Gene detail

Detailed information of SKAU_T00004660 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00004660	VESICLE PROTEIN SORTING-ASSOCIATED	CM056376.1	9386639	9406129	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00004660

ATGAATGAAGTCATCAAGAAGGTGAAAAAGAAGGGGGAATGGAAGGTTCTGATAGTGGATCAGCTCAGCATGAGGATGCTGTCGTCCTGCTGCAAGATGACAGACATCATGACAGAGGGCATCACCATTGTTGAAGACATTAACAAGCGGCGTGAGCCGCTGCCCAGCATGGAGGCAATTTATCTCATCACTCCATCTGATCAGtCTGTGCAGGCTCTCATCTCAGACTTCAGAGACCCACAGTCACCCCAATACCGAGGGGCCCACGTCTTCTTCACTGACTCATGTCCGGACCTCCTGTTCAAGGACCTGGTGAAGTCGCGCGCTTCCAAAACCATCAAGACATTGACCGAGATCAACATCGCCTTCCTACCCTATGAGTCACAGGTGTACTCTCTGGACAGCGCAGATGCCATCCAAAGCTTTTACAGCCCGTACAAGGCCCAGCAAAAGAACCCGGCGATGGAGCGGCTAGCGGAACAGCTGGCCACGCTGTGCGCCACCCTGAAGGAGTACCCTGCCGTGAGATACCGCGGTGAGTACAAGGACAATGCAACTTTGGCTCAGCTGCTTCAGGATAAGCTGGATGCATACAAGGCTGACGATCCCACCATGGGAGAGGGTCCAGACAAGGCACGTTCACAGCTGATCATCCTGGACCGGGCGTTCGACCCGGTGTCCCCTATCCTGCACGAGCTCACATTACAGGCCATGGGCTACGACCTGCTGCCCATCGAGAACGACGTCTACAAGTACGAGACCAGCGGAATGGGAGACTCTCGGGAGAAGGAGGTGCTGCTGGATGAGGACGATGACCTCTGGATGACCCTGCGACACAAGCATATTGCAGAGGTGTCCCAggCAGTGACTCGCTCCCTGAAGGAGTTCTCCGCCAGCAAAAGGATGAACACTGGAGATAAAACTACCATGAGAGACCTGTCCCAGATGCTGAAGAAGATGCCTCAGTACCAGAAAGAGCTGAGCAAGTACTCCACCCACCTCCACCTGGCAGAGGACTGCATGAAGCACTACCAAGGCACAGTGGACAAGCTGTGCCGTGTCGAACAGGACCTTGCGATGGGCACAGACGCAGAGGGCGAGAAGATCAAGGACCCCATGAGAGCCATTGTGCCCATCCTGCTGGACGCCAACGTCAGCACCTACGACAAGATCCGCATCATCCTGCTCTACATATTCCTGAAGAACGggatcACAGAGGAGAATCTGAACAAGCTGATTCAGCATGCACAGATCCCACCAGAGGACAGTGACATCATCACTAACATGGCTCACTTGGGAGTGCCCATCATCTCAGATTCCACCCTGCGTCGTGGTAAGAAACAGGACCGTAAGGAGCGCGTCAGTGAGCAGACGTATCAGCTCTCCCGATGGACCCCATTGGTCAAGGACATCATGGAGGATGCCATTGAGGACAAACTGGACACCAAACAGTACCCCTACATCTCCACACGGTCCTCCGCCTCCTTCAGCACCACAGCTGTCAGTGCCCGTTACGGCCACTGGCACAAGAACAAAACCCCCGGGGAGTACCGCACGGGACCCAGAATCATGGTCTTCATCGTCGGAGGCGTTTCCTTCAGCGAGATGCGCTGTGCCTATGAGGTCACGCAGGCCAACGGCAAATGGGAAGCCATCATTGGGTCAACCCACGTGTTCACCCCCACCCGCCTTCTCAACACCCTCAAGGACATGAATAAACCAGAGGAGGAGCCAGACAGCTAAAGATCAaataccccccccctccaccttcAACGAACCTCTCTTTCCTCCGTATTAAATGTGTTCGCATATCGCTAGAGAAAAAAGTTAAACAGATATCGAttaggaaaaaaaacatgttatattgtTGCAGAAACCTGTTTTACAATGGATGCGCATAgatgagaatttaaaaaaagagctaGAACATTGAAGAAAGCCACTGGAAGTACCAGACATAAGATTGTATTGCTTTATGAAAACCTGCTGGAATGTGTACAATTTACAGACATCGTGTGGTTTCCTGTGGTTATTTTAATGGCGGTAATGAGTCATCAGGCAAAGGAGGGCTGTGTGGAAGGTGACCGCGCAGGAAGAGCTTAAAAGTACACAGGGTGCAGCATGTATGCGCTGTAATGCTTGGACACAATTAGAGCACGGGGTCTGGAGGAAAACCCTGGAGACTTTAACATCAGTTACATGTTTGTTAGGAGGCAGGAAGATGTTTGATTGTGCTTCCCATAATGAGACAGACAGAGATCGGTTAGACAGCTGCACCTGAAAACAAAAGATGTCCTAAACAGGAACACACGTGTAACCCAAACATTTGCGTTAAAGGGACCAAGACTATACAAATGAAATGTCAGTATCCAGTTTTCAGATGAGGGAAAAGAGATACTGAAAAGCAGTTTACAGGATTTCCTTAGCGCGGCTAATGCCGTCCGACGTTTTGCGAGGGGGGAGGGGTTAAGTTGGGGTTCACTGCCTGGTGTCTGGTTCAGAGGAGAATTCACGTTTTAGTGTCAGTGAAGGTTGTTTGTTCGCAACTTTATAAAGAATGTTATACAAAACAGGCCAGTTTTATGTCAGTATTGTAGTCTGTGAAATGAAGTCTTATCATTGGTTCTTATTAACATTTAACCCTCCTCCAGTGGAGTCCTGTCTTGTGTATATGCAATGTTTTTTGTGACTCAATGTTTCTAGTGATATTTCTGACTGTGAAAATAGTTCCTATTTGAACATGCCTGTATAAAGCCACTGTAATTGTGATGTAATAGATGTAGCTAAAGTGATTAAATGGGGTGAAAAATATCCAGATTTTACTAGTGCGTATCTCATCTGGTGCACAGTGAAAAAAGGCTTATTAAAAGTAAAATCACAACTCTGTAGATCTTTTCCCTTTTGGTTTCAGTTTagcatttttttccccaattcaGCCACACCCCTTTCTTAGGCTAAACTGCATATTGCACTATGCGtcatttagttgtttttttgttctttatttttgtcattatctAGCCATCGGCGTATTAATTTCTATCAAAGTTATTTATCGGAGTGAAAATGTTAATAAAGTGAATTGGTCTTAAAACCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00995	Sec1	Sec1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001619	Family	Sec1-like protein	Interproscan
IPR027482	Homologous_superfamily	Sec1-like, domain 2	Interproscan
IPR036045	Homologous_superfamily	Sec1-like superfamily	Interproscan
IPR043127	Homologous_superfamily	Sec1-like, domain 3a	Interproscan
IPR043154	Homologous_superfamily	Sec1-like, domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11679	VESICLE PROTEIN SORTING-ASSOCIATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006904	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0007269	Biological Process	neurotransmitter secretion	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0017075	Molecular Function	syntaxin-1 binding	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan
GO:0030141	Cellular Component	secretory granule	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-