Gene detail

Detailed information of SKAU_T00005290 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00005290	LD33695P	CM056376.1	11526531	11596399	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00005290

Transcript

SKAU_T00005290

ATGACATATCTCAGGGACAACAACTTCATCAAGGACTTTCCCCAGCTGGCCGATGGACTGATGGTCATCCCACTGCCTGTGGAAGAGCAGTGTAGAGGGGTCCTGTCCGAACCACagcccaacctgcagctcctcacagGAGATGCCCAGTTCAACGAGGCCATGGGATATCCCATGGTGCAACAGTGGAGAGTCCGCAGTAACCTGTATAAGGTGAAGCTCAGCTCTATCACACTGTCTGCAGGTTTTTCTAAGGTGCTCAAGGTGCTGAACGCAGAGAGCACACGCGAGGAGCTGCTGTCCTTCATCCAGCAGTACGGCAGCCATTACGTCTCAGAGGCCCTGTATGGCTCCGAGCTCACCTGCACTATATACTTCCCCAGCAAGAAGGTCCAACAGCAGCTCTGGCTCCAGTACCAGAAAGAGACCACCGACCTGGGCAGCCGGAGGGAGCTGAAGTCCATGCCCTTCATCACCTACCTGACCGGCCTCCTGGCGGTGCAGCGGCTCTCAGAGGACCACCTGGTCACGGGCGTGGAGATCCGCTGCGAGGAGAAGGGCCGCTGCCCCTCCGCCTGCCACCTGTGCCGACGCCCGGGCCTGGAGCAGCCCAGCCCAACGCCCGTCCTGCTGGAGGTCACCCGCATCGTGCCCCTCTACAGCCTGGTGCAGGACAACGTCACCAAGGCGgcTTTCAGAAGTGCCACCATGAGCTCATACTGGTGCGCAGGGAAAGGTGACGTCGTCGACAACTGGTGCCGCTGTGACCTGAGTGCCTTCAGCAAGGACGGCCTTCCCAGCTGCAGCCCTCTACGCCAGCCCCTgatGGAGGCGTCGTGCCTGGAGCTGGCGCTGGAGGGCGAACGGCTCTGCAAGGCCCGGGACTTCAAGGGCGGGGCCGTGTTCTTCGAGGCCGCCGTGGAGGTCGGCACGGAGGACCTCAAGACCCTCAGCGCCATCTACAGCCAGCTGGGAAACGCCTACTTCTACCTGAAGGAGTACGCCAAGGCCCTGGAGTATCACCGCCATGACCTCACCCTCGCCAGGACGATAGGGGACAAGATTGGAGAGGGAAAAGCCAGTGGGAATTTGGGAAACACGCTGAAGGTCCTGGGAAGGTTTGACGAGGCGGTGGTATGCTGCCAAAGGCACTTGGACATCTCCCGTGAGCAAGGAGACAAGGTTGGAGAGGCTCGAGCTCTGTACAATATCGGTAATGTCTTTCACGCCAAGGGCAAGCAGCAGGCCTGGGGCAGCAGCCAGGACCCCGGAGACCTCCCGCATGACGTCATTGAGACCTTGCAGAGGGCCACCGAGTTCTATGAGATGAATCTGTCCCTGGTGAAGGAGCTGGGCGACCGAGCCGCTCAAGGCCGGGCCTATGGAAACCTGGGAAACACCCACTATCTGCTGGGCAACTTTGTGGAGGCCATAAAGTTCCACAGAGAGCGGCTCTCCATCGCCAAGGAGTTTGGCGATAAGGCAGCAGAGCGCCGTGCCTACAGTAACCTAGGCAACGCTCTCATTTTCCTGGGTCAGTTCAACCCTGCCACCGAGTATTACAGGAAAACGTTGCAGCTCTCTCGGCAGCTGAAGGACCGAGTGATGGAGGCCCAGGCTTCCCAGGAGCTGACTGACAGgaTTGGAGAGGGTCGTGCTTGCTGGAGTCTGGGAAATGCCTACGTTTCTTTGGGAAACCACCGGCAGGCGCTGCACTACGCCCGAAAACACCTGGACATCTCTCAAGAGATCGGGGACCGTAACGGAGAGCTGACGGCACGGATGAACGTGGAGCAGCTGACGGAGGCTCTGGGCGCCGTTGAGGGCGAGCTGCCGCCCTGCGGATCGGAGGTCCGGGCTCAAGGTGCCAGGCCAAAGTTCAGCTCCAGAGATAGCATGGAGAGTGTGGACCTGTGGAAATACTCATCTGAAAAGGAACAGAACGGCGATTGTAATCATCTGGAAGACTTCTCCCGAGGGGGGCGGGGCAACGGCTCCAGGCTCGCCAATAAGGCGGGGCATCCCGAGGGCCAGCCGGCCGACGAGAGGCCATGGAGGACCAGCCCGGAGTCTCTGCTGGACGCTGATGACATCAGAGTGCAGGTGACCACGGCGAAGCTGGCCAGAGACCCCTCTGATGAGGACTGCTTCTTCGACCTCCTCAGCAAATTCCAGAGCAGCCGCATGGATGACCAGCGCTGCCATCTCGATGAGCCGCAGGATGTGTCTGAGGGCAGGGCCGAGGGCGGGGCCACCTCCAGCCCAGTGTCACCGCTGGGTGACCTCATGGACTCCTGCTCCCTGATCTCCTCGCCACAGACGGAGGAGCTGTTTGACCTCATCGCCAGCTCCCAAAGCCGCCGGCTGGACGACCAGCGGGCCAACGTGGGCAACCTCCCGGGCCTCAGGATCACCCAGAACAACCTGGGGCACCTACGCGGAGACGCGGACCTCCAGGAGCCCGGCGACGACTTCTTCAACATGCTCATCAAGTGCCAGTCCTCTAGGATAGACGATCAGCGCTGCTCCCCTCCCGATTTGGGTCCGAGGGGCCCCACAGTTCCAGACGAGGACTTTTTCAGTCTGATCCAGAGGGTGCAGGCCAAGCGCATGGACGAGCAGCGAGTCCACCTCCCCTCGGACCAGCAGGACGAGCCCGACTCCGACCCGCCGTCGCCCCCTTCTGGAGACTCCAGTTAGAGCTGCGCGGATCCGACCCCACACCCGGGATTGACTGACACCCCTTCCCTCACCCGCCAAATCTAATCCTTTTATTTCTAATATCCGTGTGTAAACAAGGGTGGAGGGGAACCCCTACATGTTCTGGACATTTTTTTGGGGGTACGGTCGGATCAGGTTTCGGATGCTTGGGATTCGCGGAGAATCTCCGGCTCCCTCAAACCGTCTCCTGCAGATTGACCCATTTCGGACGGGGACTCTTTGTGAAGCCCATCACAGCTATAGAATCAGGAAAGTAGCAGACATGTGATGGGGTCATAGGAAGACGATATACAGTGTTGACAGCATAGACGTAAGAAGTGGAGTATAGCAATGTGCATGAATAAAGTTGGTGTTTGTGGGGGAACAGTATTACTGTAGGGGAACAGTATTACTGTGGGGGGAACAGTATTACTGTAGGCAGTGAAGAGCGTGTATATCAGTGTTCAGTTAAGCAGTAGCTCTCctctcatctttttttttttgtatttggattGACTCATTTAAACAGGTACAGAATTGAATCGACGGGATTGCTATGCATTGTGGGAACACGGAAAAGTTAAAACCGATTCACTGCTGAAAAAAGCAGCATCTGCTCAATATTTTCTCCTTGCTCAGAGCGGCATGTTTGGGGCGTGGCATGTTTGGGGCGTGCCGTTATTTTGTCTAATTATTTTCGCTCCCTTGTAATCCATTTAATTTCGGAGGCACAGAATTCCTTGAGAGGGGGGCGCTTTGGATGAGCGCACAGTGCGGAtagtaaaataatttatttaactaGTCAAGCATATATGTAGGAAGAAATTTACTGTGAAAACAATTTAAAGCGGTACGCAGATTTCTAAGCTATGGTAGGGACGCCcgtctcccccccgcccccccttaaATTatagactgaaccctgtgtgtgATTTGTCCATTTTTGGGGTGACACAGCACCTCTGAGCATAGCCATGGCTGCACGTTAGCAGGCTTTATGCgcagctgtttttttttgcacCTTTTACTTGTGCCAGAATGTCCACACTCTCTCTTCTGCTGTAGTGTTGGGAAAGAGGCTGTGCAACACTGATACATGCAGTCACATGCAGTCGcagtacacagacagacagagacaggtgTAACTGATGCAGCAGTACAATGGCGCTGATTTCACGATGGGCAAATAAAGATTCTCTAGGCTAAGCAGATGGTTAGCTCTGCGTTCTAAGATGCGCTCAGAAAGAGATTTGGAAAAAAATAGATTTAGGAAAAATAGGTGCTGAACTTAGAACTAGAACAGGTTTTTTCCTCAGAGACGGACGTTTGTATTCTTTATTAAGACAATGCGAGCAAGATAGATATTGTGGAATTGAGATCAGCCTAGATCAAGTCATTTTACCATATTCTCCTGAGACCTGACAGAACATTTTTTgaagtatttaattttctataagcataataaaattatttattttatttgaatgtcccagcacagtagaatatatggttcttgagattaagaccagaggctCATGTCCTGTACAAGGGATACAAATGAATTGCCGGGGCTTAGGAGAAATTTTGCGAGTAAGAATCACTGGAGACAAGTGTTCTATAAATGTCTCTATAAATAGGCTGAAAGAGAAATCATTTTAAGCTGCAGTTGATTCAAGTGTTTAACTCATTTAATTGAGTCGACTTACAAACATAGTGCCAATCATACAGaaagaatgaaaaataaaagttGATTACGTAAAAGAAATTAAGATTGAGGAATTAATGTTGGGTGTTTTGCCTCCGTACTGTTGAAGATGAAACATTCCAGTTTGTTGCATCTCGCGATATTTTTCAATGTTCCCAAGGACTGTGCCGGTGGAAATGAGTGCCCTGTCCTTCAAGATGCCTCCTCATGAATATTGTGTCATTTTAGCACTGGAAACTCCAAGAATAAATTAAGTTAGAGGACGGAAGTAATGCAGGGACTGACCATCTGGATCCGTTAGAGTCATCTCTTATTGCTCGTCCAGTCGGTCCCTCATTCTGACAGAATGCCGGAGGTTGGTCAGTGTCTCCAACGGGCTCGGGTGCATCAGGGACGTCATCACAGAGAGGGACTTTGCGCCTGGTCGCGATGTTGTGTAGGACAATGCAAGCAAGTATTATGTTGCATGCTTTCAGCACTGTGTGCGCAATCACCATCTGCGTTCTCTTGACCTGTGGCCATGCGAACATGCGCCGCGAGTGCTCGCATCGGGAAAATGCACAGCTGTGGCCACGTATCCCACGTCTACGGTGGTGTCAGTCAGATCTCTGATATCGTCGGCCTTCCTCTCATGCTgacacagccaaaaaaaaagagcaaatgaAAGAATCCCCTCTTAAATAACGTACGAGAAGCTCTGCTTCCGTCAGACTGAACGAACCCGTTTTTATTGTTCACTTTCCTGAAAGCGGAAAGAAAGCATGCCCGTGATGTGTTCCCAGGGTTCTGTGTGCTTTGCCTTGGTGTGAGGGTCCACTGCAGCAGATATTCCACGGCTTAGGAAGGATAGGGACTCCTTAGCTTCCCAACGGAACGTAGTTTACTGAACTATGGGGTGAAGAATGCCATGACTTTGACCCTTGCTCTAATCATTCGCAGCTCGACGAGCCAAGATGCCCGGTTCTCCTTTTTCTCCCAGAAGGGAGCTGCCATCTTGCTCGATTGCTTGCTGTTTATGCATAGAGAAAGCAGGCAAAGACTGCCATGTGAAAGCTGATCTCAGTAGCTTATCGCTGTTCTGGGACCAGTTGGTACATTTTCAGCTGTTACTgccacatgtacagtacataacGCTTTGTATTTATATTCTGTTTGTCGGGACAGGAGGACCAGTCCTCTTCATTTTAATAAAACTTTGACTCAAAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01823	MACPF	MAC/Perforin domain	Domain	Interproscan
PF02188	GoLoco	GoLoco motif	Motif	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003109	Conserved_site	GoLoco motif	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR020864	Domain	Membrane attack complex component/perforin (MACPF) domain	Interproscan
IPR052386	Family	G-protein-signaling modulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954	LD33695P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000132	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0001965	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0005092	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005938	Cellular Component	cell cortex	Interproscan
GO:0030695	Molecular Function	GTPase regulator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-