Gene detail

Detailed information of SKAU_T00004820 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00004820	ARRESTIN DOMAIN CONTAINING PROTEIN	CM056376.1	10046910	10078233	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00004820

CCAAAACGGGAGAGTTGGATCCATACCGTCCTTCTTTACGCAGTAAGACTCTGCAAACACCTTGGAACACTGGCTAACAAATAAAGTATATGGGGTGGGGGCTTGCCAAACAGCCAAACATATTGTAACAATTTTCTGCCATAGACTGAAGAAGACACTGGTTACAGTCGCCCCCCAGTGGAGATAATCTGAGtagcagaaaaaaaaactaagtcCAATTGTCCCGCAGTGACGTCACTCTCACTGAGGCTGGATGGCGATAGAGCCGCAGGTGGGACAACGCAACAGTAGCGCAGCAGAAAGGACGCCTTCCAGCAGCTGGTGTCACTGCACGATTTGTGTGTCGGAGTGAGAGACGACATGGGAAAGCTCTTGGAATTCGTTATCACGTTGACCAACAACAAAGTGGTCTATAACCCCGGCGAGTCCATTTCTGGAAACGTGAAAATAAAGGTAGCCAATCCGCTGCAATATAAAGCCATCAAAGTGAACTGCCATGGCTCCTGTGGGGTGACAAACAAGGTGAATGATGAAATTTGGGCAGAGGAGGAGCAGTACTTCAACAGCACGCTGTCTCTGGCAGATAAAGGTACACTTTCGGCCGGAGACCACAGCTTTCCCTTCCAGTTTCTCATTTCAGATACGGTTCCCACCTCTTTTGAAGGGCTGTACGGGAAGATTATGTACATAATGAAAGCATCCATCGACACACCCCGCTTCTCCAAGGACTACAAGATCCAGAGGTCCTTCCATTTGCTCAGACCCCTCAACCTCAATGAAGTGCCAGAGATCGAGAAACCAAACTCGACCACAACCACAAAGGACTTCACGTACCTGCTGGTGAAGACGGGCACGCTCACGCTGAAGGCCAAGACCGACCAGCGGGGCTACATCCCCGGCCAGGTCATCGAGCTGACCACTGAGATCAAAAACGATTCCACCAAGCGCACGGGCCGCATTTTGGCCAGCCTCAGACAGAAAGTGACGTACAGGACGAAGCGCGTCGTCTGCAGCTGCCGGACGATCGCGGAGGTGGAGGGAGCGGGGGTAAAAGGAGGCAAGCGCGCCGAGTGGAAGGAGCAGATAATTGTGCCTCAGCTGCCCCAGTCTGGCCTGGACGGCTGCAGCCTCATCTCCATGGACTACTTCCTGCAGGTGTCTCTGAAATCCCCGGAGGTGTTTGTGATCCTGCCCATCCACATCGGGAACGTCGCATTCGACGCCACCCTCCCCCAGACCCCGTCCAGGCATCCCCGGCCCAGCCCGGCACCCCGCCCGCCCCcccgtccctccccctccccccgggCGAGCATCGGCTCGGCGACTCCCAGCGCCCCCCCAGCGGAGGAGAGCCCGGGGCAGGCGAGGGGCGCAGGGGGCTTGTCCGGCGAGGCCATTCCCGCCAAGAGCTACTCGCTGCAGTACCCCTCAGCGCCCGAACCTGCGCCCCGGAGCCGCCCCCGTTCCTCGGGCCCCCTGGGACCCCAGTTCTCCGTCTCCGCGGGGGCGACCGTCCCTTTCTTCTTAGAGGGGAGAGGCTCCCCCGTCCCGGCCTCCAGCCCGCTCGCCTCGCCCCCCGAGTACAGCTCGCAGGCGTTCCCGCACGAACCTCCTCCCACCTACGAACAGAGCTGCACCAGTAACAGCTAAAGTTCCAGTCAGAATGCAAGATGCCTAGTTCTACCGCAGCACCTGCCTGCAGGACCCCTGCGAGACGACTGTCCCTGCTGGATATATGGAGAACTGCAGGCTGGTTCCAGCTTGGACAGAGTGACAGTTTTTATCATttgtaaatttgtatttccagACTTGGAAAAGggattttagtttatttattctttgtgtgtgttttttaattttttttaaaagttatacgTTTCCTCTCTTGTCTGATGTTTTGGCTGTGCAGGGTTTGAGCAGTAAAAAGGATTTACGAGAGTGACGAGACTTTTACCACAAGAACCTGGAAGAGCCTGTGGACAGGGCAAAGATCACAAAAACAGGACCAGGTTTTATTAATGTCAGTCAGTTTGCAACTGTGTGTCTATTTTATACTTATATTAGCATCTGTGATGCATCAAATTGAAAACAACTTAATGTTTTTGTCAAATAACGTGGCCTTTACGTCAAATCCCCATAAGATGGGAGTTCTGGCTACTCTTTTAATGGCCGCCTCGAATGCGCAAGTCATTGCACACCACTAATAACTGAGTCTGTAGGCGGAGTTTACCAACAACACGTGAACATCTTAAAGCAAGACGCGTGCACTTTAACAGCTGTCATGCAAAAGGACTGTTGAGCTCCAAAGCTGCCGATTGTTCCTGCGCCCACCAGGGGGCAGTCTAATAGACCTGTTGGACAGAAGTATCCGGGGGACAGGCTGGACTCACTTGGGGTAAAAGAAGATGAGTTGTATTCTCAACCATGGACCTTGTCCCAGATGGTATACCCCCACACACTCCAGCCCAGCCTCATGTGATTGGTCAGACCactcccccccccacctcttTTCCAGGCTAAATGGCAGTACTGATGCACGATCTAAAATGTAATGGAAAACCAGCTGCTGTGCATCAGATTTTCTTGTTTAAAAGGCGGAGGATTTCTGTTTCCCATGAATGCCTTAGTCTCATACCACGTCTGCGTGTTTATGTCTTCAGGGCTTCAATGTCTGTCAGTCATGTTGAACAGATGTACCACAGAAAATGTTTTGTTCTCATGGGGCAAGTACAGCACTTTCGTACATCACATAAACCACTTATATTCTGCTCAGTTTGATGTACTAGCTGTGCAGCTATACTGCAAATTCTTAAGTTTTAAAAAGATCTCGGTTAAGATTTTGTTTACAGTTGCTTCGGCGCAGTCAAATGACCAGCAGTTAACCTCAAGCATTCAGGAGAGCAATGATAGATTCCAGTGCCAGCGTAGCTACCTTCATTTAATACTGTACCACTATTGTATTGTCTTACTTGTATTGTCAGGCTTGTTCCTGTCATAACCTCTATCGGATCAAACATTTGGACTTTTACTCTCAACTGACAAGAATGTGACAATTTGAAAAAGTGACCGCAAACCATTCTATTTCCTTCGCAGCAGCACCCCTGGTGGCTGAAATAATATGTCCGTTTTACAGATGCACAGGCAAACACATTCACGCACGTAGTTGAACTGTAATTCTCACACCTTCGCATCATTTGTTCATTCAAATTTTATCCCAGTAGTAGCAGAGTACAACAAGCCTCAGGATAAACTACAGGATAAGAAAGGGTACGCATTTAGCTTTGCTACCACCATCTGGACAGTGCAGAGGCAGTTCCTGATTGGCTGTCTGGCTGAGGAATTAAGATGACGTAGCAGGCCTATCTGTAAATTCATTCACATGCACAAGTTTATCCCTGTTGATTAATACATGCACAGAGGCAGCGGTGTTTGTATGCCCCCAGTTTCAACCAACATCAAAAGCCACATCAGTCAATTTTCTTATTCCTTGTGCACTTTATATTTGCACTGGTGACCTCTAATGGCACTGTGGTGCAGTGCAGGGGCCACATACATTTTTGAAATGTTTGAAACTCCCATTCCATGTTTCCTCAGGAATCACCATCCACAGAATGCTAGACATTACCAAAATGTTTGAGTATGCTTGTGTGTAATGATTAAGAACTGCTTTCGAAACCTATGCAAATGCAAAATGAATCTGATGTCCAGAGGAGATCCTGTCCTGTAAAGTTTTAAAAGTGGCCTTTGTCAGTCTCCCCCACAACAATATAATTTCTACATTTTCCCCAATTGTAAAGATTTTTCCTCTGGtggtttgtgtttttgtatttttctatttGTAATGGTCGCCCTGTGGATATTAAGTTctgaatattttatttttcctttggaTTTTACCATGTTTGATCTGCATCTGTTTTTGATCAGTGCTGTCTGATTATCAACTTTGATGAGTCAGTGTTACAGTTAAGAAAAGTTTTTAAACCTAAAGTGACATCTAAAGTGTACAAGGTACTAATAAATTAATCTCAAAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00339	Arrestin_N	Arrestin (or S-antigen), N-terminal domain	Domain	Interproscan
PF02752	Arrestin_C	Arrestin (or S-antigen), C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011021	Domain	Arrestin-like, N-terminal	Interproscan
IPR011022	Domain	Arrestin C-terminal-like domain	Interproscan
IPR014752	Homologous_superfamily	Arrestin-like, C-terminal	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR050357	Family	Arrestin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11188	ARRESTIN DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:1990756	Molecular Function	ubiquitin-like ligase-substrate adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-