Gene detail

Detailed information of SKAU_T00004810 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00004810	G9A, ISOFORM B	CM056376.1	9994174	10045355	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00004810

ATGAAGGAACCTTCCAGAATGAGAGAACAAGGTGGATGTGAGGTGGGCGTGGCCAGGCAAGGAGAATCGGGGGACCCCCCCCACGATTGGGCCGCCGGCAGCAATGGACTTAACCTCAGTAAACACGACCGGGGATCGCCCCCGTGCAGGACTAGTGGCTCGCCCACAGACCCCTCACTGGCAGGACACGCCTCCAAAGCCCTCCCCTCTCCCGCGTCGGCACGGGTCCCACACCACGGCCCTGGTGGAAGAGCAGGCTCGGGGGCTGCCGGGGGGGATAATAGTCCAACCTGGGACCCCCAGCCACCCACCACTGTACACCGCGCACGGAAAACTATGGCCAAGTCCACCTCCATTCAGACGGTACTGCAGCTTTTAAACAGGGAACCAAAAGAATCGACCagcgagagagaggagagccGGAGTCTGCTGGAGGCAGAGCGGCCTATGCAGGCGTCCCGCTCTCAAATCCAACCGTCCCAGAGCCCCAACGGCCCACCTGTCCCCACCGCCATCCCCCCCAGGCCACAGGCAGCGACTGCCGTGACccggaagaagaggaggaagatgggGACGTACAGCCTCGTACCCCGCAAGCGACCCAAAACGCTGAAACAGCGCTCCTTGCTGGACATGTTTAAGGACATCGGGCAGACCACCGCCATTGTGCAAGAGGGCCCTCCGCTGAATGGCGATAGAGCGGATAACGAGTATGAGGAGGAGTCTGACGTTTCAGAGGAGGAGGGACTGCAGGCAGGCGAGCGTCCAGGGACGGAGGTGGAGGCGGGAAGCACGACGTCCCGAGAGGAGAGCAGAGCGGCTGAAAGCCCCGCTGAGGGGGAGGGCCAGGAGTGGGAGAAGTCTGGCGATGACGGAGAAGTGGAGGAAGACGACTCTGATCTGAGTTCAGAGTCTGGGCTGAAGAAGCGGTCGAAAAAGAAAGGACAGAGCGACAACCCGCGACCGTCCAGAAAATGCAAACAGAAGATGAATGCCAAAGCAGAGGAGCTCTCGgCTCTGTCTCTTTGCACAGCTGCAGAGGCCCACTCTGAAGAAGACATTAATAATGGATCCACAGAGCCAGAGGCCCAGGCTGAAGCAGGCTCTAATTGTGGATCTACAGAACCAGAGGCCCAGACTGAAGCAGGCATTAATAATGGATTCACAGAGCCAGATGCCCAGGCTGAAGCAGACGTTCATAACGGATACACAGAGTTGCCGCTGGACTCCCTGGATCTTAAAGCTCAGGAGGAGCTGTTCTCTGCCCAGCGAGAAGGTGACGGTGCAGGTGCCGAGAGTTCCGAGACGGACACGGCGCAGGAACTGCCCCTCTGCAGCTGTCGTATGGAGACGCCAAGGAGGCGGGACATCCACTCGCTGGCGCATCGGCGCTGCATGGCCACCGAGAGCATGGACGGGCAGCTGAGCCGGTGTCAGAGTAGTGCGATGAAGTACGAAATGATGCGGCCGTCCAACGCGGTGCCGCTGCTGGTCCTGTGCGAAGCTCACCGGGCCGGCATGGTTCAGCACCATTTCTGCCCTGGCTGCGGCTTCTTCTGCAGGGCGGGGACCTTCATGGAGTGTCAGCCGGGCAGGAACATCTCTCACCGTTTCCACGGCGACTGCGCCTCAGTGATGCGGGGCCAGAGCTACTGCCCCCACTGTGGCGAGGACGCCAGCAAGGCCAAGGAGGTCACCGTCGCCAAGGCCGACACCACCTCCGCCGTGGCCCTCCCCCCTGGGCCGGAAAAGTCCGTCCCCTTCGAGGGCAGGGCCGACACCACCAGTGGAGGCTCCGCTCTCCTCCTGCTGTCCGTCCCGGAAAGGACAGGGGGGCCCTCATCATCGCCCTCAGAAACCCCAAACGTGTCTCCTTTCCCATGCGGGTCCCAGATGGGGGCCTTGACATTGGTGGGGGGGCTGGGAGCAGCTAAAGACACCCTGGAGAACATCCTCCAGGCCTTGGATGCAGAGAAGCCAAAGAAGCTGAGGTTTCATCCAAAGCAACTGTACCTCTCTGCCAAACAGGGGGAGATCCAGAAGGTCCTGCTAATGCTGGTGGACGGGATAGACCCAAACTTCAAGATGGAGAACCAGGGCAAGCGCATGCCCCTGCATGCTGCAGCCCAGGCCGGCCACCTGGAGATCTGCCACATGCTTCTGCAGGCTGGTGCCAACCTAGACATGTGTGACGGTGACCAGAGGACCCCTCTGATGCATGCCTGTGAAAACAACCACCTGGAGACGGTGAAGTACCTGCTGAAGGCAGGGGCCATCACCAGCCACAAGGACCTCGATGGCTCCACCTGTCTGCACATAGCCGCTAAAATGGGGCACTACAGCATTGTAAATCATCTCCTGTCTACCGGTCTAATAGACGTCAACTGCCAGGACGACGGAGGCTGGACTCCTGTGATCTGGGCAACAGAGTACAAGCATGTCAACCAGGTCAAGCTGCTGCTGTCCAGAGGGGCCGACATCAACGTCAGAGACAAAGAAGAGAACACCTGCCTCCACTGGGCAGCGTTTTCGGGCTCTGTGGACATCGGCCAAATCCTGCTGGATGGCCGGTGTGACCTCAACGCGGTCAACGTCCACGGCGATTCGCCATTGCACGTTGCTGCTCGCGAGAACCGACTGGAGTGTGTGGTGCTCTTCCTCTCACGTGGCGCAGACGTGAACCAGAAGAACCAAGAGGGAGAGACACCCCTGGAGTGCTCCATCCACGGCTCCAAGGTGTGGGCCGACCTGCTGACCAATAAGAAgctgagggaggcggggagtaTCAGTGGAAACCACAGGGAGAGGGTCCTTAATAGGGACGTCTCCCAGGGGTACGAGAGGATCCCGGTCCAATGTGTGAACGGGGTGGACAGCGAGCCCTGTCCCGAGGACTACAAATACATCCCAGAGAGCTGCGTCACTTCCCCCATGAACATAGACAGGAACATCACACACTTACAGTACTGTGCGTGTAAAGATGACTGCTCATCCAACAGCTGCATGTGTGGCCAGCTAAGTCTCCACTGTTGGTATGACAAGGACGGTCGTCTGCTACGCGAGTTCAGCTGGGAGGAACCCCCCCTCATCTTTGAGTGCAACCACGCCTGCTCCTGCTGGAGGTCCTGCAAGAACCGAGTAGTACAGAATGGACTGAGGACCTGCCTGCAGCTGTTTCGGACCAGGAGGATGGGCTGGGGGGTGCGAGCTCTACAGGACATCCCACAGGGGACCTTCGTGTGCGAGTACGTGGGTGAGATCATCTCTGACGCAGAGGCTGATATCAGGGAAAATGACTCCTACCTGTTCAGCTTGGACAGTAAGGTGGGAGAGATGCACTGCATCGACGCCCGTTTCTACGGAAACATAAGCAGGTTCATTAACCACGCGTGTGAGCCCAACCTGATCCCCATCCGGGTATTCACCGTCCACCAGGACCTGCGCTTCCCCCATGTCGCCTTCTTCGCCCGCAGGCACATCAGTGCCGGGGATGAGCTCGGGTTTGACTATGGCGATCACTTCTGGGAGATCAAAAGCAAGTATTTCAGCTGTCAGTGCGGCTCGCTCAAGTGTCGGCACACCGAAGCTACCAATGCCCACAGACTGGCGGACAGCACCCCCGAGGGGAAACGACCAGGCGCCCTGCCTGACACCAGCTCCACCACCACCCCCTCAAGCCCCTGCTGA

Transcript

SKAU_T00004810

GGCGGGGATTCGGGCGGGGCACCCTGGTGACTGACTGGTCTGTGGCTCCACAGAGAACAGAGCTGAGTTCCAGGGATCTTGCTGCGTAATAGATACGCTGTAATAGATACGCTGAAAAATCCTAGAACTTGGAGGCTCATTGTGCACGCGACTTTGCGAGTTGGTCTGGCCAGGGGCATTCTGGGAAAGGGGGGACCCTTTTAAACAAGGGAGATGAAGGAACCTTCCAGAATGAGAGAACAAGGTGGATGTGAGGTGGGCGTGGCCAGGCAAGGAGAATCGGGGGACCCCCCCCACGATTGGGCCGCCGGCAGCAATGGACTTAACCTCAGTAAACACGACCGGGGATCGCCCCCGTGCAGGACTAGTGGCTCGCCCACAGACCCCTCACTGGCAGGACACGCCTCCAAAGCCCTCCCCTCTCCCGCGTCGGCACGGGTCCCACACCACGGCCCTGGTGGAAGAGCAGGCTCGGGGGCTGCCGGGGGGGATAATAGTCCAACCTGGGACCCCCAGCCACCCACCACTGTACACCGCGCACGGAAAACTATGGCCAAGTCCACCTCCATTCAGACGGTACTGCAGCTTTTAAACAGGGAACCAAAAGAATCGACCagcgagagagaggagagccGGAGTCTGCTGGAGGCAGAGCGGCCTATGCAGGCGTCCCGCTCTCAAATCCAACCGTCCCAGAGCCCCAACGGCCCACCTGTCCCCACCGCCATCCCCCCCAGGCCACAGGCAGCGACTGCCGTGACccggaagaagaggaggaagatgggGACGTACAGCCTCGTACCCCGCAAGCGACCCAAAACGCTGAAACAGCGCTCCTTGCTGGACATGTTTAAGGACATCGGGCAGACCACCGCCATTGTGCAAGAGGGCCCTCCGCTGAATGGCGATAGAGCGGATAACGAGTATGAGGAGGAGTCTGACGTTTCAGAGGAGGAGGGACTGCAGGCAGGCGAGCGTCCAGGGACGGAGGTGGAGGCGGGAAGCACGACGTCCCGAGAGGAGAGCAGAGCGGCTGAAAGCCCCGCTGAGGGGGAGGGCCAGGAGTGGGAGAAGTCTGGCGATGACGGAGAAGTGGAGGAAGACGACTCTGATCTGAGTTCAGAGTCTGGGCTGAAGAAGCGGTCGAAAAAGAAAGGACAGAGCGACAACCCGCGACCGTCCAGAAAATGCAAACAGAAGATGAATGCCAAAGCAGAGGAGCTCTCGgCTCTGTCTCTTTGCACAGCTGCAGAGGCCCACTCTGAAGAAGACATTAATAATGGATCCACAGAGCCAGAGGCCCAGGCTGAAGCAGGCTCTAATTGTGGATCTACAGAACCAGAGGCCCAGACTGAAGCAGGCATTAATAATGGATTCACAGAGCCAGATGCCCAGGCTGAAGCAGACGTTCATAACGGATACACAGAGTTGCCGCTGGACTCCCTGGATCTTAAAGCTCAGGAGGAGCTGTTCTCTGCCCAGCGAGAAGGTGACGGTGCAGGTGCCGAGAGTTCCGAGACGGACACGGCGCAGGAACTGCCCCTCTGCAGCTGTCGTATGGAGACGCCAAGGAGGCGGGACATCCACTCGCTGGCGCATCGGCGCTGCATGGCCACCGAGAGCATGGACGGGCAGCTGAGCCGGTGTCAGAGTAGTGCGATGAAGTACGAAATGATGCGGCCGTCCAACGCGGTGCCGCTGCTGGTCCTGTGCGAAGCTCACCGGGCCGGCATGGTTCAGCACCATTTCTGCCCTGGCTGCGGCTTCTTCTGCAGGGCGGGGACCTTCATGGAGTGTCAGCCGGGCAGGAACATCTCTCACCGTTTCCACGGCGACTGCGCCTCAGTGATGCGGGGCCAGAGCTACTGCCCCCACTGTGGCGAGGACGCCAGCAAGGCCAAGGAGGTCACCGTCGCCAAGGCCGACACCACCTCCGCCGTGGCCCTCCCCCCTGGGCCGGAAAAGTCCGTCCCCTTCGAGGGCAGGGCCGACACCACCAGTGGAGGCTCCGCTCTCCTCCTGCTGTCCGTCCCGGAAAGGACAGGGGGGCCCTCATCATCGCCCTCAGAAACCCCAAACGTGTCTCCTTTCCCATGCGGGTCCCAGATGGGGGCCTTGACATTGGTGGGGGGGCTGGGAGCAGCTAAAGACACCCTGGAGAACATCCTCCAGGCCTTGGATGCAGAGAAGCCAAAGAAGCTGAGGTTTCATCCAAAGCAACTGTACCTCTCTGCCAAACAGGGGGAGATCCAGAAGGTCCTGCTAATGCTGGTGGACGGGATAGACCCAAACTTCAAGATGGAGAACCAGGGCAAGCGCATGCCCCTGCATGCTGCAGCCCAGGCCGGCCACCTGGAGATCTGCCACATGCTTCTGCAGGCTGGTGCCAACCTAGACATGTGTGACGGTGACCAGAGGACCCCTCTGATGCATGCCTGTGAAAACAACCACCTGGAGACGGTGAAGTACCTGCTGAAGGCAGGGGCCATCACCAGCCACAAGGACCTCGATGGCTCCACCTGTCTGCACATAGCCGCTAAAATGGGGCACTACAGCATTGTAAATCATCTCCTGTCTACCGGTCTAATAGACGTCAACTGCCAGGACGACGGAGGCTGGACTCCTGTGATCTGGGCAACAGAGTACAAGCATGTCAACCAGGTCAAGCTGCTGCTGTCCAGAGGGGCCGACATCAACGTCAGAGACAAAGAAGAGAACACCTGCCTCCACTGGGCAGCGTTTTCGGGCTCTGTGGACATCGGCCAAATCCTGCTGGATGGCCGGTGTGACCTCAACGCGGTCAACGTCCACGGCGATTCGCCATTGCACGTTGCTGCTCGCGAGAACCGACTGGAGTGTGTGGTGCTCTTCCTCTCACGTGGCGCAGACGTGAACCAGAAGAACCAAGAGGGAGAGACACCCCTGGAGTGCTCCATCCACGGCTCCAAGGTGTGGGCCGACCTGCTGACCAATAAGAAgctgagggaggcggggagtaTCAGTGGAAACCACAGGGAGAGGGTCCTTAATAGGGACGTCTCCCAGGGGTACGAGAGGATCCCGGTCCAATGTGTGAACGGGGTGGACAGCGAGCCCTGTCCCGAGGACTACAAATACATCCCAGAGAGCTGCGTCACTTCCCCCATGAACATAGACAGGAACATCACACACTTACAGTACTGTGCGTGTAAAGATGACTGCTCATCCAACAGCTGCATGTGTGGCCAGCTAAGTCTCCACTGTTGGTATGACAAGGACGGTCGTCTGCTACGCGAGTTCAGCTGGGAGGAACCCCCCCTCATCTTTGAGTGCAACCACGCCTGCTCCTGCTGGAGGTCCTGCAAGAACCGAGTAGTACAGAATGGACTGAGGACCTGCCTGCAGCTGTTTCGGACCAGGAGGATGGGCTGGGGGGTGCGAGCTCTACAGGACATCCCACAGGGGACCTTCGTGTGCGAGTACGTGGGTGAGATCATCTCTGACGCAGAGGCTGATATCAGGGAAAATGACTCCTACCTGTTCAGCTTGGACAGTAAGGTGGGAGAGATGCACTGCATCGACGCCCGTTTCTACGGAAACATAAGCAGGTTCATTAACCACGCGTGTGAGCCCAACCTGATCCCCATCCGGGTATTCACCGTCCACCAGGACCTGCGCTTCCCCCATGTCGCCTTCTTCGCCCGCAGGCACATCAGTGCCGGGGATGAGCTCGGGTTTGACTATGGCGATCACTTCTGGGAGATCAAAAGCAAGTATTTCAGCTGTCAGTGCGGCTCGCTCAAGTGTCGGCACACCGAAGCTACCAATGCCCACAGACTGGCGGACAGCACCCCCGAGGGGAAACGACCAGGCGCCCTGCCTGACACCAGCTCCACCACCACCCCCTCAAGCCCCTGCTGAAGTCCTCAATCCAGCAGGGCCAGGATCAGCCAGCCGACACAAGATCAGCCAGTAGAGCCAGGATCAGCCATCAGAACCAGGATCAGCCAAGGGAAGCAGAATAAGGCATTGGAGTGAGGATCGGATGGCACACGTGATAAGTCAGTAGACGTTCGGTCAACAAGCAGAATCGGGATCACTTTAACAAATGAGAAACAAACTGGCGAACCCTGGATCACACCAAAGAGTGAGAAACAATCGACATAAATGCCGTCCACTAGGACGGTCTGGCTCCACCAGCAGAAACGACATAATCAGTAGAACCAGGATCCGCTACCGGAGTCAGTATCTGCCAGCAGAGCTAAGATCAGCCAGGAGAACCAGAATCAGCCGGCAGAGCCAGGATAAGTAAGTAGAACTAGGATAAGCCCATGGAATGTCATGTTGGTCAAGTATAATTTATCTGGCTTTTGCTAGTTTGTTTGCAGACACGTTGGCATGTTCTGTTGCTAAAAAAACAAACCGACATGCATACATCTCAATAATGGatgcttgagaaaagcatgcagTGATAGCCACAATATTTTCTTAAACACAAGGAATGCAACCGTAAAAACAAACCTCTTTGGCTGGACATAAATACTGAACCGTCTTTGGACAAGAAAGACGGTGCTGAGAaatctttgttttatttgttttacttgAATAAATACAagttgtaaagaaaaaaaaataggatTGCAAAATGTTTTTTAACCTTTTAACTGCGTGCTATCAGTTTTTAAGTAGTATTCTGTCTATCAATTATTTCCCTTTATTTTGTACTGATGGTAAAACTACATAATTTCTGACTGTCTGTGATCTTTTGTATCATGTTAAACCTCCATGAGATACAAATCTGTATGAAAACAATTGTCACATACAACTGATGTGTGAAATATGATGCTCTGCCCAATTGATTGCATCTTTCTTTTTCAATAAATTTACAGGGAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856	SET	SET domain	Family	Interproscan
PF05033	Pre-SET	Pre-SET motif	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13637	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF21533	EHMT1-2_CRR	Histone-lysine N-methyltransferase EHMT1/EHMT2, Cys-rich region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214	Domain	SET domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR007728	Domain	Pre-SET domain	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR043550	Family	Histone-lysine N-methyltransferase EHMT1/EHMT2	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan
IPR047762	Domain	EHMT1/2, cysteine-rich region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46307	G9A, ISOFORM B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0002039	Molecular Function	p53 binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006306	Biological Process	obsolete DNA methylation	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016279	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0018027	Biological Process	peptidyl-lysine dimethylation	Interproscan
GO:0042054	Molecular Function	histone methyltransferase activity	Interproscan
GO:0046974	Molecular Function	histone H3K9 methyltransferase activity	Interproscan
GO:0051570	Biological Process	obsolete regulation of histone H3-K9 methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-