGGTACAGTGCACTGGATCTACATACACAGTCAATGTGGGACATGATATTAATTTCTAACCCGGACAGAGGAACTTCAGCCCATATTTGCACAAATTCAAGCTGCATCCGGGATGATTTATTGCAAGCGCATATTATACAGTATTAAACTTTTATGAGTTTTTTTTGTGCTAACGAGACTGCATGCTACATTTGTACTCACAAATTGTTAATATAATGGGCACTTTTTTAATTGGTTCATTGTTTTTATGTGACAGAAAATTATAATCTTCCTTAAGGATAGTATAGTTCTGAGAAGGATAATCTTCCTTTAAGGATAGTGTAGCGCCTAGGAGGataatctttgttttttttaagcttttGCATTGTGACTATAACGGGAAACATCCCCAGATGTTATAGCAGCATGTACGTAAGTGCCTTAACCAACGTCATGAAGCTCAGCAAATATCTCAATAATAAACCGGACAGTCATttcaatttcttttctttttttgtttgtcatCCAAATCAATGATATTTAACTATTTTATTTCTGAGAGCTTGTTAATTTACTTTGTGGGAAATTCCAAATGTTTTTGAATTATGATTAGTGTGGTTATGAATGACTTCTGTGCCTCTCTGTATAGCCTTTAGGTTTTCGGTCCATGTTGTGTAAGAGAGCATAGTTTTTCCCTGCAAGCGTGTGGGGAAAATGCACCTCGTATTGTGTACTCGTATTGATTGCCTCCTGATCTCGAGTCAGGTTAGGTCTAGCTGTGTTTGATTGAGATGATAGGCCTGTTATCCAGGCAGATCATTACAGTATTACAGTTTTTATATTTCCATCTTTGCTTCTGACAGGAGCCTACCTGCTTGGTTATTATCATGTATTTCTAAGGATTTTTTAACCATAAGATGTAAATACTCTGCCTCACACGCTGTTTTTTTACATGAGTGAAAGTGTTGATTAAACTCCAGCCTCTAACACtgccattttcctgccaaaacCATAATGTGTTGTGGAAATCTGTATTAAAATACAATTGTTAATCCCTCTCGTTGTAATGTCTGTTTTTTTAGATTTGATTTGCCGTAAATGGTTATAAGTGCAGTATTACATGCATCTACATTAGCTGCTGCTATGAGTTACTGTATGATACGCTGTAGTTATATACTCAAGATAAATTAACCCAATTTGCTTTGAGTTTGAGTTTTGAAGAAGAAACAAAGCTATTGGAAAATTGTTTCTTTTGTACTACGATGTTATGAAAAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00481	PP2C	Protein phosphatase 2C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000222	Binding_site	PPM-type phosphatase, divalent cation binding	Interproscan
IPR001932	Domain	PPM-type phosphatase-like domain	Interproscan
IPR015655	Family	Protein phosphatase 2C	Interproscan
IPR036457	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13832	PROTEIN PHOSPHATASE 2C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004722	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006469	Biological Process	negative regulation of protein kinase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0043169	Molecular Function	cation binding	Interproscan
GO:0043280	Biological Process	obsolete positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-