Gene detail

Detailed information of SKAU_T00003180 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00003180	GUANINE NUCLEOTIDE EXCHANGE FACTOR	CM056376.1	6054938	6084474	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00003180

ATGGTTTACCTAATGGGAATGCAGTCCGAGACGCAGACAGTCAGATCTGGGTCTTTCGATGTGATGTTTGATGCCAGCACATGGAGGGTACGCAGCATCTGGGATGgggtgaggctggaggtggccgGGGACGCGAGCCCGGTTGTCCTCCACAGCTTCACACAGCTGGACCCGGACCTACCTCTGCTGGAGAACTCGACCCAGGAGATTGGGGAGGAAGTGGAGGAAGGGGCCATCTACACCATCACCTTGCGGAAGGTGCAGGTGCACCAAACAGCCAGCAAGGGGCAGCGGTGGCTCGGGGTGGAGACGGACTCCGCCCTCAGTCTATACGAGACCTGCAAGGTCCGCACCATCAAGGCCGGGACCCTGGAGAAGCTGGTGGAGTACATGGTGTCCGCCTTCCAAGGCAACGACTCCACCTACGTCACCATCTTCCTCTGCACCTACCGCTCCTTCGCAACAGCCAAGCAGGTGCTGGACCTGCTTCTGAACAGGTTTGCTAAGCTGCAGCATCACTCCAGTGCAGAGGGGCCCAGAATGACCCACGATGACCGCACAGAGCTGAAGAACACTATCTCGTCCATCCTGGGAGCCTGGTTGGATCAGTACTCTGAGGATTTCTGGAAGCCTCCGGAGTACAGCTGCCTTCGGCGCCTCATCTCCTACCTGCACCTCAACTTCCCGGGATCGGACCTGGAGCGCCGAGCCTGCAACCTGCTGGCCCAGTTCCACCGCCGGCACCGAGATCCAGAGCAGGAGGttttggACCACAGCACCTGCACCTTCACCATGCTGGAGGAGAACGGCTACGAAGACGAACGCCCGGACTTCCTGTCCTTTGACCCAGCTGTGGTGGCGGAGCAGTTCACGCTCATGGATGCGGAGCTGTTTAAGAAGGTGGTCCCGTACCACTGTTTGGGGAGCATCTGGTCCCAGAGAGACAAGAAGGGGAAGGAGCACCTGGCTCCCACCATCCGGGCCACCGTGGCCCAGTTCAACTGCGTCACCAACTGCGTCATCGCCACCTGCCTGAGCGACCGCTCTCTCAAACCCACGCAGCGAGCCAAGCTGGTGGAGCGCTGGATCGAGGTGGCAAGGGAGTGCCGGTTTCTGAAGAACTTCtcctccctgcgtgccattctCTCTGCCCTGCAGTGTAATTCAGTCCACCGGCTGAAGAGGACATGGGATGAGGTGTCCAGAGAGAACTTCAGAATCTTCCTGGAGCTGTCGGAGATCTTCTCGGATGAGAACAACCACTCCCTCAGCCGGGAGCTCCTCATCAAGGAGGGGACCTCCAAATTTGCCACCCTGGAGATCAACCCAAAACGAGCGCAGAAGAGGCACCAGCAGCAGAGAGATCTGGGCGTGATGCAGGGGACCATTCCGTACCTGGGCACCTTCCTGACTGACCTGGTCATGATGGATACCGCCATGAAGGACTTCATGGATGGGGGGCTGATCAATTTTGAGAAGAGAAGAAAGGAGTTTGAGGTGATCGCCCAGATCAAGCTTCTGCAGCTGGCCTGTAATAACTACAGCTTTACGTGTGACAGTCACCTCAGAGAGTGGTTCTCTGGTGTGGACAAGCTCACCGAAGCCGAAAGCTACAGCCAGTCGTGTGAAATTGAGCCTTTGTCGGAATCTGCCAGCAACACTCTCAAAGCAAAGAAGAACTCTGGAATTATCAAGCGCTGGAGCGAtcgACAGCCAGCGAATGCTGAGGCTAGCTGTAGCAGCGCAGGAAGCTCCCATTCGAAGTCTTTCGACCAGCTGCGTTACGGATCTGTCCTGGGGAGTTCGGGCGGCGGCGACGGGGGTGACACCCTCAGTGTCACCTCCGCTGGCTCAAGCAGCTCTGATGTAGAGGAGGTCAACATCAGCTTCATCTCCGACTCGCCAGACACCCATGAGAAGAAGACCTCCACGCCTACAGTAAAACATTCCAATTCTACCTTAGGGAAGGGAGGCCTGATACCAGAACCCACTCCCACGTTCTGGGAGTCCACCTCGCTGTCGTCTCTGGACACCTCAGGGATGGGCTCCGGCTCGGGCTCGAGcagcgcctcctcctcctccatgtcCTCCACCCCCGTCACGGCCTCCCGCTCCCACAAGCGCTCTGTTTCAGGGGTCTCCAGttactcctccctctccctgccaCTCTACAACCAGCAGGTGGATGACTGCTGCATCATCCGCGTCAGCCTGGATGTGGACAATGGAAACCTGTACAAGAGCAtcctgGTGACCAGTCAGGATAAGACCCCAGCGGTCATCAGGAAAGCCATGGTCAAACATAACCTTGACCGTGAACGGCCGGAGGACTACGAGCTCCTGCAGAAGATCTCAGAGGAAAAAGAACTGAAGATTCCAGACAACGCCAATGTGTTCTATGCCATGAATTCTTCCGCCAACTATGACTTTGTGCTGAAGAAGCGGGGGTTCCCGAAGGCGGGGCGCACCAAACACGTGGCCAGCTCCACCCTGCCCCGCATGAAGCAGAAGGGCCTCAAAATAGCAAAAGGAGGCCCTCTGGGTTGGTGCTGA

Transcript

SKAU_T00003180

GTAGCCTACACGGTGTGACTAGCTGCTAGCGGCAAATCGAGAAAGCAGTTAACACCCCATACGGTTTATACCTTTCTAAACGCCGAACGCCGTTATTTTACAGAACGAAAGCTTGACCGAGTCAACTGCTTAATCCGAGACGATCTAAAACATGGATAGAATGCACCGGGTTGGGTTTTCTCTGACTGTGCTCCCGTAAAGGTGTCAAGGGACCAATGGTTTACCTAATGGGAATGCAGTCCGAGACGCAGACAGTCAGATCTGGGTCTTTCGATGTGATGTTTGATGCCAGCACATGGAGGGTACGCAGCATCTGGGATGgggtgaggctggaggtggccgGGGACGCGAGCCCGGTTGTCCTCCACAGCTTCACACAGCTGGACCCGGACCTACCTCTGCTGGAGAACTCGACCCAGGAGATTGGGGAGGAAGTGGAGGAAGGGGCCATCTACACCATCACCTTGCGGAAGGTGCAGGTGCACCAAACAGCCAGCAAGGGGCAGCGGTGGCTCGGGGTGGAGACGGACTCCGCCCTCAGTCTATACGAGACCTGCAAGGTCCGCACCATCAAGGCCGGGACCCTGGAGAAGCTGGTGGAGTACATGGTGTCCGCCTTCCAAGGCAACGACTCCACCTACGTCACCATCTTCCTCTGCACCTACCGCTCCTTCGCAACAGCCAAGCAGGTGCTGGACCTGCTTCTGAACAGGTTTGCTAAGCTGCAGCATCACTCCAGTGCAGAGGGGCCCAGAATGACCCACGATGACCGCACAGAGCTGAAGAACACTATCTCGTCCATCCTGGGAGCCTGGTTGGATCAGTACTCTGAGGATTTCTGGAAGCCTCCGGAGTACAGCTGCCTTCGGCGCCTCATCTCCTACCTGCACCTCAACTTCCCGGGATCGGACCTGGAGCGCCGAGCCTGCAACCTGCTGGCCCAGTTCCACCGCCGGCACCGAGATCCAGAGCAGGAGGttttggACCACAGCACCTGCACCTTCACCATGCTGGAGGAGAACGGCTACGAAGACGAACGCCCGGACTTCCTGTCCTTTGACCCAGCTGTGGTGGCGGAGCAGTTCACGCTCATGGATGCGGAGCTGTTTAAGAAGGTGGTCCCGTACCACTGTTTGGGGAGCATCTGGTCCCAGAGAGACAAGAAGGGGAAGGAGCACCTGGCTCCCACCATCCGGGCCACCGTGGCCCAGTTCAACTGCGTCACCAACTGCGTCATCGCCACCTGCCTGAGCGACCGCTCTCTCAAACCCACGCAGCGAGCCAAGCTGGTGGAGCGCTGGATCGAGGTGGCAAGGGAGTGCCGGTTTCTGAAGAACTTCtcctccctgcgtgccattctCTCTGCCCTGCAGTGTAATTCAGTCCACCGGCTGAAGAGGACATGGGATGAGGTGTCCAGAGAGAACTTCAGAATCTTCCTGGAGCTGTCGGAGATCTTCTCGGATGAGAACAACCACTCCCTCAGCCGGGAGCTCCTCATCAAGGAGGGGACCTCCAAATTTGCCACCCTGGAGATCAACCCAAAACGAGCGCAGAAGAGGCACCAGCAGCAGAGAGATCTGGGCGTGATGCAGGGGACCATTCCGTACCTGGGCACCTTCCTGACTGACCTGGTCATGATGGATACCGCCATGAAGGACTTCATGGATGGGGGGCTGATCAATTTTGAGAAGAGAAGAAAGGAGTTTGAGGTGATCGCCCAGATCAAGCTTCTGCAGCTGGCCTGTAATAACTACAGCTTTACGTGTGACAGTCACCTCAGAGAGTGGTTCTCTGGTGTGGACAAGCTCACCGAAGCCGAAAGCTACAGCCAGTCGTGTGAAATTGAGCCTTTGTCGGAATCTGCCAGCAACACTCTCAAAGCAAAGAAGAACTCTGGAATTATCAAGCGCTGGAGCGAtcgACAGCCAGCGAATGCTGAGGCTAGCTGTAGCAGCGCAGGAAGCTCCCATTCGAAGTCTTTCGACCAGCTGCGTTACGGATCTGTCCTGGGGAGTTCGGGCGGCGGCGACGGGGGTGACACCCTCAGTGTCACCTCCGCTGGCTCAAGCAGCTCTGATGTAGAGGAGGTCAACATCAGCTTCATCTCCGACTCGCCAGACACCCATGAGAAGAAGACCTCCACGCCTACAGTAAAACATTCCAATTCTACCTTAGGGAAGGGAGGCCTGATACCAGAACCCACTCCCACGTTCTGGGAGTCCACCTCGCTGTCGTCTCTGGACACCTCAGGGATGGGCTCCGGCTCGGGCTCGAGcagcgcctcctcctcctccatgtcCTCCACCCCCGTCACGGCCTCCCGCTCCCACAAGCGCTCTGTTTCAGGGGTCTCCAGttactcctccctctccctgccaCTCTACAACCAGCAGGTGGATGACTGCTGCATCATCCGCGTCAGCCTGGATGTGGACAATGGAAACCTGTACAAGAGCAtcctgGTGACCAGTCAGGATAAGACCCCAGCGGTCATCAGGAAAGCCATGGTCAAACATAACCTTGACCGTGAACGGCCGGAGGACTACGAGCTCCTGCAGAAGATCTCAGAGGAAAAAGAACTGAAGATTCCAGACAACGCCAATGTGTTCTATGCCATGAATTCTTCCGCCAACTATGACTTTGTGCTGAAGAAGCGGGGGTTCCCGAAGGCGGGGCGCACCAAACACGTGGCCAGCTCCACCCTGCCCCGCATGAAGCAGAAGGGCCTCAAAATAGCAAAAGGAGGCCCTCTGGGTTGGTGCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00617	RasGEF	RasGEF domain	Family	Interproscan
PF00618	RasGEF_N	RasGEF N-terminal motif	Domain	Interproscan
PF00788	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000159	Domain	Ras-associating domain	Interproscan
IPR000651	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR015758	Domain	Ral guanine nucleotide dissociation stimulator, RA domain	Interproscan
IPR019804	Conserved_site	Ras guanine-nucleotide exchange factor, conserved site	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-