Gene detail

Detailed information of SKAU_T00004970 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00004970	RNA HELICASE	CM056376.1	10325657	10362210	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00004970

ATGGCAGAAGACATGTTGATGCTGAACATCACAGACTCGGCAGCTCCAACCTTCAGTATGGGGAACAATAAATTCAAGAGAACATACAAGCCGACGGATAAATGGaaaagaaaaaaagctgaAAAAAGGAAAGCATCGAACAGGCCCCAAGAGGCCCCCCCTTCCAAGCAGAAACCGCACCCCGTGCCACAGCAGAAGCCTTGTAAGCCCCTCTGCCGGCCCGCACAGAAGGAGAAACCCTCCAATCACTTCCCAGAAAGTCCTCCCATTAAACCAACAGAAGACACTGCAGGGAAGGAGGGGTTGCACGCGCTACCAGGGAAACGTGGCCGAAAGACTGCGGGTCCTCCTAGGCCCCATCAGAGGAGTCAGCCGCCGGAGGACGGGAGATGCGAGGATAGGCCGTTCATCAAGACGTCATCGCTCTTCAGAAATAACCCCGACATCCCGGACATTCACAGGTCTGATGTGACCCAGGTGAAGGAGAAGGTGTTTACAAGCGACTCCTTTGCAGAACTGGAGCTCCACCCCCACCTGCTGTCCACTCTCAATAATGTGCTGAAAGTGACCAGCATGACCAGtgTACAGAAGGAGACCATTCCTGTGCTTCTGAATGGGAGGGATGCGGTGGTCCGTTCACAGACTGGATCAGGTAAGACCTTGGCCTATGGGATACCACTGGTGCAGTCTCTACAGGCCGTGCAACCTAAAATCAAGagAGGAGATGGTCCACTGGCTGTCATTGTGGTCCCCACTAGAGAGCTGGCCCAACAGAGCTTCCAGATCATCCAGAAGCTTCTGAAGCCCTTCACCTGGATCGTCCCAGGCGTCCTGATGGGAGGGGAGAAGCGGAAGTCGGAGAAGGCCAGGCTGAGGAAGGGGATTAACATCCTGATCTCGACGCCGGGCAGACTGGTCGACCACATCAACAACACGCTGAGCATCGCCTTCAGCGCCGTGCGCTGGCTCATCCTGGACGAGGCCGACAGGACTCTGGACCTGGGCTTTGAGAAGGACCTGACCGTGATCCTGAACACGCTGAACGCCACCGGCCCGGCGAGGCAGAACGTGCTGCTCTCCGCCACCCTCGCCGAAGGTGTTACTAGGTTAGCCGACGTCAGCCTGAAGGAGCCAGTCAGCATCCAGGTGTCTGAGCATTCTACAGCAGTCGGGGTGGCCCCTGACTCCGCAGAGGCGACCCCTGACCCCACGGGCCCTGGCCTGACGGACAGCTTCGCGGTGCCAGAGAAGCTGCAGCAGCATGTGGTGGTGGTGCCCAGCAAACTGCGTCTGGTCTGCCTGGCTGCCTTCATCCTGGGCAAGTGCAAGTTTGAGTCGGGACACAAGCTGATCGTCTTCCTGTCCAGCTGCGAATCGGTGGAGTTTCTGCTGAGCCTCTTCAACTCGGTGCTGTGTGGTAAAGCGGACCCCTCCGCCGCGCCCGAACAGCGCCCCCCACTGGCCTTCCTGAGACTGCATGGCAACATGGCGCAGGAGGAAAGAACGGAGGTGTTTCAGGAGTTTTCTCAGACCAAGACTGGCATCTTGCTCTGCACGGACGTAGCAGCTCGTGGGCTGGACCTTCCCCAAGTGACCTGGATTATACAGTACACACCCCCAGTCTCAGCGGCGGAATACGTGCACCGCGTGGGCCGCACAGCCCGCATTGGAACCCGAGGGAAcagcctcctcttcctcactcctTCCGAGACCGCCTACCTGAACGTGCTGGCCAATCACAATATCGGCATGTCAGACATGAAGATGGAGGACATTTTGGCGAACCTCATGCTGGACGAACGTTTCAAAGGCAGAGGGAAGTGGGACAGCAAGAGGAGTTCAGTGGCTCTGCAGGAGGAGATTCGAGTAAGAGCCACAGTCCTGCAGACAGACTTCGAGAACGTTGTTCACGCGAACAAGGATTCTGTGCAGACGGCCAAGAAAGCTCTGCAGTCGTTCCTGCGGGCGTACGCCACCTACCCAGCCAGCATGAAGCACGTCTTCCACATCCGCCACCTCCACCTGGGCCACGCCGCCAAGAGCTTCGGCCTCAGGGACGCCCCCCAGGGCCTGACCGgcgcgggggcggggccaggggccCGGCCAGGGGCCCGGGGCGGCAAGGAGAAGGGCAAGGGCAAAGAGACGAGACCCCCCAGGAAGCTGAGCAGCAAGGAGCGGGTGGCGAACCTCATGCGCTCCGAATATGCCAGCGGCGCGGAGGCCGACTCCGCCcacaagaagaagaggaggaagaagaagcagCGGCAGGCGGCTGAAGGCGACCAGAACTAG

Transcript

SKAU_T00004970

AGCGCCTCCGACCATGATCCTACTACACGGCTCACTAAAACGAACCGTCAATCACAGTGATGATACACAAACGTTAGCGGAGAAAATATGAAAACACAACAGAAAGTGAGATGACAGGTCGAATGAGGGATTGATCCAAGGCGCAACGCAGCAGCTCTATCGCCGAAACTTAGCCTTACCTTCAACACACAGTTGTTGTCCGGCACGGGGATAGATGTTCGTTGGATGATCAGGTCTTGTCCGAAACCATGAACATCGCACACGATCTCCATCAGAGAAATGTTATTCGTACTGGAGGCCGAGATTCGGTGATCTTCGGACCACGAGAGCGGTTCCAGGCCACTGACCGGACTCAGGAGCTTAATAGTGGGTTCCCTTTTAACAATCGGCCCCACTCCCATCCAGGAATCCGTATCTGTTTCGGATTCTGTCCCAGGTTCGGCCTCCCCCCCATCCGAGCTGCGATCTGGGCTCGAAGCCGCCATTTTCCATGGGAAAACAAGAGAAGCGTCTCCAGGAAGTTACGCATAGCTGGAGGAGGGGCTAACGTTACTTGGCGGAAACGAGGAATGCGAGGACCCCAGCAAACACTGCAATATTAGCACAGCCTCTCTCTGCTACATATAGAACTGTGTTTTAAAACTACCTGACAGGCTTAGATAATTTATCCAATTATCACAAGTGATCGTGTGACTTTTGGTCCGAAATATCAAGGAAACGTGTCACTGTGGATGCGGAATTTGGTGGATTGTAACGATCAGGCACCTGCGAGGTCCCCACATTTTTGAGCCGAGGTACACACGTGGGTTTGACTGAGAAGGGAAAGGTGATAACATTTATGTTGAGATGGCAGAAGACATGTTGATGCTGAACATCACAGACTCGGCAGCTCCAACCTTCAGTATGGGGAACAATAAATTCAAGAGAACATACAAGCCGACGGATAAATGGaaaagaaaaaaagctgaAAAAAGGAAAGCATCGAACAGGCCCCAAGAGGCCCCCCCTTCCAAGCAGAAACCGCACCCCGTGCCACAGCAGAAGCCTTGTAAGCCCCTCTGCCGGCCCGCACAGAAGGAGAAACCCTCCAATCACTTCCCAGAAAGTCCTCCCATTAAACCAACAGAAGACACTGCAGGGAAGGAGGGGTTGCACGCGCTACCAGGGAAACGTGGCCGAAAGACTGCGGGTCCTCCTAGGCCCCATCAGAGGAGTCAGCCGCCGGAGGACGGGAGATGCGAGGATAGGCCGTTCATCAAGACGTCATCGCTCTTCAGAAATAACCCCGACATCCCGGACATTCACAGGTCTGATGTGACCCAGGTGAAGGAGAAGGTGTTTACAAGCGACTCCTTTGCAGAACTGGAGCTCCACCCCCACCTGCTGTCCACTCTCAATAATGTGCTGAAAGTGACCAGCATGACCAGtgTACAGAAGGAGACCATTCCTGTGCTTCTGAATGGGAGGGATGCGGTGGTCCGTTCACAGACTGGATCAGGTAAGACCTTGGCCTATGGGATACCACTGGTGCAGTCTCTACAGGCCGTGCAACCTAAAATCAAGagAGGAGATGGTCCACTGGCTGTCATTGTGGTCCCCACTAGAGAGCTGGCCCAACAGAGCTTCCAGATCATCCAGAAGCTTCTGAAGCCCTTCACCTGGATCGTCCCAGGCGTCCTGATGGGAGGGGAGAAGCGGAAGTCGGAGAAGGCCAGGCTGAGGAAGGGGATTAACATCCTGATCTCGACGCCGGGCAGACTGGTCGACCACATCAACAACACGCTGAGCATCGCCTTCAGCGCCGTGCGCTGGCTCATCCTGGACGAGGCCGACAGGACTCTGGACCTGGGCTTTGAGAAGGACCTGACCGTGATCCTGAACACGCTGAACGCCACCGGCCCGGCGAGGCAGAACGTGCTGCTCTCCGCCACCCTCGCCGAAGGTGTTACTAGGTTAGCCGACGTCAGCCTGAAGGAGCCAGTCAGCATCCAGGTGTCTGAGCATTCTACAGCAGTCGGGGTGGCCCCTGACTCCGCAGAGGCGACCCCTGACCCCACGGGCCCTGGCCTGACGGACAGCTTCGCGGTGCCAGAGAAGCTGCAGCAGCATGTGGTGGTGGTGCCCAGCAAACTGCGTCTGGTCTGCCTGGCTGCCTTCATCCTGGGCAAGTGCAAGTTTGAGTCGGGACACAAGCTGATCGTCTTCCTGTCCAGCTGCGAATCGGTGGAGTTTCTGCTGAGCCTCTTCAACTCGGTGCTGTGTGGTAAAGCGGACCCCTCCGCCGCGCCCGAACAGCGCCCCCCACTGGCCTTCCTGAGACTGCATGGCAACATGGCGCAGGAGGAAAGAACGGAGGTGTTTCAGGAGTTTTCTCAGACCAAGACTGGCATCTTGCTCTGCACGGACGTAGCAGCTCGTGGGCTGGACCTTCCCCAAGTGACCTGGATTATACAGTACACACCCCCAGTCTCAGCGGCGGAATACGTGCACCGCGTGGGCCGCACAGCCCGCATTGGAACCCGAGGGAAcagcctcctcttcctcactcctTCCGAGACCGCCTACCTGAACGTGCTGGCCAATCACAATATCGGCATGTCAGACATGAAGATGGAGGACATTTTGGCGAACCTCATGCTGGACGAACGTTTCAAAGGCAGAGGGAAGTGGGACAGCAAGAGGAGTTCAGTGGCTCTGCAGGAGGAGATTCGAGTAAGAGCCACAGTCCTGCAGACAGACTTCGAGAACGTTGTTCACGCGAACAAGGATTCTGTGCAGACGGCCAAGAAAGCTCTGCAGTCGTTCCTGCGGGCGTACGCCACCTACCCAGCCAGCATGAAGCACGTCTTCCACATCCGCCACCTCCACCTGGGCCACGCCGCCAAGAGCTTCGGCCTCAGGGACGCCCCCCAGGGCCTGACCGgcgcgggggcggggccaggggccCGGCCAGGGGCCCGGGGCGGCAAGGAGAAGGGCAAGGGCAAAGAGACGAGACCCCCCAGGAAGCTGAGCAGCAAGGAGCGGGTGGCGAACCTCATGCGCTCCGAATATGCCAGCGGCGCGGAGGCCGACTCCGCCcacaagaagaagaggaggaagaagaagcagCGGCAGGCGGCTGAAGGCGACCAGAACTAGCGGCTGGCGAAACCCAGGGAGTGAGGTTCACAAACCCCTCCCCCCCAGTGTGCTCACTGCACCTCAGCCTTGCTCACCAGCCTTGTGCCTGACCTCACAGCACACCTTGTGACAACCGAGCTCTGAACCCAGATAATGTGTATAAGGCCATGGTGTAGGAAGCAGCGAGTCATTCCTCTGTCCAATCAGCACGCAATAGGCCTGCCTCATTATGTCCTCATGATATATTGGTCATGTTCGTAACAAGAGACTTAACCTTCCTGGAATTAGGGGCAGTCGTACATATTAATCTCAGTTAAGTGGACTGTTGTTGGTAGATGTAATGACTGGCTAAACAATGGCAGGCCTGACAAACGGATGTTTGAAGCCAACTTTTATCATGGTCTCCCAAAAGGGGTGTGGTATTTCACCCCCATCCCGCCCCTGCCTAGAATCTATGTCCAAACTAGACACTCACAGGGTGGGGAATTCAAGACTCACTCATATTTCTCAAATACAATGGATGGAAATTAAGTGCCTGAAACATCTAACTTTGGCAGTTTGataatgtttgtattttaaatttaattataaaatgtgaaaaaaaagtatAAGTCCATCTTGTGAGTCATTATCCATTATCttttaaaaagtgtgtgtgtgtgatttttgaATGACAAACACCCTCTTCCCTCTGTATTGCATTTCATTTGTTGTTAAAAGATTTTCTACATAAGGCCTAAAGTTGCTTCAGCTGACGTTTGATTTGCactattcattttattttggaCTTCTTTCCAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF13959	DUF4217	Domain of unknown function (DUF4217)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR025313	Domain	Domain of unknown function DUF4217	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24031	RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-