Gene detail

Detailed information of SKAU_T00004060 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00004060	GUANINE NUCLEOTIDE EXCHANGE FACTOR	CM056376.1	7927034	8107230	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00004060

CTACATTGACTATTTGTCAACGCATCTGTCTATCAAGTTAAGTAGCTATACCTACCTGACACTTCCTGATGTCACGACCCAGCTGTTGGCAAAAGACTGTATTTTTTCGGGTCGTAGACTGCACTTACGCTTCACtgccatgttttttttctgtatgcATTGATAAATTGTGCATAACGAGGAAATGGTACGTCACCGATGAGAAATAATGCACCATTGCATTGGATATAATCTACTCTCGATCAATTGACGAACACATTTAGCTAATCCTGCACACAGGTAGCTTCATTTGgaatacatttagatttttttgggaGAGTGCAAGGTTGTGATAGAAATACACTCGCGGTTGCCTTGGAAGGATTGAATCTGCCAGCAGTCCGACGCAACAGCGAGGGTCTGACTGATCTCGCCTTTGGGGAGGTGCTTTTCTGGGACATTGCTTCGGGCCCGGCGGGGGAATGGCCCGACCGGTGATACCGCTGTGAATGGGTCAGCTGTACAAGACCTGAGTGAAGTCCAATATGGGGATGGATGAGAGGTCATGCGTGTCGTTCAGCTGAGGCTCGCGGTGTGCCCTCCCCGCTTACCTGGCCGCCGGCATGTACAGGAGGAATGGACTAATGGCCAGCGTAACGGTCACCTCCGCCACTCCAGAGGGAAGCAGCAGCTCGGAGTCCCTGGACGGGCGGAGTGTGGACTATGCCAAAAGCTACGATGCTGTCGTGTTCGACGTGCTGAAAGTGACGCCGGAGGAATTTGCTAGCCAGATTACCCTCATGGATGCCCCAGTATTCAAAGCGATACAGCCAGAGGAGCTGGCCAGCTGCGGGTGGAGCAAGGAAAGAGAAGCACAGCCTGGCGCCCAACGTGGTGGCGTTTACCCGCAGGTTCAACCAGGTCAGCTTCTGGTTGGTGAGGGAGATACTGACGGCGCATACCCTGAAAATCCGAGCAGAAATACTGAGCCACTTTGTTAAAATTGCAAAGAAACTACTTGAGCTGAACAACCTCCATTCGCTGGTGTCCGTCGTGTCTGCCCTGCAGAGTGCCCCCATCTTCAGACTCAGCAAGACCTGGGCGCTGATAAGCCGGAAGGACAAGGCCACGTTTGAAAAGCTGGACTACCTAACGTCAAAGGAAGAGAATTATACGCGTATGAGGGAGTACATCCGGTCACTGAAGATGGTCCCCTGCATCCCCTACTTGGGGATCTACCTGTTTGACATGATCTACATTGACTCGGCTTACCCGGCCTCCGACAGCATCATCGAGACGGAGCAGAGGACCAATCAGATGAACAACCTCCTCCGGGTCATCTCCGACCTGCAAGTGTCCTGCAACTACGATCACCTGCTGATGTTGCCACATGTGCAGAAGTACTTGATGTCGGTGCGCTATATCGAGGAGCTTCAGAAGTTCGTGGAGGACGACAACTACAAGTTGTCTCTGAAGATTGAGCCAGGGAACAGCTCCCCACGCCTGGTTTCCTCCAAGGAAGATCTCGCAGGTCCCTCAGAGGTGGCTGCCTCGGTGAGGTACAACCGCCGGCCCACCTGCCCCGACACCTCTGTCGGCGCCCACCTGCCCACCCCGCCCCCATCCCGCCACAGAAAGAGCCACAGCCTGGGCAACAACATGATGTGCCAGTTCAGCGTTGTGGAGAGCAAGAGTGCCACCTTCCCCACAGAGAAACCGCGCCACCTGCTGGACGACAGCTTCCTGGAGTCCCACAGCCCCGCACGGAACCACGCACTTAACTCTTCACACATCTTCACCAACGGCCTTTCCCGAGGTAGCAGTGAAAGTTCATTCAGTGAGGAGCTCTCATCGGGAGTGGAAAGGGGCCGCATGTATGCCACACTGGGCCCCAACTGGAGGCTTCCGGCCGGGAATTCCCCCCGCAGCCAGAGCTATATATACAGcccgtcAGGTGCAAACTCCAGCTACGAGTGCAGCGCTCTGGGCTTCACTATGGAAGGCCCATTACGGAGGAAGACCTTGCTGAAGGAGGGCAGGAAACCAACGCTGTCTTCCTGGACACGTTACTGGATCGCCCTGTCTGGTTCTACCCTCATCTACTTTGGAGCCAAAGCTCTCAGAGCATCTGAGAGGAAACATTACAAATCCACGCCCTGTAAAAAGATCACCATCACCGGATGGATGGTGGTGCTTCCCGACGACCCGGAGCACCCCAATATCTTCCAGCTGAATGACCCTGATAAAGGCAATGTTTACAAGTTTCAGACTGGATCCAGGTTTTCTGCAATAATATGGCACAAGCACCTGGAGGAAGCCTGTCGGAGCAGTAGGCCCCAGATACCAGCCAACCTTATGTCGTTTGAGTAGCCTCTGCCTGACGATTGCCTTGCAGAGTAAAGTGCCAACCCCATCCTGATGAGAAGGCCAGAATGGAACACGTGGAAAGGCAGGGGTCTGAGCAGAGAACATTGAAAGCACTTTATCGTGCCACATAATTGCAGTAGGCAGAGTGGATGCTCGCCTGTCCCGCTGCCCCCCAGGCGGCGTACCCAACATTTTGGTTGGAAACGGAAAGAGCTGACGGACTcatctgaaggggggggggggacaaatgtagcgtttgtttcttgttttctttttaatgGCAGGAAAAGGACTGGAGCTTGCATTGGAAGGTTGCTGTTTGAAGGAAAGGGGTGAAGAGACgtagcagacccccccccccccgtgtggaGATTCCTGCCAGGCTAACATCACTGATTTCtatctttttgtgtttttttttttttttgtcacgctGCTTCATGTAAGTGGGGGGAAAATAGACGTTAGCCCATGTTGGGTTTTAAATTAAAGCAAACGAAAAAGAAGAAATGCacagagaagaaaaaaacaaaacaaaacaactacTGACAGTGTTAAAATGGATTATAAGGGAGTGTAGAGGGAAGCAGGAACTCTTCACGTCTCAGGACTACTGCCCTATCCAGTAGGGGGCGCACTGCGGGAGGTTCACTGACTGGCCCTTCCGCTCGACTCACCTGCTCGGAATGCAGAAATCCAATGCATTTTGGCACCCTAAGAATTTACTTTGACCCAAGATGAGTTAAATATACGTATGTAATACAATACATACTGGTCATGCAAAACGACATTAATTAATCAATTGTTTAATGAGTTACTTAGGCTGTTGGCTTTGTTGGAGAGGTACACAAAAACAGAAGATATCATGTTCCCACAGGTCACTATACTATAGCTAGGCAAGCAGCTTATCTTACTTGCTGAAGGCGGAGAAGGGTGCGGTTGATAAATTCCCAGCCACAGTGCACAGTGTGAATGAACCTTATGGACTTTTCagtacattacagtattatacagTAAACTGTGAGCCATGCCGTCAACAAATGAGGTCCCTCTTATCACCTTTCAAATTAAGTTTAATTGCAAATTGTACACCCAGGGACTGTGTTATAATAAACAATATTTTTGGAATTAATTCTCTACGAAGAGGAACATGCAGCCCACTGAACTACAGGATAAGTCCATGACTGTGCCTCCAGGGACGCGGTTATTGTCGTTATAATGTTATGTTGTCATTTTTAAGGTTTGTTCTACTGAGCcggagattaaaaaaaattataatttgggCTGTGTCAACGATGTAATACATGTGCTTTAGTAACTGTACTCATTTAAAGAAGtgtaaataaagctgtttccctgtTTTATTCAGGTTTACTGCACTGTAGTAGGAAGCACATCTGCACCTGTATGTTGCACCTGTATGTTGCAGactcctcccccaccccacccactccTTCCTTGCCAATTTTGTTGTGCATTTCATTCTCATGAGAGAAATCTTCTTATATAATTTGAAAACtatcatgtatatatatatatatatatatatatataagctcacacacatatattatatacagttgaagtcgaaagtttacatacaccttagccaaatccatttaaactcagtttttcacaattcctgacatttaatccttgtaaacattccctgtcttaggtcagttaggaccacaactttattttaagaatgtgaaatgtcagaataatagtagagagaatgatttatttcagcttttatttctttcatcacattcccagcgggtcagaagtttacatacactctgttagtatttggtagcattgcctttaaattggttAACTTcagtcaaacgtttcgggtagccttccacaagcttctcacaataagttgctggaattttggcccattcctcctgacagaactggtataactgagtcaggtttgtaggcctccttgctagcacacgctttttcagttctgcccacaaatttttgatcaggactttgtgatggccactccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgctttgggtcattgtccatttggaagagagcgaccaagctttaacttcctggctgatgtcttgagatgttgcttcaatatatccacataattttccttcctcatgatgccatctattttatgaagtgcaccagtccctcctgcagcaaagcacccccacaacatgatgctgccaccccccgtgcttcacagttggggtggtgttcttcggcttgcaagcctcaccctttttcctccaaacaataacgatggtcattatggccaaacagttcaattattgtttcatcagaccagaggacatttctccaaaaagtaagatctttgtccccatgtgcagttgcaaactgtagtcttgcctttttatggcggttttggtgtagtggcttcttccttggtgagcagcctttcaggttatgtcgatagaggacttgttttactgtggatatggatacttttgtacctgttccctccagcatcttcacaaggtcctttgctgctgttctgggattgatttgcacttttcgcaccaaagcacgttcatctctaggagacagaacgcgtctcctttctgagcggtatgacggctgcgtggttccatggtgtttatacttgcgtactattgtttgtatagacaaacgtggtaccttcaggtgtttggaaattgctcccaaggatgaaccagacttgtagaggtccacaattttctttctgaggtcttggctgatttattttgaaatgGCAGTTCTGATTCAAATTCATAGTTGCCATCAGGCGATGAAAATGACATGACATTAATTGGTAATACTTTTCCAGTGACCCCCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169	PH	PH domain	Domain	Interproscan
PF00617	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-