Gene detail

Detailed information of SKAU_T00003600 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00003600	ADHESION G-PROTEIN COUPLED RECEPTOR	CM056376.1	6920633	6956384	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00003600

Transcript

SKAU_T00003600

ATGCAGCAGTCTTGGATGAACAGAGGTGTGGATGAACCCCGAGCAACTCTCCAGACCCTGGAGACAGTGTTCCAGCTGATCAACATCTCCCTGGACTTCTGGCAGGCTGAACGCTTCTGTCTGGTGCAGTTCAGCACTCTGGCCACCATGGGGCGCCACGGGGACGAGAACGGCACAATGAAGCTGCTGAAGGAGGCGGGCCTGGACAAGCCTGTGTGGGTCAGAGACCCCGGTAGACTAACCGGGAGTTTGCCGGCACGCTCCAAACAGTACATGTCTCTGCCTACCCTGACCTTCCCATGGGAGTCTCAAGAGGGATTCGCCCGTCTGGACCTTCGGTTCCCGCCGCTGGCGGCTGTCAGCGTGTGCGTCCGCGTGCAGTGGGACCTGCGCCACAACCAGGTGTCCACGGTCTTCTCCTACGCGGCTCCGGTGTTCACCAACGAGTTCCAGCTGCGGGGGCGCGTGGATGGGGCGGGGCGCATCCTGCTGGCGCTGATCGTGCACGGGCAGCACAGGCCCTACAAGGCCTCCTTCCCCAACGACGGCGGCTGGCACCAGCTGTGCGTCACCTGGCGCCGGCGAGACGGCTACTGGGCCATCTATGTGGACGGGGAAAGGCGGGACACTGGGTCCGGAGAGGACACGCCCAGGGATATCCACGGGGAGGGCATATTCATCATTGGGCAGGACCAGGACTCGTTTGGGGGAGACTTCACGGAGCCCTTTGTGGGTAACGTCACGGATCTGAGAATTTGGGACACCGTGCTGGGGGAGAGACAGGTCCTGGAGCTCCACGGCTGCTCCCAACTGACCCCAGACCCACTGTTTCCCTGGAGCATGAGCAACATGACACGCCACCCCGATGTGAGACTGATTCCAGTCCAGCTGCACTGCCCATCTCTCTACAGGCAGACAAAAGCCAATAACTGCCAGGCTCTGGAGACCTCCGCCTCAGGACAGCTTCCTCTCTACAAATCTGTCCCCTGCACAGACACACTGCCCTTCATATGCACCACCAGCACAGAACGCTTCGCGAAGAAGAAGGAGCTGAACGACATGCACAGCGGGAAGCCAAGCTCCTTCATGCAGCAGCTGATGCAGCTTTCCAACAGCACCCTGACACAGGTAACAGAGGGGCTGGTCCCCGTTGAGCCTCAGAGGCTGACCTGGGGTCAGGTATCCGGCCTGCTCAACGTTTCCAGGCAGGCTCTGGAAGAGTCGCCGGCTGACCTGGAGCCCTCTGACatgcttcacctggtccaattCCTGGCTCGCGTGGCAGAAGTCCCGACGCACGCGAACGAGAGTCACGATGCTGCTGCTCTCACTCGTCACTTTGTCACTGTGGCCGACAGGATCATCAGTCAGGAAAATGCTCCCACGTGGCATGCTATTAAACAGGTTGTAAATGGACCAATGGCAGTGGTGGAGAGTATTGACAGGATGGTGACCAATCTACAACCTCTGATAATGGCAGAGAGTGACACAATTCTGATCCAGAGTGACAATATCAAGCTGGCCGTCCAACAGAAGAGTTTGGCGGATGATACCACTGGTTCTGAGTTCTGTGGACTGGACTTTGATAATGACACCGGCCTAGACTGCATCTCAGTCCCGACCCAGGATATGCAGACTCTTCATGACATTGGCTTCCAGAAGGTTACCCTGATGAACACTTGGTACGGGTCTCTGCGCCCGCTGTTTCAGACCCAAAGCAACGTCACCCTGTTCCCTGCCGTTAGCGACGGTACTCAGAAGTATCTGAGGACAGTACTGGGGTCTTCTGTCATATCCAGCACGGTGCTTGGGGACGGCCAGCCTCTCAGCATGGCGGTTCGTTTCCAGCTCCAGCACAGACCTGAGAGCCTTCCTGGGACAGCATATGATCCCGCCTGTGCGTTTTGGGATTTCAGCCTCACGCCGGAAGCAGGAGGGGGCTGGTCCACAGAGGGCTGCCAAGTCATTTCCACCCGCAAGAGCTCCACCTCCTGTTACTGCAACCACACGACTAACTTCGCTTTGCTACTGCAGGTCTACGAAGTCCAGAGGAGTCCAGAGGACCAGACTGGCCTGCAGGTCCTGACTCTCATCGGCTGCGGAGTGTCACTCTGTGGCCTCATCCTCACCTTCATCCTCTTCGTCGCTGTGGGTGTACCCAAATCGGACCGGAACACGGTCCATAAGAACCTCATCGTGGCGCTGGGGACCGCTGAGCTGCTTCTCATGTGCAGCGACTCGGCATCGCCCCACCAGGAGGCGTGCCTGGTGGTGACAGCAGGGCTGCACCTGTTCTTCATGGCCTCCTTCACCTGGATGCTGGTGGAAGGTCTGCTGCTGTGGAGCAAGGTGGTTGCTGTCAACATGAACGAGGACCGCAGGATGAGGCTGTATTACCTAATAGGCTGGGGTGTGCCGGTTGCCATTGTCACTGTGACCTTGACAGTTTCTTTTGACAAGTACAAGGCTGACAATTACTGCTGGCTCAACGTTCAGACTGATATCATTTGGGCCTTTGTCGGCCCCCGTACTTTTTGTTCTGGCGGTCAATGCAGTGGTACTATGCCGGGTTGTCATGGTGACAGTGTCAAGCGCTCGACGGCGTGCAAAGATGCTCACACCAAGTTCCTCTTCCCAAATACATGCATTGGACCTCACTTGGGCTGCGACCCGGCCAGTTCTGATCTTGTTACCGGTTCTGGGCCTTACCTGGCTGTGTGGAGTTCTGGTGCACCTGTCCTCAGTCTTGGCCTACCTGTTCATTGCACTCAATGCATTCCAGGGCCTGTATATCTTTCTAGTGTACGCTGTTACAACAGTGAGGTGAGGAATGCCATAAGGAGGATCAAAGAAAAGAGGAAGGCGTTGTCCTTTACGAACTGCTCCCAGCCAATCAGCTTCCTTCCATCGCAGAGAACAACCACTGCCTCCTGGACCCACAGTGTCCCGGCGCCGTCCAGCCCAGAGACCAGCGATACCTCCGCGCCAGGCAGCACCTCCTGTGGATCCCTGGTCATTAAAAATGAGAGTTTCAGGAAAGAGAGCTTTGTGAGTTTCTCCTTGAAACCAGCCACAGATAATCAGGTGGTTCAATTGACAGCCTTCAAGCCATCAGGTTGCTAACTCCTAACTCAGTCCACTGAAGATGCATGAGCTCTATGAAGTACAGGGTGACCGACACATGCAGTACATGCTCCCGGCAACACGCATACTGAAGCAACATACAACTAGAGAATGGTGATTGGCTATATGGGGGCATAGACAGGGTGTATTAAGGAGATTAAGAAGAAAGAGGATGACCCCCATcaccccccactcccaccccaaCCCTCTATCCTCCCATGATCCTCTGCAGTATGCAGTTCCCAGGGTCAAGACTCACCTGTTGTTTGGGAAATGGATGTTCCACAGAGCCGACGATTTTAAACACTGGCTTCAATCTGCAAACATCACAGCAATTCCTGTTCAGTACAAAGCCATGGGAAAAAAGAACTGTGCCTTCAACTTTTTATTTGTATGCTTATTTTCGTACATTTGTTGTGAGAGTCCTGTACAGTAGTATTGTTGCAATTaaacaaatcaatcttctcatctcTGTTTGAAAATCAAGTCTTTTTAGGATATGACCAGACAATATGATCATGTTGTCAGCATATGTATTTGTCAGTCAGATATAAAATTTAATCTCCATCCCTAGCAAAGATTCCCTTTACTGAACTTTAATGTTGCCCGCGCTATTCCGCTGCTACAGTCATTGGACAAAGCCTACATGCTCTCTGACCAATCAGAAGCTGTATTGAAGGCTGCTCTGGTATAAAGTAGTTTTTTCTGCGTGTTCCCCACCATATTGTATTTACCAACAAGCTTGGTAAGACACACTGCTCCGTTCCATACTTCAGTCAACAACACAGACACAGAATTGTCTGTCCCCCCATTttaagacaccaaaggtaattggacaaattaacataaacttaaataaagtcatcatatttaatatttggttgcatatcctttgcatgccacgacttcttgatgtctgtgacccaacaacatcaaaagagtcttgatatcttgttttcaggtactcttacaagcgatagctactataacctctctgcatttcaatggatctctgtgggaattggggggactatattaagctgtagattacacggtaatagtgtatatatatatatatatacacacacacagtatatcctttttttatttcataCATTGTGCTGGAATTGTATTGTGAGGTTAGGTAATATGCTGTCACACGCTGGCTCAATTTCTCCATGGTCCTGTGTGGCCTTTGGAGTGAAGATTTTGTACAGGTCCAGTTGGACCTCTGtgcttcctctttttttttttttttaaacatagcctTTTATAAAATATTGATTTTGAGTTTTTGTTTAACACGCATTGTGCTACTTTGTGGATGGTACACATTGTGCACTCCTCATGTtaaagtcagtttttttttttttaattaccctTAAGTAGTTCATGCATTCGTGCATACCTGACCACTCTTTGTGAGCAGGGTCTTATCCTCCTATTGGGTGGGGCTTATCCTCCTATTCACCATCAGCAATCACGTGACTTCATGGTGTTCAATGACTGTCATTCACACTGTATTGTATCGTCATGCATGAGTAAAATGAGAGGTCATGGCCATCGATGTCTCCAAAATTACAACTCCACCTTCTTCTCAGTGTTGAAAAAGGaataaaattgtttttttaagaaaatgaaaaTTGACACATGTATAGATTTACTAAATTGCATTTATTGATTTCAAACtattacaataaaatacag

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF00354	Pentaxin	Pentaxin family	Domain	Interproscan
PF01825	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF16489	GAIN	GPCR-Autoproteolysis INducing (GAIN) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000203	Conserved_site	GPS motif	Interproscan
IPR000832	Family	GPCR, family 2, secretin-like	Interproscan
IPR001759	Family	Pentraxin-related	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR017981	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR032471	Domain	GAIN domain, N-terminal	Interproscan
IPR046338	Homologous_superfamily	GAIN domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12011	ADHESION G-PROTEIN COUPLED RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007166	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0007189	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-